Rh6DG307800

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000837
Physical Location & Seq
Forward (+)
50863870 .. 50865104
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG307800.1

Sequence Viewer

Length: 693 bp
ATGGTGAAGGCAATTAAAGATGCATGTGAAACATGGAGGTTCTTTCAGATAGTTTACCATGGAGTTCCACTTGCTGTTATGGAGGAGATGCTTCAAGGTATTCGTAGATTTCACGAGCAGCCTGCAGAAGACAAGATGGAGTTGTACTCTCGTGACTTCAAGAATTCAGCCAACTTTGATTGCAGTGGAGATCTGAAATTGCGTGCAAAATCAGCAGCAGATTGGAGAGACACCTTATCTTGTAGAGCCGTAGATGATAAATGGGACTTTGAAGCACTGCCTCAAGTGTGCAGACGTGAAATAAATCCCTCATTTCTTACCTTAGTCCTGCAAGACGAGATTGGAGGGCTCCAAGTTCTCAATAAGGATCAATGGGTTGACGTGTCGCCAGTGGATGGAGCATTTGTAGCAAATCTTGGTGACCTTATGCAGCTCATTACTAATAACAAGTTCAATAGTGTGGAACATAGAGTGCTAGCTACCCCGCTTGTCAAGCCACGAATATCAGTTGCATCTTTCTTTGCTCCTGCGGATAGCGACAAACGTGTCAAGCCATATGGGCCTATAAAGGAGCTTCTATCTGAGAACAATCCCCCAATATACAGGGACACCCTTTACGGAGAGTATACTGGGTATTACAGAGTTAATGGACAAAATGGCAGCTCTGCCCTGCCTAATTTCAGACTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

230

Amino Acids

26.22

Weight (kDa)

5.85

Isoelectric Point (pI)

