Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000837

Physical Location & Seq

Genomic Coordinates Reverse (-)

19451604 .. 19452936

Gene Structure 1333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00179960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAGGAGATGCTTCAAGGTATTCGTAGATTTCATGAGCAGCCTGCAGAAGACAAGATGGAGTTGTACTCTCGTGACTTCAAGAATTCGATCAACTTCTATTGCAGTGGAGATTTGGAAGTGCGTGCAAAATCAGCAGCAGATTGGAGAGACACCTTATCCTGCAGAGCCGTAGATGATAAATGGGACTTTGAAGCACTGCCTCAAGTGTGCAGTGAGTACATCAAAAACTTGATTGAACTTCAGAATGTGCTATCCGAATTACTGTCGGAAGCATTAGGGCTTAGCAAGGATCACCTAGCACGCATGAGGTGCTTGAAAGCTTTCTCATTATCATGCCACTATTATCCAATTTGCCCCGAGCCTGAACTGACTCTAGGCACAATCAAACACTCAGATCCCTCATTTCTTACCTTAGTCCTGCAAGACGAGATTGGAGGTCTCCAAGTTCTCCATAAGGATCAATGGGTTGACGTGCCGCCAGTGGATGGAGCATTTGTATCAAATCTAGGTGACCTTATGCAGCTCGTTACTAATAACAAGTTCAAGAGTGTGGAACATAGAGTGCTAGCTACCCCGCTTGTCAAGCCACGAATATCAGTTGCATCTTTCTTTGCTCCTATGGATAGCGACAAACGTGTCAAGCCATACGGGCCTATAAAGGAGCTTCTCTCTGAGAACAATCCCCCAATATACAGGGACACCCTTTACGGAGAATATACTGGGTATTACAGAGTTAATGGACAAAATGGCAGCTCTGCCCTGCCTAATTTCAGACTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

261

Amino Acids

29.75

Weight (kDa)

