FvH4_3g05830

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000733
Physical Location & Seq
Forward (+)
3395556 .. 3397623
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05830.t1

Sequence Viewer

Length: 1431 bp
ATGTCAGAAATGGTTAAGGAGCTTCATGTTGTGATGCTTCCATGGTCTGCCTTTGGCCATTTGATGCCCTTCTTTCAACTCTCCATAGCCTTGGCCAAGGCCAAAGTTCATGTATCCTTTATATCGACACCCAGAAACATCGAAAGGCTCCCCAAAATCCCACCCGACTTGCAACCTTTCATAAACCTAGTCCCCATTCCCTTTCCTCCTCTGGAACCTGACTTCTTGCCGGAAGGAGCTGAGGCCAGTGTCGATGTACCCGTACAACAGTATGCAAACTTACAGGTCGCAGTTGATCTTCTCCAAACACCAATCAAGCAGTTCATTGCAGATAAAATGCCAGATTGGATTATAGCCGATTTCTTTACTCACTGGGTGGTCGACATTGCTAAAGAGTATGATGTTCCACTAGCCTACTTCTCAGTTTTCAGTGCTGCAGCCTGTGTTTTCTTTGGCCCCCCTGAACATCTCACTGGTGCAACCAGAAACGGTGTTCTCCAAACTAGACAAAGCTTGACATCTCCACGAGAATGGATCACTTTTCCTTCTTTGCTGGCATTGAAGGACTATGAAGCCGTTGAACAGCTTCTCTCTTGGGAAGTAAATAAAACTGGGATCAGTGGGATGTGTTTTACTTGGAGGCTTGCCAGGATCGTATCAGCAAGTCAAGTTTTGGCGATTCGTACTTGCAGTGAGATTGAAGGAGACTACTTGGAAGTGTACAAGAAAATTACTGGAAAGCCAGTGATTCCCACTGGTGTACTTCCTCCTGATCAACCTGGGAAAAGGGCAGAAGGGGAAGTAAACTCCGATGCGTCTATGTTTGATTGGCTTGATAAGCAAAAACCCAGGTCAGTTGTGTTTGTGGGGTTCGGGAGTGAGTGTAGGTTAAGCAAAGAACAAGTTCATGAGATGGCTCATGGGCTGGAGCTATCGGAACTGCCATTTTTTTGGGGACTCAGAAAACCCAATTCAACTAGGAGTGATGAAGCGGATGATTTTTTGCCTTTAGGTTTTACTGACAGAACATCAGAGAAAGGGCTTGTTTGCTTCGGATGGGTGCCCCAAATGGAAATTTTGGGGCACCCATCAATTGGGGGCTCTTTGTTTCATTCTGGTTGGGGTTCGGTGATTGAGACTCTGCAATTTGGGCATTGCCTTGTTGTGTTACCCTTCGTGTATGATCAGCCTTTGAATGCAAGGCTTCTGGTAGAGAAGGGTCTGGCTGCCGAAGTGAAGCGCAACGAAGACGGGTCGTTTAGTAGAGAGGAAATAGCAAAATCACTGAGGTTAGCAATGGTGGAAGAAGAAGGAGAGCAGCTGAGAAGCAATGCGAGGAAAGCTGCTGCAGTTATTGGAGATCACAAGCTGCAACATGATCACTACATTGGTGCATTCGTTAACTATCTTAAAAATAATGTCGCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

477

Amino Acids

53.23

Weight (kDa)

