RLG00000012367

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000837
Physical Location & Seq
Forward (+)
17950859 .. 17952562
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012367

Sequence Viewer

Length: 1062 bp
ATGGCAGCAGTTGTGGATTGTCATCAGCATGAGAAGGAGCTCAAAGCATTCGATGAAAGCAAAGCTGGCGTCAAAGGACTTGCAGACGCTGGGGTGACCAAGCTCCCAATCATGTTCATGCACCCTCCAGAGAATCTACTAAACTCATCATTCCCGGAAGATGATGAGCAATATCACAAAATTCGCAACCTTCAATTTCCGGTGATTGATCTCTGCGGTTTTGATAACAGCGAGAGGCGAAAAGAAATCGTCAATGACATAAACAAAGCAGCTGAGTCATGGGGCTTCTTTCAGTTGGTGAACCATGGAATTCCGCTTGGTGTTATGGAGGGTATCCAGAAAAGTATCCGAGGGTTTCATGAGCTTCCCCAGGAGGAGAAGGTGAAGTGGTACTCGCGCGATTTTACGCAGAAGGTTAACTTCTTCAGCAATGGAGACTTGAATGTGTCGACGCCAGCTGACTGGAGGGATACCTTGTCATGCAAGGTCCTGGAAGACCCAGAAAGCTTTGAAGCAATACCGCAAGTGTGCAGACGAGAAGTTAGTGAGTATATGAAACACATCGATGGAGTGCAAGAGAAGTTATCCGAGTTATTTTCAGAAGCTTTAGGTCTCAATAGTGATTATCTTGCAAGCGCAAGGTGCTTCAAATCGAGGTCACTGGCGTGCCACTATTTCCCGATTTGCCCTGAACCGCATTTGACTATGGGCGGAACCAAGCATTCGGACCTCGGCTTTCTCACCTTGCTCCTTCAAGACAGTGTTGGCGGCCTCCAAGTTCTTCATCAAAATGTTTGGATTGATGTTCCCCCAGTGAAGGGAGCTTTGCTAGCAAATATTGGTGACATGATGCAGATTATTACAAATGGCAAGTTCAAGAGTGTGGAGCATAGAGTTTTGATGAAACCAACCGCCGAGCCTCGTGTCTCAATTGCATGTTTCTTGGGTACGGATGACCTCCAAAAACAATATGGGCCGATAAAAGAACTTATATCAGAAAATAGTCTACCGATTTACAGTGAAGTTAAATTCGGAGAATACATGAAAAAGTATAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

354

Amino Acids

39.93

Weight (kDa)