5.54

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	111 - 207	4.1e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21830 FvH4_2g21831 FvH4_2g21910
malus_domestica	MD05G1200300.v1.1 MD05G1205100.v1.1 MD10G1186700.v1.1 MD10G1187000.v1.1
prunus_persica	Prupe.8G226500_v2.0.a1 Prupe.8G226700_v2.0.a1 Prupe.8G226800_v2.0.a1
pyrus_communis	pycom05g18690 pycom05g18720 pycom05g19130 pycom10g16150 pycom10g16170
rosa_chinensis	RchiOBHm_Chr6g0288651 RchiOBHm_Chr6g0288661 RchiOBHm_Chr6g0288671 RchiOBHm_Chr6g0288701 RchiOBHm_Chr6g0288711 RchiOBHm_Chr6g0288761 RchiOBHm_Chr6g0310751
rosa_laevigata	RLG00000012367 RLG00000012370 RLG00000012375 RLG00000012379 RLG00000012382 RLG00000012383 RLG00000012384 RLG00000012386
rosa_multiflora	Rmu_co8507331.1_g000002 Rmu_sc0004688.1_g000011 Rmu_sc0004861.1_g000006 Rmu_sc0004861.1_g000009 Rmu_sc0008285.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179890 Rroxscaffold_7G00179930 Rroxscaffold_7G00179940 Rroxscaffold_7G00179950 Rroxscaffold_7G00179960
rosa_rugosa	Rorug06G0197500 Rorug06G0197600 Rorug06G0197600 Rorug06G0197700 Rorug06G0383000
rosa_samantha	Rh6AG309200 Rh6AG309300 Rh6AG309400 Rh6AG496800 Rh6BG314400 Rh6BG314500 Rh6BG314600 Rh6BG314700 Rh6BG314800 Rh6BG315300 Rh6CG321800 Rh6CG321900 Rh6CG322000 Rh6CG322800 Rh6DG307600 Rh6DG307700 Rh6DG307800 Rh6DG308500 Rh6DG498200
rosa_wichuraiana	Rw6G026700 Rw6G026710 Rw6G026740 Rw6G043250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	638
AccB7I	CCANNNNNTGG	1 cut(s)	488
AciI	CCGC	2 cut(s)	479, 578
AclWI	GGATC	3 cut(s)	300, 392, 468
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	227
AfaI	GTAC	2 cut(s)	68, 221
AfiI	CCNNNNNNNGG	1 cut(s)	488
AflIII	ACRYGT	1 cut(s)	637
AgsI	TTSAA	6 cut(s)	17, 82, 194, 239, 319, 547
AjiI	CACGTC	1 cut(s)	475
AluBI	AGCT	5 cut(s)	323, 526, 572, 667, 756
AluI	AGCT	5 cut(s)	323, 526, 572, 667, 756
Alw26I	GTCTC	2 cut(s)	144, 446
AlwI	GGATC	3 cut(s)	300, 392, 468
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	653
ApeKI	GCWGC	4 cut(s)	40, 137, 523, 753
ApoI	RAATTY	1 cut(s)	85
Asp700I	GAANNNNTTC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	653
AsuHPI	GGTGA	2 cut(s)	287, 524
AsuNHI	GCTAGC	1 cut(s)	568
AvaI	CYCGRG	1 cut(s)	359
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	4 cut(s)	52, 149, 535, 765
BccI	CCATC	2 cut(s)	52, 482
BceAI	ACGGC	1 cut(s)	155
BcoDI	GTCTC	2 cut(s)	144, 446
BfaI	CTAG	4 cut(s)	299, 377, 509, 569
BfmI	CTRYAG	2 cut(s)	45, 163
BglI	GCCNNNNNGGC	1 cut(s)	652
BisI	GCNGC	5 cut(s)	41, 138, 479, 524, 754
BlpI	GCTNAGC	1 cut(s)	284
BlsI	GCNGC	5 cut(s)	42, 139, 480, 525, 755
BmeT110I	CYCGRG	1 cut(s)	359
BmgBI	CACGTC	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	653
BmrI	ACTGGG	1 cut(s)	732
BmsI	GCATC	1 cut(s)	614
BmtI	GCTAGC	1 cut(s)	572
BmuI	ACTGGG	1 cut(s)	732
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	4 cut(s)	53, 85, 656, 688
Bpu1102I	GCTNAGC	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	446
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse1I	ACTGG	2 cut(s)	482, 727
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMII	CTCAG	2 cut(s)	408, 666
BseNI	ACTGG	2 cut(s)	482, 727
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	4 cut(s)	52, 149, 535, 765
BsgI	GTGCAG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	655
BsiHKCI	CYCGRG	1 cut(s)	359
BslFI	GGGAC	2 cut(s)	200, 713
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	2 cut(s)	144, 446
BsmFI	GGGAC	2 cut(s)	200, 713
BsnI	GGCC	1 cut(s)	655
Bso31I	GGTCTC	1 cut(s)	446
BsoBI	CYCGRG	1 cut(s)	359
Bsp143I	GATC	4 cut(s)	90, 292, 397, 460
Bsp1720I	GCTNAGC	1 cut(s)	284
BspACI	CCGC	2 cut(s)	479, 578
BspANI	GGCC	1 cut(s)	655
BspCNI	CTCAG	2 cut(s)	407, 667
BspHI	TCATGA	1 cut(s)	34
BspMAI	CTGCAG	2 cut(s)	49, 167
BspOI	GCTAGC	1 cut(s)	572
BspPI	GGATC	3 cut(s)	300, 392, 468
BspTNI	GGTCTC	1 cut(s)	446
BsrI	ACTGG	2 cut(s)	482, 727
BssMI	GATC	4 cut(s)	90, 292, 397, 460
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstC8I	GCNNGC	4 cut(s)	45, 126, 304, 570
BstDEI	CTNAG	4 cut(s)	284, 394, 415, 675
BstEII	GGTNACC	1 cut(s)	512
BstF5I	GGATG	1 cut(s)	493
BstKTI	GATC	4 cut(s)	93, 295, 400, 463
BstMAI	GTCTC	2 cut(s)	144, 446
BstMBI	GATC	4 cut(s)	90, 292, 397, 460