5.53

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 282 - 416 3.5e-14 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1060, 1083
AccB7I CCANNNNNTGG 1 cut(s) 1094
AccI GTMKAC 1 cut(s) 381
AciI CCGC 1 cut(s) 992
AclWI GGATC 3 cut(s) 542, 623, 659
AcoI YGGCCR 2 cut(s) 55, 93
AcsI RAATTY 1 cut(s) 1074
AdeI CACNNNGTG 1 cut(s) 376
AfaI GTAC 5 cut(s) 258, 264, 685, 722, 762
AfiI CCNNNNNNNGG 1 cut(s) 1094
AgsI TTSAA 6 cut(s) 77, 562, 581, 701, 975, 1195
AjnI CCWGG 3 cut(s) 647, 778, 848
AluBI AGCT 8 cut(s) 22, 239, 513, 586, 931, 1321, 1343, 1369
AluI AGCT 8 cut(s) 22, 239, 513, 586, 931, 1321, 1343, 1369
Alw26I GTCTC 2 cut(s) 699, 1130
AlwI GGATC 3 cut(s) 542, 623, 659
AoxI GGCC 5 cut(s) 55, 93, 99, 243, 454
ApeKI GCWGC 7 cut(s) 434, 437, 1226, 1318, 1343, 1346, 1369
ApoI RAATTY 1 cut(s) 1074
Asp700I GAANNNNTTC 2 cut(s) 585, 903
AspLEI GCGC 1 cut(s) 1242
AspS9I GGNCC 1 cut(s) 455
AsuHPI GGTGA 1 cut(s) 1141
BaeGI GKGCMC 2 cut(s) 1065, 1086
BalI TGGCCA 2 cut(s) 57, 95
BanI GGYRCC 2 cut(s) 1060, 1083
BanII GRGCYC 1 cut(s) 1103
BauI CACGAG 1 cut(s) 525
BbsI GAAGAC 1 cut(s) 1254
BbvCI CCTCAGC 1 cut(s) 240
BbvI GCAGC 7 cut(s) 421, 449, 1213, 1330, 1330, 1333, 1356
BccI CCATC 3 cut(s) 907, 1050, 1096
BceAI ACGGC 1 cut(s) 560
BciT130I CCWGG 3 cut(s) 649, 780, 850
BciVI GTATCC 1 cut(s) 124
BclI TGATCA 3 cut(s) 772, 1183, 1378
BcoDI GTCTC 2 cut(s) 699, 1130
BfaI CTAG 4 cut(s) 188, 410, 504, 978
BfmI CTRYAG 2 cut(s) 435, 1347
BfuI GTATCC 1 cut(s) 124
BisI GCNGC 7 cut(s) 435, 438, 1227, 1319, 1344, 1347, 1370
BlsI GCNGC 7 cut(s) 436, 439, 1228, 1320, 1345, 1348, 1371
Bme1390I CCNGG 3 cut(s) 649, 780, 850
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 5 cut(s) 149, 216, 457, 1062, 1085
BmrFI CCNGG 3 cut(s) 649, 780, 850
BmrI ACTGGG 2 cut(s) 382, 621
BmsI GCATC 3 cut(s) 24, 54, 802
BmuI ACTGGG 2 cut(s) 382, 621
BpiI GAAGAC 1 cut(s) 1254
BpmI CTGGAG 1 cut(s) 947
Bpu10I CCTNAGC 1 cut(s) 240
BsaJI CCNNGG 5 cut(s) 41, 90, 96, 779, 848
BsaXI ACNNNNNCTCC 2 cut(s) 868, 898
Bsc4I CCNNNNNNNGG 1 cut(s) 1094
Bse1I ACTGG 7 cut(s) 246, 377, 478, 616, 739, 743, 760
Bse3DI GCAATG 5 cut(s) 324, 384, 1153, 1302, 1336
BseBI CCWGG 3 cut(s) 649, 780, 850
BseDI CCNNGG 5 cut(s) 41, 90, 96, 779, 848
BseGI GGATG 3 cut(s) 630, 1000, 1061
BseLI CCNNNNNNNGG 1 cut(s) 1094
BseMI GCAATG 5 cut(s) 324, 384, 1153, 1302, 1336
BseMII CTCAG 5 cut(s) 231, 435, 973, 1277, 1313
BseNI ACTGG 7 cut(s) 246, 377, 478, 616, 739, 743, 760
BseRI GAGGAG 1 cut(s) 198
BseSI GKGCMC 2 cut(s) 1065, 1086
BseXI GCAGC 7 cut(s) 421, 449, 1213, 1330, 1330, 1333, 1356
