Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004688.1

Orthogroup ID

OG0000837

Physical Location & Seq

Genomic Coordinates Reverse (-)

35577 .. 36536

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004688.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atggcagcagttgtggattgtgatcagcgtgagaaggagctgaaagaattctacgaaagcaaagctggcgtcaaaggacttgcagacgctggggtgaccaagctcccaagcatgttcgtacaccctcctgagaatctacttaactcgtcattcccacaagatgatgagcaatatcagaaacttcgcaaccttcaacttccggtgattgatctcagcggttttgataacagcgagaggcgaaaagtaatcatcacagacataaacaaagcagctgagtcatggggcttctttcagttggtgaaccatggaattccgcttggtcttatggaggggatccagaaaagtatccgagggttccatgagctaccccagaaggagaaggtgaagtggtactcgcgcgattttacccagaaggttaggttcttcagcaattttaatttgaaggtgtcgacgccagctgcctggagggataccttgtcatgcaaggtcctgcaagacccagaaagctttgaagcaataccgcaagtgtgcagacgagaagtaagtgagtatatgaaacacatcgatggagtggaagagaagttatccgagttattttcggaagctttaggtcttagtagtgactatcttgcaagcatagggtgcttcaaatcgaggtcattggagtgccactatcacccgatttgccctgaaccccatttgactatgggtggagtcaagcattcagacctcccctttctcaccttgctccttcaagacggtgttggcggcctacaagttcttcatcaaaatgtttggattgatgttgcccccatgaagggagctttgatagcaaatattggtgacatgatgcaggtggtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

287

Amino Acids

32.37

Weight (kDa)