29.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 2 - 84 5.6e-15 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 100 - 176 1.8e-20 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 545
AccB7I CCANNNNNTGG 1 cut(s) 395
AccI GTMKAC 1 cut(s) 626
AciI CCGC 2 cut(s) 485, 530
AclWI GGATC 1 cut(s) 375
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 395
AflIII ACRYGT 2 cut(s) 381, 544
AgsI TTSAA 4 cut(s) 95, 160, 272, 454
AjiI CACGTC 2 cut(s) 296, 382
AluBI AGCT 4 cut(s) 433, 479, 574, 663
AluI AGCT 4 cut(s) 433, 479, 574, 663
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 375
AoxI GGCC 1 cut(s) 560
ApeKI GCWGC 4 cut(s) 118, 215, 430, 660
ApoI RAATTY 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 560
AsuHPI GGTGA 2 cut(s) 16, 431
AsuNHI GCTAGC 1 cut(s) 475
BanII GRGCYC 1 cut(s) 351
BauI CACGAG 2 cut(s) 113, 150
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 4 cut(s) 130, 227, 442, 672
BccI CCATC 2 cut(s) 130, 389
BceAI ACGGC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 1 cut(s) 476
BfmI CTRYAG 1 cut(s) 123
BglI GCCNNNNNGGC 1 cut(s) 559
BglII AGATCT 1 cut(s) 190
BisI GCNGC 4 cut(s) 119, 216, 431, 661
BlsI GCNGC 4 cut(s) 120, 217, 432, 662
BmgBI CACGTC 2 cut(s) 296, 382
BmgT120I GGNCC 1 cut(s) 560
BmiI GGNNCC 1 cut(s) 350
BmrI ACTGGG 1 cut(s) 639
BmsI GCATC 3 cut(s) 10, 78, 521
BmtI GCTAGC 1 cut(s) 479
BmuI ACTGGG 1 cut(s) 639
BpiI GAAGAC 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BpuEI CTTGAG 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse1I ACTGG 2 cut(s) 389, 634
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMII CTCAG 1 cut(s) 573
BseNI ACTGG 2 cut(s) 389, 634
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 4 cut(s) 130, 227, 442, 672
BsgI GTGCAG 1 cut(s) 310
BshFI GGCC 1 cut(s) 562
BslFI GGGAC 2 cut(s) 278, 620
BslI CCNNNNNNNGG 1 cut(s) 395
BsmAI GTCTC 1 cut(s) 222
BsmFI GGGAC 2 cut(s) 278, 620
BsnI GGCC 1 cut(s) 562
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 2 cut(s) 190, 367
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 2 cut(s) 485, 530
BspANI GGCC 1 cut(s) 562
BspCNI CTCAG 1 cut(s) 574
BspLI GGNNCC 1 cut(s) 350
BspMAI CTGCAG 1 cut(s) 127
BspOI GCTAGC 1 cut(s) 479
BspPI GGATC 1 cut(s) 375
BsrI ACTGG 2 cut(s) 389, 634
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 190, 367
BssNAI GTATAC 1 cut(s) 627
BssSI CACGAG 2 cut(s) 113, 150
BssT1I CCWWGG 1 cut(s) 58
Bst1107I GTATAC 1 cut(s) 627
Bst2BI CACGAG 2 cut(s) 113, 150
BstC8I GCNNGC 3 cut(s) 123, 204, 477
BstDEI CTNAG 2 cut(s) 322, 582
BstDSI CCRYGG 1 cut(s) 58
BstEII GGTNACC 1 cut(s) 419
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 2 cut(s) 193, 370
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 2 cut(s) 190, 367
BstMWI GCNNNNNNNGC 4 cut(s) 212, 407, 493, 559
BstNSI RCATGY 1 cut(s) 27
BstPI GGTNACC 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 4 cut(s) 130, 227, 442, 672
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BstZ17I GTATAC 1 cut(s) 627
BsuRI GGCC 1 cut(s) 562
BtgI CCRYGG 1 cut(s) 58
BtrI CACGTC 2 cut(s) 296, 382
BtsCI GGATG 1 cut(s) 400
BtsI GCAGTG 2 cut(s) 190, 275
BtsIMutI CAGTG 3 cut(s) 190, 275, 396
Cac8I GCNNGC 3 cut(s) 123, 204, 477
Cfr13I GGNCC 1 cut(s) 560
Csp6I GTAC 1 cut(s) 145
CviAII CATG 3 cut(s) 24, 33, 59
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 2 cut(s) 322, 582
DpnI GATC 2 cut(s) 192, 369
DpnII GATC 2 cut(s) 190, 367
DrdI GACNNNNNNGTC 1 cut(s) 545
DseDI GACNNNNNNGTC 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 351
Eco91I GGTNACC 1 cut(s) 419
EcoO65I GGTNACC 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 58
EcoT22I ATGCAT 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 3 cut(s) 27, 36, 62
FaqI GGGAC 2 cut(s) 278, 620
FatI CATG 3 cut(s) 23, 32, 58
FauI CCCGC 1 cut(s) 492
FauNDI CATATG 1 cut(s) 556
FblI GTMKAC 1 cut(s) 626
Fnu4HI GCNGC 4 cut(s) 119, 216, 431, 661
FokI GGATG 1 cut(s) 407
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 4 cut(s) 119, 216, 431, 661
FspBI CTAG 1 cut(s) 476
GluI GCNGC 4 cut(s) 119, 216, 431, 661
HaeIII GGCC 1 cut(s) 562
Hin1II CATG 3 cut(s) 27, 36, 62
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HphI GGTGA 2 cut(s) 16, 431
Hpy166II GTNNAC 3 cut(s) 55, 379, 627
Hpy188I TCNGA 4 cut(s) 48, 195, 583, 683
Hpy188III TCNNGA 3 cut(s) 113, 152, 160
Hpy8I GTNNAC 3 cut(s) 55, 379, 627
HpyCH4IV ACGT 3 cut(s) 295, 381, 544
HpyCH4V TGCA 9 cut(s) 23, 125, 183, 206, 291, 331, 430, 512, 688
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 407, 493, 559
HpyF3I CTNAG 2 cut(s) 322, 582
HpySE526I ACGT 3 cut(s) 295, 381, 544
Hsp92II CATG 3 cut(s) 27, 36, 62
Kzo9I GATC 2 cut(s) 190, 367
LmnI GCTCC 4 cut(s) 354, 398, 529, 571
LpnPI CCDG 7 cut(s) 135, 341, 402, 540, 589, 615, 683
Lsp1109I GCAGC 4 cut(s) 130, 227, 442, 672
LweI GCATC 3 cut(s) 10, 78, 521
MaeI CTAG 1 cut(s) 476
MaeII ACGT 3 cut(s) 295, 381, 544
MaeIII GTNAC 2 cut(s) 152, 419
MalI GATC 2 cut(s) 192, 369
MboI GATC 2 cut(s) 190, 367
MboII GAAGA 1 cut(s) 140
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 4 cut(s) 12, 163, 197, 676
MnlI CCTC 5 cut(s) 30, 76, 291, 319, 338
Mph1103I ATGCAT 1 cut(s) 25
MseI TTAA 2 cut(s) 15, 645
MwoI GCNNNNNNNGC 4 cut(s) 212, 407, 493, 559
NcoI CCATGG 1 cut(s) 58
NdeI CATATG 1 cut(s) 556
NdeII GATC 2 cut(s) 190, 367
NheI GCTAGC 1 cut(s) 475
NlaIII CATG 3 cut(s) 27, 36, 62
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 2 cut(s) 152, 419
NsiI ATGCAT 1 cut(s) 25
NspI RCATGY 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 395
PkrI GCNGC 4 cut(s) 120, 217, 432, 662
PspEI GGTNACC 1 cut(s) 419
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 1 cut(s) 560
PstI CTGCAG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 2 cut(s) 15, 645
SatI GCNGC 4 cut(s) 119, 216, 431, 661
Sau3AI GATC 2 cut(s) 190, 367
Sau96I GGNCC 1 cut(s) 560
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 3 cut(s) 10, 78, 521
SfcI CTRYAG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 282
SmoI CTYRAG 1 cut(s) 282
Sse9I AATT 4 cut(s) 12, 163, 197, 676
SsiI CCGC 2 cut(s) 485, 530
SspMI CTAG 1 cut(s) 476
StyI CCWWGG 1 cut(s) 58
TaiI ACGT 3 cut(s) 298, 384, 547
TasI AATT 4 cut(s) 12, 163, 197, 676
TatI WGTACW 1 cut(s) 144
Tru1I TTAA 2 cut(s) 15, 645
Tru9I TTAA 2 cut(s) 15, 645
TscAI CASTG 3 cut(s) 190, 282, 396
TseFI GTSAC 2 cut(s) 152, 419
TseI GCWGC 4 cut(s) 118, 215, 430, 660
Tsp45I GTSAC 2 cut(s) 152, 419
TspGWI ACGGA 1 cut(s) 633
TspRI CASTG 3 cut(s) 190, 282, 396
Van91I CCANNNNNTGG 1 cut(s) 395
XapI RAATTY 1 cut(s) 163
XceI RCATGY 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 626
XspI CTAG 1 cut(s) 476
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.