BshFI GGCC 5 cut(s) 57, 95, 101, 245, 456
BshNI GGYRCC 2 cut(s) 1060, 1083
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 2 cut(s) 176, 969
BslI CCNNNNNNNGG 1 cut(s) 1094
BsmAI GTCTC 2 cut(s) 699, 1130
BsmFI GGGAC 2 cut(s) 176, 969
BsmI GAATGC 2 cut(s) 1201, 1394
BsnI GGCC 5 cut(s) 57, 95, 101, 245, 456
Bsp1286I GDGCHC 3 cut(s) 1065, 1086, 1103
Bsp1407I TGTACA 1 cut(s) 720
Bsp143I GATC 8 cut(s) 295, 534, 615, 651, 772, 1183, 1360, 1378
Bsp19I CCATGG 1 cut(s) 41
BspACI CCGC 1 cut(s) 992
BspANI GGCC 5 cut(s) 57, 95, 101, 245, 456
BspCNI CTCAG 5 cut(s) 232, 434, 972, 1278, 1314
BspHI TCATGA 1 cut(s) 907
BspLI GGNNCC 5 cut(s) 149, 216, 457, 1062, 1085
BspMAI CTGCAG 2 cut(s) 439, 1351
BspPI GGATC 3 cut(s) 542, 623, 659
BspT107I GGYRCC 2 cut(s) 1060, 1083
BsrDI GCAATG 5 cut(s) 324, 384, 1153, 1302, 1336
BsrGI TGTACA 1 cut(s) 720
BsrI ACTGG 7 cut(s) 246, 377, 478, 616, 739, 743, 760
BssECI CCNNGG 5 cut(s) 41, 90, 96, 779, 848
BssMI GATC 8 cut(s) 295, 534, 615, 651, 772, 1183, 1360, 1378
BssSI CACGAG 1 cut(s) 525
BssT1I CCWWGG 3 cut(s) 41, 90, 96
Bst2BI CACGAG 1 cut(s) 525
Bst2UI CCWGG 3 cut(s) 649, 780, 850
Bst4CI ACNGT 2 cut(s) 270, 491
BstAUI TGTACA 1 cut(s) 720
BstC8I GCNNGC 2 cut(s) 555, 645
BstDEI CTNAG 5 cut(s) 240, 421, 959, 1286, 1322
BstDSI CCRYGG 1 cut(s) 41
BstF5I GGATG 3 cut(s) 630, 1000, 1061
BstHHI GCGC 1 cut(s) 1242
BstKTI GATC 8 cut(s) 298, 537, 618, 654, 775, 1186, 1363, 1381
BstMAI GTCTC 2 cut(s) 699, 1130
BstMBI GATC 8 cut(s) 295, 534, 615, 651, 772, 1183, 1360, 1378
BstMWI GCNNNNNNNGC 3 cut(s) 838, 1150, 1340
BstNI CCWGG 3 cut(s) 649, 780, 850
BstSCI CCNGG 3 cut(s) 647, 778, 848
BstSFI CTRYAG 2 cut(s) 435, 1347
BstSLI GKGCMC 2 cut(s) 1065, 1086
BstV1I GCAGC 7 cut(s) 421, 449, 1213, 1330, 1330, 1333, 1356
BstV2I GAAGAC 1 cut(s) 1254
BstXI CCANNNNNNTGG 3 cut(s) 91, 531, 951
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 5 cut(s) 57, 95, 101, 245, 456
BtgI CCRYGG 1 cut(s) 41
BtsCI GGATG 3 cut(s) 630, 1000, 1061
BtsI GCAGTG 1 cut(s) 697
BtsIMutI CAGTG 9 cut(s) 253, 370, 436, 471, 625, 697, 750, 753, 1283
Cac8I GCNNGC 2 cut(s) 555, 645
CciI TCATGA 1 cut(s) 907
CfoI GCGC 1 cut(s) 1242
Cfr13I GGNCC 1 cut(s) 455
CseI GACGC 1 cut(s) 804
Csp6I GTAC 5 cut(s) 257, 263, 684, 721, 761
CspCI CAANNNNNGTGG 2 cut(s) 150, 185
CviAII CATG 6 cut(s) 26, 42, 110, 908, 920, 1376
CviQI GTAC 5 cut(s) 257, 263, 684, 721, 761
DdeI CTNAG 5 cut(s) 240, 421, 959, 1286, 1322
DpnI GATC 8 cut(s) 297, 536, 617, 653, 774, 1185, 1362, 1380