5.68

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 67 - 166 3e-21 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 220 - 316 9.2e-31 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1060
AccI GTMKAC 2 cut(s) 449, 1006
AccII CGCG 2 cut(s) 397, 399
AciI CCGC 7 cut(s) 216, 314, 521, 695, 711, 768, 912
AcsI RAATTY 3 cut(s) 180, 309, 1028
AcuI CTGAAG 1 cut(s) 409
AcyI GRCGYC 2 cut(s) 69, 452
AfaI GTAC 2 cut(s) 392, 949
AfiI CCNNNNNNNGG 2 cut(s) 817, 818
AgsI TTSAA 6 cut(s) 194, 442, 512, 649, 755, 877
AjnI CCWGG 2 cut(s) 369, 489
AleI CACNNNNGTG 1 cut(s) 664
AluBI AGCT 9 cut(s) 40, 65, 103, 272, 364, 458, 507, 605, 824
AluI AGCT 9 cut(s) 40, 65, 103, 272, 364, 458, 507, 605, 824
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 3 cut(s) 429, 617, 931
AlwNI CAGNNNCTG 1 cut(s) 89
AoxI GGCC 2 cut(s) 769, 974
ApeKI GCWGC 2 cut(s) 5, 269
ApoI RAATTY 3 cut(s) 180, 309, 1028
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
AspLEI GCGC 2 cut(s) 399, 638
AspS9I GGNCC 3 cut(s) 487, 727, 974
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 6 cut(s) 106, 214, 310, 394, 733, 854
AsuNHI GCTAGC 1 cut(s) 829
AvaII GGWCC 2 cut(s) 487, 727
BanII GRGCYC 1 cut(s) 42
BauI CACGAG 1 cut(s) 921
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 17, 281
BccI CCATC 1 cut(s) 560
BciT130I CCWGG 2 cut(s) 371, 491
BciVI GTATCC 3 cut(s) 344, 356, 463
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 3 cut(s) 429, 617, 931
BfaI CTAG 1 cut(s) 830
BfuI GTATCC 3 cut(s) 344, 356, 463
BisI GCNGC 3 cut(s) 6, 270, 769
BlsI GCNGC 3 cut(s) 7, 271, 770
Bme1390I CCNGG 3 cut(s) 155, 371, 491
Bme18I GGWCC 2 cut(s) 487, 727
BmgT120I GGNCC 3 cut(s) 487, 727, 974
BmiI GGNNCC 1 cut(s) 715
BmrFI CCNGG 3 cut(s) 155, 371, 491
BmrI ACTGGG 1 cut(s) 806
BmsI GCATC 1 cut(s) 840
BmtI GCTAGC 1 cut(s) 833
BmuI ACTGGG 1 cut(s) 806
BpiI GAAGAC 1 cut(s) 501
BpmI CTGGAG 2 cut(s) 111, 484
BpuMI CCSGG 1 cut(s) 155
Bsa29I ATCGAT 1 cut(s) 564
BsaBI GATNNNNATC 1 cut(s) 21
BsaHI GRCGYC 2 cut(s) 69, 452
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 4 cut(s) 304, 349, 369, 730
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 2 cut(s) 817, 818
Bse1I ACTGG 3 cut(s) 467, 666, 812
Bse3DI GCAATG 1 cut(s) 436
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 2 cut(s) 371, 491
BseCI ATCGAT 1 cut(s) 564
BseDI CCNNGG 4 cut(s) 304, 349, 369, 730
BseGI GGATG 1 cut(s) 958
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 817, 818
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 3 cut(s) 467, 666, 812
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 2 cut(s) 17, 281
BseYI CCCAGC 1 cut(s) 89
BsgI GTGCAG 1 cut(s) 550
Bsh1236I CGCG 2 cut(s) 397, 399
BshFI GGCC 2 cut(s) 771, 976
BshVI ATCGAT 1 cut(s) 564
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 2 cut(s) 155, 200
BslI CCNNNNNNNGG 2 cut(s) 817, 818
BsmAI GTCTC 3 cut(s) 429, 617, 931
BsmI GAATGC 2 cut(s) 47, 721
BsnI GGCC 2 cut(s) 771, 976
Bso31I GGTCTC 1 cut(s) 617
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 208
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 7 cut(s) 216, 314, 521, 695, 711, 768, 912
BspANI GGCC 2 cut(s) 771, 976
BspCNI CTCAG 1 cut(s) 265
BspDI ATCGAT 1 cut(s) 564
BspFNI CGCG 2 cut(s) 397, 399