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 312, 586, 652
BstPI	GGTNACC	1 cut(s)	512
BstSFI	CTRYAG	2 cut(s)	45, 163
BstV1I	GCAGC	4 cut(s)	52, 149, 535, 765
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	655
BtrI	CACGTC	1 cut(s)	475
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	3 cut(s)	112, 197, 220
BtsIMutI	CAGTG	4 cut(s)	112, 197, 220, 489
Cac8I	GCNNGC	4 cut(s)	45, 126, 304, 570
CciI	TCATGA	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	653
Csp6I	GTAC	2 cut(s)	67, 220
CviAII	CATG	3 cut(s)	35, 307, 336
CviQI	GTAC	2 cut(s)	67, 220
DdeI	CTNAG	4 cut(s)	284, 394, 415, 675
DpnI	GATC	4 cut(s)	92, 294, 399, 462
DpnII	GATC	4 cut(s)	90, 292, 397, 460
DrdI	GACNNNNNNGTC	1 cut(s)	638
DseDI	GACNNNNNNGTC	1 cut(s)	638
Eco31I	GGTCTC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	227
Eco88I	CYCGRG	1 cut(s)	359
Eco91I	GGTNACC	1 cut(s)	512
EcoO65I	GGTNACC	1 cut(s)	512
EcoRI	GAATTC	1 cut(s)	85
FaeI	CATG	3 cut(s)	38, 310, 339
FaqI	GGGAC	2 cut(s)	200, 713
FatI	CATG	3 cut(s)	34, 306, 335
FauI	CCCGC	1 cut(s)	585
Fnu4HI	GCNGC	5 cut(s)	41, 138, 479, 524, 754
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	5 cut(s)	41, 138, 479, 524, 754
FspBI	CTAG	4 cut(s)	299, 377, 509, 569
GluI	GCNGC	5 cut(s)	41, 138, 479, 524, 754
HaeIII	GGCC	1 cut(s)	655
Hin1II	CATG	3 cut(s)	38, 310, 339
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	1 cut(s)	321
HinfI	GANTC	1 cut(s)	373
HphI	GGTGA	2 cut(s)	287, 524
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	6 cut(s)	246, 259, 271, 397, 676, 776
Hpy188III	TCNNGA	4 cut(s)	35, 74, 82, 547
Hpy8I	GTNNAC	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4IV	ACGT	2 cut(s)	474, 637
HpyCH4V	TGCA	9 cut(s)	47, 105, 128, 165, 213, 424, 523, 605, 781
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 312, 586, 652
HpyF3I	CTNAG	4 cut(s)	284, 394, 415, 675
HpySE526I	ACGT	2 cut(s)	474, 637
Hsp92II	CATG	3 cut(s)	38, 310, 339
Kzo9I	GATC	4 cut(s)	90, 292, 397, 460
LmnI	GCTCC	3 cut(s)	491, 622, 664
LpnPI	CCDG	8 cut(s)	57, 175, 378, 434, 495, 682, 708, 776
Lsp1109I	GCAGC	4 cut(s)	52, 149, 535, 765
LweI	GCATC	1 cut(s)	614
MaeI	CTAG	4 cut(s)	299, 377, 509, 569
MaeII	ACGT	2 cut(s)	474, 637
MaeIII	GTNAC	3 cut(s)	74, 512, 529
MalI	GATC	4 cut(s)	92, 294, 399, 462
MboI	GATC	4 cut(s)	90, 292, 397, 460
MboII	GAAGA	1 cut(s)	62
MflI	RGATCY	1 cut(s)	397
MluCI	AATT	4 cut(s)	85, 260, 351, 769
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	4 cut(s)	213, 303, 412, 431
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	1 cut(s)	738
MslI	CAYNNNNRTG	1 cut(s)	334
MwoI	GCNNNNNNNGC	4 cut(s)	134, 312, 586, 652
NdeII	GATC	4 cut(s)	90, 292, 397, 460
NheI	GCTAGC	1 cut(s)	568
NlaIII	CATG	3 cut(s)	38, 310, 339
NmuCI	GTSAC	2 cut(s)	74, 512
PagI	TCATGA	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	323
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	5 cut(s)	42, 139, 480, 525, 755
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PspEI	GGTNACC	1 cut(s)	512
PspPI	GGNCC	1 cut(s)	653
PstI	CTGCAG	2 cut(s)	49, 167
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	2 cut(s)	68, 221
RsaNI	GTAC	2 cut(s)	67, 220
RseI	CAYNNNNRTG	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	738
SatI	GCNGC	5 cut(s)	41, 138, 479, 524, 754
Sau3AI	GATC	4 cut(s)	90, 292, 397, 460
Sau96I	GGNCC	1 cut(s)	653
SchI	GAGTC	1 cut(s)	367
SfaNI	GCATC	1 cut(s)	614
SfcI	CTRYAG	2 cut(s)	45, 163
SmiMI	CAYNNNNRTG	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	4 cut(s)	85, 260, 351, 769
SsiI	CCGC	2 cut(s)	479, 578
SspMI	CTAG	4 cut(s)	299, 377, 509, 569
TaaI	ACNGT	1 cut(s)	267
TaiI	ACGT	2 cut(s)	477, 640
TaqI	TCGA	1 cut(s)	89
TasI	AATT	4 cut(s)	85, 260, 351, 769
TatI	WGTACW	2 cut(s)	66, 219
TauI	GCSGC	1 cut(s)	481
Tru1I	TTAA	1 cut(s)	738
Tru9I	TTAA	1 cut(s)	738
TscAI	CASTG	4 cut(s)	112, 204, 220, 489
TseFI	GTSAC	2 cut(s)	74, 512
TseI	GCWGC	4 cut(s)	40, 137, 523, 753
Tsp45I	GTSAC	2 cut(s)	74, 512
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	726
TspRI	CASTG	4 cut(s)	112, 204, 220, 489
Van91I	CCANNNNNTGG	1 cut(s)	488
XapI	RAATTY	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	4 cut(s)	299, 377, 509, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.