5.74

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21830 FvH4_2g21831 FvH4_2g21910
malus_domestica	MD05G1200300.v1.1 MD05G1205100.v1.1 MD10G1186700.v1.1 MD10G1187000.v1.1
prunus_persica	Prupe.8G226500_v2.0.a1 Prupe.8G226700_v2.0.a1 Prupe.8G226800_v2.0.a1
pyrus_communis	pycom05g18690 pycom05g18720 pycom05g19130 pycom10g16150 pycom10g16170
rosa_chinensis	RchiOBHm_Chr6g0288651 RchiOBHm_Chr6g0288661 RchiOBHm_Chr6g0288671 RchiOBHm_Chr6g0288701 RchiOBHm_Chr6g0288711 RchiOBHm_Chr6g0288761 RchiOBHm_Chr6g0310751
rosa_laevigata	RLG00000012367 RLG00000012370 RLG00000012375 RLG00000012379 RLG00000012382 RLG00000012383 RLG00000012384 RLG00000012386
rosa_multiflora	Rmu_co8507331.1_g000002 Rmu_sc0004688.1_g000011 Rmu_sc0004861.1_g000006 Rmu_sc0004861.1_g000009 Rmu_sc0008285.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179890 Rroxscaffold_7G00179930 Rroxscaffold_7G00179940 Rroxscaffold_7G00179950 Rroxscaffold_7G00179960
rosa_rugosa	Rorug06G0197500 Rorug06G0197600 Rorug06G0197600 Rorug06G0197700 Rorug06G0383000
rosa_samantha	Rh6AG309200 Rh6AG309300 Rh6AG309400 Rh6AG496800 Rh6BG314400 Rh6BG314500 Rh6BG314600 Rh6BG314700 Rh6BG314800 Rh6BG315300 Rh6CG321800 Rh6CG321900 Rh6CG322000 Rh6CG322800 Rh6DG307600 Rh6DG307700 Rh6DG307800 Rh6DG308500 Rh6DG498200
rosa_wichuraiana	Rw6G026700 Rw6G026710 Rw6G026740 Rw6G043250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	844
Acc36I	ACCTGC	1 cut(s)	844
AccI	GTMKAC	1 cut(s)	449
AccII	CGCG	2 cut(s)	397, 399
AciI	CCGC	4 cut(s)	216, 314, 521, 768
AclWI	GGATC	2 cut(s)	328, 341
AcsI	RAATTY	2 cut(s)	47, 309
AcuI	CTGAAG	1 cut(s)	409
AcyI	GRCGYC	2 cut(s)	69, 452
AfaI	GTAC	2 cut(s)	120, 392
AfiI	CCNNNNNNNGG	2 cut(s)	817, 818
AgsI	TTSAA	5 cut(s)	194, 442, 512, 649, 755
AjnI	CCWGG	1 cut(s)	461
AluBI	AGCT	9 cut(s)	40, 65, 103, 272, 364, 458, 507, 605, 824
AluI	AGCT	9 cut(s)	40, 65, 103, 272, 364, 458, 507, 605, 824
AlwI	GGATC	2 cut(s)	328, 341
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	1 cut(s)	769
ApeKI	GCWGC	3 cut(s)	5, 269, 458
ApoI	RAATTY	2 cut(s)	47, 309
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
Asp700I	GAANNNNTTC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	487
AsuHPI	GGTGA	7 cut(s)	106, 214, 310, 394, 668, 733, 854
AvaII	GGWCC	1 cut(s)	487
BamHI	GGATCC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	17, 281, 445
BccI	CCATC	1 cut(s)	560
BciT130I	CCWGG	1 cut(s)	463
BciVI	GTATCC	2 cut(s)	356, 463
BclI	TGATCA	1 cut(s)	22
BfuAI	ACCTGC	1 cut(s)	844
BfuI	GTATCC	2 cut(s)	356, 463
BisI	GCNGC	4 cut(s)	6, 270, 459, 769
BlsI	GCNGC	4 cut(s)	7, 271, 460, 770
Bme1390I	CCNGG	1 cut(s)	463
Bme18I	GGWCC	1 cut(s)	487
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	2 cut(s)	335, 356
BmrFI	CCNGG	1 cut(s)	463
BmsI	GCATC	1 cut(s)	840
BpmI	CTGGAG	1 cut(s)	484
Bsa29I	ATCGAT	1 cut(s)	564
BsaBI	GATNNNNATC	1 cut(s)	21
BsaHI	GRCGYC	2 cut(s)	69, 452
BsaJI	CCNNGG	2 cut(s)	304, 349
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	817, 818
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	463
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	2 cut(s)	304, 349
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	2 cut(s)	817, 818
BseMII	CTCAG	3 cut(s)	120, 226, 264