DpnII GATC 8 cut(s) 295, 534, 615, 651, 772, 1183, 1360, 1378
DraIII CACNNNGTG 1 cut(s) 376
EaeI YGGCCR 2 cut(s) 55, 93
Eco130I CCWWGG 3 cut(s) 41, 90, 96
Eco24I GRGCYC 1 cut(s) 1103
EcoRII CCWGG 3 cut(s) 647, 778, 848
EcoT14I CCWWGG 3 cut(s) 41, 90, 96
EcoT38I GRGCYC 1 cut(s) 1103
ErhI CCWWGG 3 cut(s) 41, 90, 96
FaeI CATG 6 cut(s) 29, 45, 113, 911, 923, 1379
FaqI GGGAC 2 cut(s) 176, 969
FatI CATG 6 cut(s) 25, 41, 109, 907, 919, 1375
FbaI TGATCA 3 cut(s) 772, 1183, 1378
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 7 cut(s) 435, 438, 1227, 1319, 1344, 1347, 1370
FokI GGATG 3 cut(s) 637, 1007, 1068
FriOI GRGCYC 1 cut(s) 1103
Fsp4HI GCNGC 7 cut(s) 435, 438, 1227, 1319, 1344, 1347, 1370
FspBI CTAG 4 cut(s) 188, 410, 504, 978
GlaI GCGC 1 cut(s) 1241
GluI GCNGC 7 cut(s) 435, 438, 1227, 1319, 1344, 1347, 1370
GsuI CTGGAG 1 cut(s) 947
HaeIII GGCC 5 cut(s) 57, 95, 101, 245, 456
HapII CCGG 1 cut(s) 230
HgaI GACGC 1 cut(s) 804
HhaI GCGC 1 cut(s) 1242
Hin1II CATG 6 cut(s) 29, 45, 113, 911, 923, 1379
Hin6I GCGC 1 cut(s) 1240
HinP1I GCGC 1 cut(s) 1240
HincII GTYRAC 2 cut(s) 382, 1402
HindII GTYRAC 2 cut(s) 382, 1402
HindIII AAGCTT 1 cut(s) 511
HinfI GANTC 4 cut(s) 679, 748, 957, 1138
HpaI GTTAAC 1 cut(s) 1402
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 1141
Hpy166II GTNNAC 5 cut(s) 382, 721, 761, 805, 1402
Hpy188I TCNGA 6 cut(s) 7, 811, 937, 962, 1033, 1055
Hpy188III TCNNGA 4 cut(s) 212, 770, 874, 908
Hpy8I GTNNAC 5 cut(s) 382, 721, 761, 805, 1402
HpyAV CCTTC 9 cut(s) 79, 227, 555, 556, 695, 788, 1183, 1210, 1304
HpyCH4III ACNGT 2 cut(s) 270, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 838, 1150, 1340
HpyF3I CTNAG 5 cut(s) 240, 421, 959, 1286, 1322
Hsp92II CATG 6 cut(s) 29, 45, 113, 911, 923, 1379
HspAI GCGC 1 cut(s) 1240
Ksp22I TGATCA 3 cut(s) 772, 1183, 1378
KspAI GTTAAC 1 cut(s) 1402
Kzo9I GATC 8 cut(s) 295, 534, 615, 651, 772, 1183, 1360, 1378
LmnI GCTCC 4 cut(s) 19, 153, 236, 928
Lsp1109I GCAGC 7 cut(s) 421, 449, 1213, 1330, 1330, 1333, 1356
LweI GCATC 3 cut(s) 24, 54, 802
MaeI CTAG 4 cut(s) 188, 410, 504, 978
MaeIII GTNAC 1 cut(s) 1167
MalI GATC 8 cut(s) 297, 536, 617, 653, 774, 1185, 1362, 1380
MboI GATC 8 cut(s) 295, 534, 615, 651, 772, 1183, 1360, 1378
MboII GAAGA 4 cut(s) 290, 1259, 1316, 1319
MfeI CAATTG 1 cut(s) 1092
MhlI GDGCHC 3 cut(s) 1065, 1086, 1103
MlsI TGGCCA 2 cut(s) 57, 95
MluCI AATT 5 cut(s) 729, 970, 1074, 1092, 1145
MluNI TGGCCA 2 cut(s) 57, 95
MlyI GAGTC 2 cut(s) 951, 1132
MnlI CCTC 8 cut(s) 216, 219, 235, 633, 777, 1261, 1281, 1329
Mox20I TGGCCA 2 cut(s) 57, 95