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 715
BspOI GCTAGC 1 cut(s) 833
BspTNI GGTCTC 1 cut(s) 617
BsrDI GCAATG 1 cut(s) 436
BsrI ACTGG 3 cut(s) 467, 666, 812
BssECI CCNNGG 4 cut(s) 304, 349, 369, 730
BssMI GATC 1 cut(s) 208
BssNI GRCGYC 2 cut(s) 69, 452
BssSI CACGAG 1 cut(s) 921
BssT1I CCWWGG 1 cut(s) 304
Bst2BI CACGAG 1 cut(s) 921
Bst2UI CCWGG 2 cut(s) 371, 491
Bst4CI ACNGT 2 cut(s) 761, 1019
BstACI GRCGYC 2 cut(s) 69, 452
BstC8I GCNNGC 5 cut(s) 67, 456, 634, 667, 831
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 304
BstEII GGTNACC 1 cut(s) 94
BstF5I GGATG 1 cut(s) 958
BstFNI CGCG 2 cut(s) 397, 399
BstHHI GCGC 2 cut(s) 399, 638
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 3 cut(s) 429, 617, 931
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 3 cut(s) 66, 642, 830
BstNI CCWGG 2 cut(s) 371, 491
BstNSI RCATGY 1 cut(s) 939
BstPI GGTNACC 1 cut(s) 94
BstSCI CCNGG 3 cut(s) 153, 369, 489
BstUI CGCG 2 cut(s) 397, 399
BstV1I GCAGC 2 cut(s) 17, 281
BstV2I GAAGAC 1 cut(s) 501
BstXI CCANNNNNNTGG 1 cut(s) 462
Bsu15I ATCGAT 1 cut(s) 564
BsuI GTATCC 3 cut(s) 344, 356, 463
BsuRI GGCC 2 cut(s) 771, 976
BsuTUI ATCGAT 1 cut(s) 564
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 1 cut(s) 958
BtsIMutI CAGTG 4 cut(s) 659, 766, 819, 1024
Cac8I GCNNGC 5 cut(s) 67, 456, 634, 667, 831
CaiI CAGNNNCTG 1 cut(s) 89
CciI TCATGA 1 cut(s) 358
CfoI GCGC 2 cut(s) 399, 638
Cfr13I GGNCC 3 cut(s) 487, 727, 974
ClaI ATCGAT 1 cut(s) 564
CseI GACGC 3 cut(s) 58, 95, 460
Csp6I GTAC 2 cut(s) 391, 948
CviQI GTAC 2 cut(s) 391, 948
DdeI CTNAG 1 cut(s) 273
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
EciI GGCGGA 1 cut(s) 726
Ecl136II GAGCTC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 617
Eco47I GGWCC 2 cut(s) 487, 727
Eco53kI GAGCTC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 409
Eco91I GGTNACC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 487
EcoO65I GGTNACC 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 309
EcoRII CCWGG 2 cut(s) 369, 489
EcoT14I CCWWGG 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 304
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FblI GTMKAC 2 cut(s) 449, 1006
Fnu4HI GCNGC 3 cut(s) 6, 270, 769
FokI GGATG 1 cut(s) 965
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 3 cut(s) 6, 270, 769
FspBI CTAG 1 cut(s) 830
GlaI GCGC 2 cut(s) 398, 637
GluI GCNGC 3 cut(s) 6, 270, 769
GsaI CCCAGC 1 cut(s) 93
GsuI CTGGAG 2 cut(s) 111, 484
HaeIII GGCC 2 cut(s) 771, 976
HapII CCGG 2 cut(s) 155, 200
HgaI GACGC 3 cut(s) 58, 95, 460
HhaI GCGC 2 cut(s) 399, 638
Hin1I GRCGYC 2 cut(s) 69, 452
Hin6I GCGC 2 cut(s) 397, 636
HinP1I GCGC 2 cut(s) 397, 636
HincII GTYRAC 2 cut(s) 418, 450
HindII GTYRAC 2 cut(s) 418, 450
HindIII AAGCTT 2 cut(s) 505, 603
HinfI GANTC 2 cut(s) 133, 275
HpaI GTTAAC 1 cut(s) 418
HpaII CCGG 2 cut(s) 155, 200
HphI GGTGA 6 cut(s) 106, 214, 310, 394, 733, 854
Hpy166II GTNNAC 4 cut(s) 301, 418, 450, 1007
Hpy188I TCNGA 6 cut(s) 350, 589, 601, 727, 997, 1034
Hpy188III TCNNGA 6 cut(s) 128, 337, 359, 679, 755, 877
Hpy8I GTNNAC 4 cut(s) 301, 418, 450, 1007
Hpy99I CGWCG 1 cut(s) 454
HpyAV CCTTC 6 cut(s) 28, 200, 373, 406, 761, 811
HpyCH4III ACNGT 2 cut(s) 761, 1019
HpyCH4V TGCA 8 cut(s) 83, 121, 483, 531, 574, 632, 853, 935