BseXI	GCAGC	3 cut(s)	17, 281, 445
BseYI	CCCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	550
Bsh1236I	CGCG	2 cut(s)	397, 399
BshFI	GGCC	1 cut(s)	771
BshVI	ATCGAT	1 cut(s)	564
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	817, 818
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	1 cut(s)	771
Bsp143I	GATC	3 cut(s)	22, 208, 333
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	4 cut(s)	216, 314, 521, 768
BspANI	GGCC	1 cut(s)	771
BspCNI	CTCAG	3 cut(s)	121, 225, 265
BspDI	ATCGAT	1 cut(s)	564
BspFNI	CGCG	2 cut(s)	397, 399
BspLI	GGNNCC	2 cut(s)	335, 356
BspMI	ACCTGC	1 cut(s)	844
BspPI	GGATC	2 cut(s)	328, 341
BssECI	CCNNGG	2 cut(s)	304, 349
BssMI	GATC	3 cut(s)	22, 208, 333
BssNI	GRCGYC	2 cut(s)	69, 452
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	463
Bst4CI	ACNGT	1 cut(s)	761
Bst6I	CTCTTC	1 cut(s)	570
BstACI	GRCGYC	2 cut(s)	69, 452
BstAPI	GCANNNNNTGC	1 cut(s)	642
BstC8I	GCNNGC	3 cut(s)	67, 456, 634
BstDEI	CTNAG	4 cut(s)	129, 212, 273, 614
BstDSI	CCRYGG	1 cut(s)	304
BstEII	GGTNACC	1 cut(s)	94
BstFNI	CGCG	2 cut(s)	397, 399
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	3 cut(s)	25, 211, 336
BstMBI	GATC	3 cut(s)	22, 208, 333
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 642, 830
BstNI	CCWGG	1 cut(s)	463
BstNSI	RCATGY	1 cut(s)	115
BstPI	GGTNACC	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	461
BstUI	CGCG	2 cut(s)	397, 399
BstV1I	GCAGC	3 cut(s)	17, 281, 445
BstX2I	RGATCY	1 cut(s)	333
BstXI	CCANNNNNNTGG	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	333
Bsu15I	ATCGAT	1 cut(s)	564
BsuI	GTATCC	2 cut(s)	356, 463
BsuRI	GGCC	1 cut(s)	771
BsuTUI	ATCGAT	1 cut(s)	564
BtgI	CCRYGG	1 cut(s)	304
BveI	ACCTGC	1 cut(s)	844
Cac8I	GCNNGC	3 cut(s)	67, 456, 634
CaiI	CAGNNNCTG	1 cut(s)	89
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	487
ClaI	ATCGAT	1 cut(s)	564
CseI	GACGC	3 cut(s)	58, 95, 460
Csp6I	GTAC	2 cut(s)	119, 391
CviAII	CATG	7 cut(s)	112, 279, 305, 359, 480, 814, 847
CviQI	GTAC	2 cut(s)	119, 391
DdeI	CTNAG	4 cut(s)	129, 212, 273, 614
DpnI	GATC	3 cut(s)	24, 210, 335
DpnII	GATC	3 cut(s)	22, 208, 333
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco130I	CCWWGG	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	487
Eco57I	CTGAAG	1 cut(s)	409
Eco91I	GGTNACC	1 cut(s)	94
EcoO109I	RGGNCCY	1 cut(s)	487
EcoO65I	GGTNACC	1 cut(s)	94
EcoRI	GAATTC	2 cut(s)	47, 309
EcoRII	CCWGG	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	7 cut(s)	115, 282, 308, 362, 483, 817, 850
FatI	CATG	7 cut(s)	111, 278, 304, 358, 479, 813, 846
FbaI	TGATCA	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	449
Fnu4HI	GCNGC	4 cut(s)	6, 270, 459, 769
Fsp4HI	GCNGC	4 cut(s)	6, 270, 459, 769
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	4 cut(s)	6, 270, 459, 769
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	484
HaeIII	GGCC	1 cut(s)	771
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	3 cut(s)	58, 95, 460
HhaI	GCGC	1 cut(s)	399
Hin1I	GRCGYC	2 cut(s)	69, 452
Hin1II	CATG	7 cut(s)	115, 282, 308, 362, 483, 817, 850
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HindIII	AAGCTT	2 cut(s)	505, 603
HinfI	GANTC	3 cut(s)	133, 275, 714
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	7 cut(s)	106, 214, 310, 394, 668, 733, 854