MroXI GAANNNNTTC 2 cut(s) 585, 903
MscI TGGCCA 2 cut(s) 57, 95
MseI TTAA 4 cut(s) 15, 890, 1401, 1410
MslI CAYNNNNRTG 1 cut(s) 529
Msp20I TGGCCA 2 cut(s) 57, 95
MspA1I CMGCKG 1 cut(s) 1321
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 3 cut(s) 649, 780, 850
MunI CAATTG 1 cut(s) 1092
Mva1269I GAATGC 2 cut(s) 1201, 1394
MvaI CCWGG 3 cut(s) 649, 780, 850
MwoI GCNNNNNNNGC 3 cut(s) 838, 1150, 1340
NcoI CCATGG 1 cut(s) 41
NdeII GATC 8 cut(s) 295, 534, 615, 651, 772, 1183, 1360, 1378
NlaIII CATG 6 cut(s) 29, 45, 113, 911, 923, 1379
NlaIV GGNNCC 5 cut(s) 149, 216, 457, 1062, 1085
PagI TCATGA 1 cut(s) 907
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PctI GAATGC 2 cut(s) 1201, 1394
PdmI GAANNNNTTC 2 cut(s) 585, 903
PfeI GAWTC 2 cut(s) 679, 748
PflMI CCANNNNNTGG 1 cut(s) 1094
PkrI GCNGC 7 cut(s) 436, 439, 1228, 1320, 1345, 1348, 1371
PleI GAGTC 2 cut(s) 951, 1132
PpsI GAGTC 2 cut(s) 951, 1132
Psp6I CCWGG 3 cut(s) 647, 778, 848
PspGI CCWGG 3 cut(s) 647, 778, 848
PspN4I GGNNCC 5 cut(s) 149, 216, 457, 1062, 1085
PspPI GGNCC 1 cut(s) 455
PstI CTGCAG 2 cut(s) 439, 1351
PvuII CAGCTG 1 cut(s) 1321
RsaI GTAC 5 cut(s) 258, 264, 685, 722, 762
RsaNI GTAC 5 cut(s) 257, 263, 684, 721, 761
RseI CAYNNNNRTG 1 cut(s) 529
SalI GTCGAC 1 cut(s) 380
SaqAI TTAA 4 cut(s) 15, 890, 1401, 1410
SatI GCNGC 7 cut(s) 435, 438, 1227, 1319, 1344, 1347, 1370
Sau3AI GATC 8 cut(s) 295, 534, 615, 651, 772, 1183, 1360, 1378
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 2 cut(s) 951, 1132
ScrFI CCNGG 3 cut(s) 649, 780, 850
SduI GDGCHC 3 cut(s) 1065, 1086, 1103
SfaNI GCATC 3 cut(s) 24, 54, 802
SfcI CTRYAG 2 cut(s) 435, 1347
SmiMI CAYNNNNRTG 1 cut(s) 529
Sse9I AATT 5 cut(s) 729, 970, 1074, 1092, 1145
SsiI CCGC 1 cut(s) 992
SspMI CTAG 4 cut(s) 188, 410, 504, 978
StyD4I CCNGG 3 cut(s) 647, 778, 848
StyI CCWWGG 3 cut(s) 41, 90, 96
TaaI ACNGT 2 cut(s) 270, 491
TaqI TCGA 4 cut(s) 125, 141, 252, 381
TasI AATT 5 cut(s) 729, 970, 1074, 1092, 1145
TatI WGTACW 2 cut(s) 720, 760
TfiI GAWTC 2 cut(s) 679, 748
Tru1I TTAA 4 cut(s) 15, 890, 1401, 1410
Tru9I TTAA 4 cut(s) 15, 890, 1401, 1410
TscAI CASTG 9 cut(s) 253, 377, 436, 478, 625, 697, 750, 760, 1290
TseI GCWGC 7 cut(s) 434, 437, 1226, 1318, 1343, 1346, 1369
TspDTI ATGAA 8 cut(s) 14, 98, 169, 313, 585, 896, 1002, 1100
TspRI CASTG 9 cut(s) 253, 377, 436, 478, 625, 697, 750, 760, 1290
Van91I CCANNNNNTGG 1 cut(s) 1094
XapI RAATTY 1 cut(s) 1074
XmiI GTMKAC 1 cut(s) 381
XmnI GAANNNNTTC 2 cut(s) 585, 903
XspI CTAG 4 cut(s) 188, 410, 504, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.