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 642, 830
HpyF3I CTNAG 1 cut(s) 273
Hsp92I GRCGYC 2 cut(s) 69, 452
HspAI GCGC 2 cut(s) 397, 636
KspAI GTTAAC 1 cut(s) 418
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 5 cut(s) 37, 108, 753, 821, 886
Lsp1109I GCAGC 2 cut(s) 17, 281
LweI GCATC 1 cut(s) 840
MaeI CTAG 1 cut(s) 830
MaeIII GTNAC 3 cut(s) 94, 657, 842
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 4 cut(s) 170, 415, 506, 773
MfeI CAATTG 1 cut(s) 930
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 6 cut(s) 180, 194, 309, 930, 1028, 1055
MlyI GAGTC 1 cut(s) 284
MseI TTAA 2 cut(s) 417, 1026
MslI CAYNNNNRTG 5 cut(s) 27, 116, 564, 664, 789
MspA1I CMGCKG 2 cut(s) 272, 458
MspI CCGG 2 cut(s) 155, 200
MspR9I CCNGG 3 cut(s) 155, 371, 491
MunI CAATTG 1 cut(s) 930
Mva1269I GAATGC 2 cut(s) 47, 721
MvaI CCWGG 2 cut(s) 371, 491
MvnI CGCG 2 cut(s) 397, 399
MwoI GCNNNNNNNGC 3 cut(s) 66, 642, 830
NciI CCSGG 1 cut(s) 155
NcoI CCATGG 1 cut(s) 304
NdeII GATC 1 cut(s) 208
NheI GCTAGC 1 cut(s) 829
NlaIV GGNNCC 1 cut(s) 715
NmeAIII GCCGAG 2 cut(s) 711, 940
NmuCI GTSAC 3 cut(s) 94, 657, 842
NspI RCATGY 1 cut(s) 939
OliI CACNNNNGTG 1 cut(s) 664
PagI TCATGA 1 cut(s) 358
PctI GAATGC 2 cut(s) 47, 721
PfeI GAWTC 1 cut(s) 133
PfoI TCCNGGA 2 cut(s) 153, 489
PkrI GCNGC 3 cut(s) 7, 271, 770
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 487
PsiI TTATAA 1 cut(s) 1060
Psp124BI GAGCTC 1 cut(s) 42
Psp5II RGGWCCY 1 cut(s) 487
Psp6I CCWGG 2 cut(s) 369, 489
PspEI GGTNACC 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 89
PspGI CCWGG 2 cut(s) 369, 489
PspN4I GGNNCC 1 cut(s) 715
PspPI GGNCC 3 cut(s) 487, 727, 974
PspPPI RGGWCCY 1 cut(s) 487
PstNI CAGNNNCTG 1 cut(s) 89
PvuII CAGCTG 2 cut(s) 272, 458
RsaI GTAC 2 cut(s) 392, 949
RsaNI GTAC 2 cut(s) 391, 948
RseI CAYNNNNRTG 5 cut(s) 27, 116, 564, 664, 789
SacI GAGCTC 1 cut(s) 42
SalI GTCGAC 1 cut(s) 448
SaqAI TTAA 2 cut(s) 417, 1026
SatI GCNGC 3 cut(s) 6, 270, 769
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 3 cut(s) 487, 727, 974
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 3 cut(s) 155, 371, 491
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 1 cut(s) 840
SinI GGWCC 2 cut(s) 487, 727
SmiMI CAYNNNNRTG 5 cut(s) 27, 116, 564, 664, 789
Sse9I AATT 6 cut(s) 180, 194, 309, 930, 1028, 1055
SsiI CCGC 7 cut(s) 216, 314, 521, 695, 711, 768, 912
SspI AATATT 1 cut(s) 838
SspMI CTAG 1 cut(s) 830
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 3 cut(s) 153, 369, 489
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 2 cut(s) 761, 1019
TaqI TCGA 4 cut(s) 51, 449, 564, 653
TasI AATT 6 cut(s) 180, 194, 309, 930, 1028, 1055
TauI GCSGC 1 cut(s) 771
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 2 cut(s) 417, 1026
Tru9I TTAA 2 cut(s) 417, 1026
TscAI CASTG 4 cut(s) 666, 766, 819, 1024
TseFI GTSAC 3 cut(s) 94, 657, 842
TseI GCWGC 2 cut(s) 5, 269
Tsp45I GTSAC 3 cut(s) 94, 657, 842
TspDTI ATGAA 7 cut(s) 69, 106, 347, 569, 773, 917, 1058
TspGWI ACGGA 1 cut(s) 965
TspRI CASTG 4 cut(s) 666, 766, 819, 1024
VpaK11BI GGWCC 2 cut(s) 487, 727
XapI RAATTY 3 cut(s) 180, 309, 1028
XceI RCATGY 1 cut(s) 939
XcmI CCANNNNNNNNNTGG 1 cut(s) 968
XmiI GTMKAC 2 cut(s) 449, 1006
XspI CTAG 1 cut(s) 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.