Hpy166II	GTNNAC	3 cut(s)	121, 301, 450
Hpy188I	TCNGA	5 cut(s)	177, 350, 589, 601, 727
Hpy188III	TCNNGA	3 cut(s)	128, 337, 755
Hpy8I	GTNNAC	3 cut(s)	121, 301, 450
Hpy99I	CGWCG	1 cut(s)	454
HpyAV	CCTTC	8 cut(s)	28, 200, 367, 373, 406, 436, 761, 811
HpyCH4III	ACNGT	1 cut(s)	761
HpyCH4V	TGCA	6 cut(s)	83, 483, 493, 531, 632, 853
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 642, 830
HpyF3I	CTNAG	4 cut(s)	129, 212, 273, 614
Hsp92I	GRCGYC	2 cut(s)	69, 452
Hsp92II	CATG	7 cut(s)	115, 282, 308, 362, 483, 817, 850
HspAI	GCGC	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	3 cut(s)	22, 208, 333
LmnI	GCTCC	4 cut(s)	37, 108, 753, 821
Lsp1109I	GCAGC	3 cut(s)	17, 281, 445
LweI	GCATC	1 cut(s)	840
MaeIII	GTNAC	3 cut(s)	94, 620, 842
MalI	GATC	3 cut(s)	24, 210, 335
MboI	GATC	3 cut(s)	22, 208, 333
MboII	GAAGA	3 cut(s)	415, 587, 773
MflI	RGATCY	1 cut(s)	333
MluCI	AATT	4 cut(s)	47, 309, 430, 436
MlyI	GAGTC	2 cut(s)	284, 723
MnlI	CCTC	7 cut(s)	135, 228, 322, 344, 459, 648, 740
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	2 cut(s)	141, 435
MslI	CAYNNNNRTG	3 cut(s)	564, 664, 789
MspA1I	CMGCKG	3 cut(s)	216, 272, 458
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	463
Mva1269I	GAATGC	1 cut(s)	721
MvaI	CCWGG	1 cut(s)	463
MvnI	CGCG	2 cut(s)	397, 399
MwoI	GCNNNNNNNGC	3 cut(s)	66, 642, 830
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	3 cut(s)	22, 208, 333
NlaIII	CATG	7 cut(s)	115, 282, 308, 362, 483, 817, 850
NlaIV	GGNNCC	2 cut(s)	335, 356
NmuCI	GTSAC	3 cut(s)	94, 620, 842
NspI	RCATGY	1 cut(s)	115
PaqCI	CACCTGC	1 cut(s)	844
PctI	GAATGC	1 cut(s)	721
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	4 cut(s)	7, 271, 460, 770
PleI	GAGTC	2 cut(s)	283, 722
PpsI	GAGTC	2 cut(s)	283, 722
PpuMI	RGGWCCY	1 cut(s)	487
Psp5II	RGGWCCY	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	461
PspEI	GGTNACC	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	461
PspN4I	GGNNCC	2 cut(s)	335, 356
PspPI	GGNCC	1 cut(s)	487
PspPPI	RGGWCCY	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	333
PvuII	CAGCTG	2 cut(s)	272, 458
RsaI	GTAC	2 cut(s)	120, 392
RsaNI	GTAC	2 cut(s)	119, 391
RseI	CAYNNNNRTG	3 cut(s)	564, 664, 789
SalI	GTCGAC	1 cut(s)	448
SaqAI	TTAA	2 cut(s)	141, 435
SatI	GCNGC	4 cut(s)	6, 270, 459, 769
Sau3AI	GATC	3 cut(s)	22, 208, 333
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	2 cut(s)	284, 723
ScrFI	CCNGG	1 cut(s)	463
SfaNI	GCATC	1 cut(s)	840
SinI	GGWCC	1 cut(s)	487
SmiMI	CAYNNNNRTG	3 cut(s)	564, 664, 789
Sse9I	AATT	4 cut(s)	47, 309, 430, 436
SsiI	CCGC	4 cut(s)	216, 314, 521, 768
SspI	AATATT	1 cut(s)	838
StyD4I	CCNGG	1 cut(s)	461
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	761
TaqI	TCGA	3 cut(s)	449, 564, 653
TasI	AATT	4 cut(s)	47, 309, 430, 436
TauI	GCSGC	1 cut(s)	771
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	2 cut(s)	141, 435
Tru9I	TTAA	2 cut(s)	141, 435
TseFI	GTSAC	3 cut(s)	94, 620, 842
TseI	GCWGC	3 cut(s)	5, 269, 458
Tsp45I	GTSAC	3 cut(s)	94, 620, 842
TspDTI	ATGAA	3 cut(s)	569, 773, 830
VpaK11BI	GGWCC	1 cut(s)	487
XapI	RAATTY	2 cut(s)	47, 309
XceI	RCATGY	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	449
XmnI	GAANNNNTTC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.