RchiOBHm_Chr6g0288711

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000837
Physical Location & Seq
Forward (+)
51873886 .. 51874099
214 bp
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UTR
Exon/CDS
Intron
PRQ25902

Sequence Viewer

Length: 213 bp
ATGGAGCTCTACTTTTGTGACTTTAAGAACTTAAGAAGCAGGTCAACTTTAATGGCAGTGGAGATCCGAAATTGTGTGCAAAATCAGGAGCAGATTGGAGAGACACTATTCTGCAGAGCCGTTGATGATAATTGGGACTTTGGGGCACTGCCACAAGTGTGCAGGTACTTTATTTTACCTCTAGAACCCATACGATTAACTAAGCCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

8.27

Weight (kDa)

5.21

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 30, 153
AclWI GGATC 1 cut(s) 58
AfaI GTAC 1 cut(s) 167
AflII CTTAAG 1 cut(s) 31
AleI CACNNNNGTG 1 cut(s) 157
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 9
BceAI ACGGC 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 1 cut(s) 112
BfrI CTTAAG 1 cut(s) 31
BfuAI ACCTGC 2 cut(s) 30, 153
BseSI GKGCMC 1 cut(s) 148
BsgI GTGCAG 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 9
BslFI GGGAC 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 9, 148
Bsp143I GATC 1 cut(s) 63
BspMAI CTGCAG 1 cut(s) 116
BspMI ACCTGC 2 cut(s) 30, 153
BspPI GGATC 1 cut(s) 58
BspTI CTTAAG 1 cut(s) 31
BssMI GATC 1 cut(s) 63
BstAFI CTTAAG 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 201
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 1 cut(s) 63
BstSFI CTRYAG 1 cut(s) 112
BstSLI GKGCMC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BtsI GCAGTG 2 cut(s) 63, 146
BtsIMutI CAGTG 2 cut(s) 63, 146
BveI ACCTGC 2 cut(s) 30, 153
Csp6I GTAC 1 cut(s) 166
CviJI RGCY 3 cut(s) 7, 119, 205
CviKI_1 RGCY 3 cut(s) 7, 119, 205
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 1 cut(s) 201
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 9
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 9
FaiI YATR 1 cut(s) 191
FaqI GGGAC 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 9
FspBI CTAG 1 cut(s) 182
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 2 cut(s) 86, 182
Hpy8I GTNNAC 1 cut(s) 45
HpyCH4V TGCA 3 cut(s) 79, 114, 162
HpyF3I CTNAG 1 cut(s) 201
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 2 cut(s) 4, 88
LpnPI CCDG 3 cut(s) 25, 71, 148
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 2 cut(s) 9, 148
MluCI AATT 2 cut(s) 70, 130
MnlI CCTC 1 cut(s) 189
MseI TTAA 4 cut(s) 24, 32, 50, 197
MslI CAYNNNNRTG 1 cut(s) 157
MspCI CTTAAG 1 cut(s) 31
NdeII GATC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 17
OliI CACNNNNGTG 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 9
PstI CTGCAG 1 cut(s) 116
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 157
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 4 cut(s) 24, 32, 50, 197
Sau3AI GATC 1 cut(s) 63
SduI GDGCHC 2 cut(s) 9, 148
SetI ASST 4 cut(s) 9, 44, 167, 181
SfcI CTRYAG 1 cut(s) 112
SgeI CNNG 5 cut(s) 52, 98, 167, 175, 194
SmiMI CAYNNNNRTG 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
Sse9I AATT 2 cut(s) 70, 130
SspMI CTAG 1 cut(s) 182
SstI GAGCTC 1 cut(s) 9
TasI AATT 2 cut(s) 70, 130
Tru1I TTAA 4 cut(s) 24, 32, 50, 197
Tru9I TTAA 4 cut(s) 24, 32, 50, 197
TscAI CASTG 2 cut(s) 63, 153
TseFI GTSAC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 17
TspRI CASTG 2 cut(s) 63, 153
Vha464I CTTAAG 1 cut(s) 31
XbaI TCTAGA 1 cut(s) 181
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.