pycom05g18690

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000837
Physical Location & Seq
Forward (+)
21559219 .. 21559772
554 bp
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UTR
Exon/CDS
Intron
pycom05g18690.2

Sequence Viewer

Length: 342 bp
ATGGAGGAGATGCTGGAAGGTATAAGAAGATTTCATGAGCAGCCCCCGGAGGCCAAGAGGGCGTCGTACTCCCGTGACTATACTTGGCATGTGAACTATTATTGCTGTGGAGATTTGAAAGTGCGAGCGAAATCAGCAGCAGACTGGAGAGACACCTTGTCCTTCAAAGCCGTAGAGGATCAATGGGACTTTGAAGCACTTCCTCAACCTAAAGCGCACTTTCTGGAGAAGCACCTTCCAGATGCTTCTTCAGAATGTGCTTATACGCAGAAAAATGAAGTGAGCGAGCACGTCAAAAACTTGATTAAACTGCGGGATATGCTTTCTGAACTACTGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

114

Amino Acids

13.31

Weight (kDa)

5.71

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 313
AclWI GGATC 1 cut(s) 186
AcuI CTGAAG 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 1 cut(s) 68
AgsI TTSAA 3 cut(s) 118, 166, 194
AhdI GACNNNNNGTC 1 cut(s) 157
AjiI CACGTC 1 cut(s) 292
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 1 cut(s) 186
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 40, 137
Asp700I GAANNNNTTC 1 cut(s) 198
AspLEI GCGC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 52, 149
BceAI ACGGC 1 cut(s) 155
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 144
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 2 cut(s) 41, 138
BlsI GCNGC 2 cut(s) 42, 139
Bme1390I CCNGG 1 cut(s) 47
BmeRI GACNNNNNGTC 1 cut(s) 157
BmgBI CACGTC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 2 cut(s) 166, 245
BpuMI CCSGG 1 cut(s) 47
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 52, 149
BshFI GGCC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 1 cut(s) 313
BspANI GGCC 1 cut(s) 53
BspHI TCATGA 1 cut(s) 34
BspPI GGATC 1 cut(s) 186
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 178
BssNI GRCGYC 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 336
BstACI GRCGYC 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 126, 287
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 3 cut(s) 59, 134, 319
BstNSI RCATGY 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 52, 149
BsuRI GGCC 1 cut(s) 53
BtrI CACGTC 1 cut(s) 292
Cac8I GCNNGC 2 cut(s) 126, 287
CciI TCATGA 1 cut(s) 34
CfoI GCGC 1 cut(s) 217
CseI GACGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 67
CviAII CATG 2 cut(s) 35, 89
CviJI RGCY 3 cut(s) 43, 53, 170
CviKI_1 RGCY 3 cut(s) 43, 53, 170
CviQI GTAC 1 cut(s) 67
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
DriI GACNNNNNGTC 1 cut(s) 157
Eam1105I GACNNNNNGTC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 234
FaeI CATG 2 cut(s) 38, 92
FaiI YATR 6 cut(s) 23, 36, 81, 90, 264, 320
FaqI GGGAC 1 cut(s) 200
FatI CATG 2 cut(s) 34, 88
FauI CCCGC 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 41, 138
Fsp4HI GCNGC 2 cut(s) 41, 138
GlaI GCGC 1 cut(s) 216
GluI GCNGC 2 cut(s) 41, 138
GsuI CTGGAG 2 cut(s) 166, 245
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 47
HgaI GACGC 1 cut(s) 51
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 2 cut(s) 38, 92
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HpaII CCGG 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 253, 328
Hpy188III TCNNGA 3 cut(s) 35, 224, 239
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 3 cut(s) 11, 172, 245
HpyCH4III ACNGT 1 cut(s) 336
HpyCH4IV ACGT 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 134, 319
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 2 cut(s) 38, 92
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 1 cut(s) 178
LpnPI CCDG 4 cut(s) 60, 130, 209, 252
Lsp1109I GCAGC 2 cut(s) 52, 149
LweI GCATC 1 cut(s) 232
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 2 cut(s) 39, 240
MhlI GDGCHC 1 cut(s) 291
MnlI CCTC 4 cut(s) 43, 51, 169, 213
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 1 cut(s) 306
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 47
MwoI GCNNNNNNNGC 3 cut(s) 59, 134, 319
NciI CCSGG 1 cut(s) 47
NdeII GATC 1 cut(s) 178
NlaIII CATG 2 cut(s) 38, 92
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 1 cut(s) 92
PagI TCATGA 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 198
PkrI GCNGC 2 cut(s) 42, 139
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 2 cut(s) 41, 138
Sau3AI GATC 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 291
SetI ASST 5 cut(s) 22, 158, 211, 237, 294
SfaNI GCATC 1 cut(s) 232
SsiI CCGC 1 cut(s) 313
StyD4I CCNGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 336
TaiI ACGT 1 cut(s) 294
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 2 cut(s) 40, 137
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 2 cut(s) 23, 291
XceI RCATGY 1 cut(s) 92
XmnI GAANNNNTTC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.