Rh1DG263000

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000733
Physical Location & Seq
Forward (+)
48028939 .. 48029376
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG263000.1

Sequence Viewer

Length: 438 bp
ATGGCAAAAGAGCTTCATGTTGTGATTCTTCCATGGTCTGCCTTTGGCCATATCATTCCTTTGATTCAACTCTCCAGAGCCTTAGCAAAAGCCAAGATTCATGTCTCCTTCATATCTACCCCCAAAAACATCCAAAGGCTCCCTAAAATCCCACCTGAGTTGCAATCTCTCATAACAATAGTGCCTTTTCCTTTGCCAATTTTGGATGCTGCAGATCGGCTGTTGCCTGAAGGCGCCGAGGCCACGGTGGACATACCTTTCGAGAAAATGGACGACTTGAAGTTTGCATTTGATCTTCTACGACAACCCTTTAAGCAATTCATTGCTGATCAAGTGCCGATTGGATCATCACCGATTTTGCTGCCCACTGGGCGGTTGACGTTGCCAAAGAGTATAGTGTTCCTGTTGCCTACTTCTCTCCTTTCTCTGCTGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

145

Amino Acids

16.06

Weight (kDa)

9.1

Isoelectric Point (pI)

52.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 233
AciI CCGC 1 cut(s) 373
AclWI GGATC 1 cut(s) 352
AcoI YGGCCR 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 372
AgsI TTSAA 2 cut(s) 68, 280
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 352
AoxI GGCC 2 cut(s) 46, 240
ApeKI GCWGC 3 cut(s) 209, 361, 430
ArsI GACNNNNNNTTYG 4 cut(s) 242, 266, 274, 298
AspLEI GCGC 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 342
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 1 cut(s) 233
BbvI GCAGC 3 cut(s) 196, 348, 417
BcgI CGANNNNNNTGC 2 cut(s) 343, 377
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 109
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 237
BglI GCCNNNNNGGC 1 cut(s) 370
BisI GCNGC 3 cut(s) 210, 362, 431
BlsI GCNGC 3 cut(s) 211, 363, 432
BmiI GGNNCC 2 cut(s) 140, 235
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 1 cut(s) 196
BmuI ACTGGG 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 3 cut(s) 32, 237, 243
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse1I ACTGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 321
BseDI CCNNGG 3 cut(s) 32, 237, 243
BseGI GGATG 2 cut(s) 129, 211
BseLI CCNNNNNNNGG 1 cut(s) 372
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 373
BseXI GCAGC 3 cut(s) 196, 348, 417
BshFI GGCC 2 cut(s) 48, 242
BshNI GGYRCC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 372
BsmAI GTCTC 1 cut(s) 109
BsnI GGCC 2 cut(s) 48, 242
Bsp143I GATC 4 cut(s) 214, 292, 328, 344
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 1 cut(s) 373
BspANI GGCC 2 cut(s) 48, 242
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 140, 235
BspMAI CTGCAG 1 cut(s) 214
BspPI GGATC 1 cut(s) 352
BspT107I GGYRCC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 321
BsrI ACTGG 1 cut(s) 373
BssECI CCNNGG 3 cut(s) 32, 237, 243
BssMI GATC 4 cut(s) 214, 292, 328, 344
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 82, 156
BstDSI CCRYGG 2 cut(s) 32, 243
BstF5I GGATG 2 cut(s) 129, 211
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 4 cut(s) 217, 295, 331, 347
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 4 cut(s) 214, 292, 328, 344
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 3 cut(s) 196, 348, 417
BsuRI GGCC 2 cut(s) 48, 242
BtgI CCRYGG 2 cut(s) 32, 243
BtsCI GGATG 2 cut(s) 129, 211
BtsIMutI CAGTG 1 cut(s) 366
CfoI GCGC 1 cut(s) 236
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 3 cut(s) 17, 33, 101
CviJI RGCY 7 cut(s) 13, 48, 80, 92, 139, 220, 242
CviKI_1 RGCY 7 cut(s) 13, 48, 80, 92, 139, 220, 242
DdeI CTNAG 2 cut(s) 82, 156
DinI GGCGCC 1 cut(s) 235
DpnI GATC 4 cut(s) 216, 294, 330, 346
DpnII GATC 4 cut(s) 214, 292, 328, 344
EaeI YGGCCR 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 32
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 3 cut(s) 20, 36, 104
FaiI YATR 9 cut(s) 18, 34, 51, 102, 113, 173, 254, 395, 436
FatI CATG 3 cut(s) 16, 32, 100
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 3 cut(s) 210, 362, 431
FokI GGATG 2 cut(s) 116, 218
Fsp4HI GCNGC 3 cut(s) 210, 362, 431
GlaI GCGC 1 cut(s) 235
GluI GCNGC 3 cut(s) 210, 362, 431
GsuI CTGGAG 1 cut(s) 58
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 2 cut(s) 48, 242
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 3 cut(s) 20, 36, 104
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 378
HindII GTYRAC 1 cut(s) 378
HinfI GANTC 3 cut(s) 25, 64, 97
HphI GGTGA 1 cut(s) 342
Hpy166II GTNNAC 2 cut(s) 250, 378
Hpy188III TCNNGA 2 cut(s) 75, 262
Hpy8I GTNNAC 2 cut(s) 250, 378
HpyAV CCTTC 2 cut(s) 118, 224
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 3 cut(s) 163, 212, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 2 cut(s) 82, 156
HpySE526I ACGT 1 cut(s) 380
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 3 cut(s) 20, 36, 104
HspAI GCGC 1 cut(s) 234
KasI GGCGCC 1 cut(s) 233
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 4 cut(s) 214, 292, 328, 344
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 5 cut(s) 88, 168, 240, 354, 416
Lsp1109I GCAGC 3 cut(s) 196, 348, 417
LweI GCATC 1 cut(s) 196
MaeII ACGT 1 cut(s) 380
MalI GATC 4 cut(s) 216, 294, 330, 346
MboI GATC 4 cut(s) 214, 292, 328, 344
MboII GAAGA 2 cut(s) 20, 287
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 2 cut(s) 198, 317
MluNI TGGCCA 1 cut(s) 48
Mly113I GGCGCC 1 cut(s) 234
MnlI CCTC 1 cut(s) 232
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MseI TTAA 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 370
NarI GGCGCC 1 cut(s) 234
NcoI CCATGG 1 cut(s) 32
NdeII GATC 4 cut(s) 214, 292, 328, 344
NlaIII CATG 3 cut(s) 20, 36, 104
NlaIV GGNNCC 2 cut(s) 140, 235
NmeAIII GCCGAG 1 cut(s) 262
PfeI GAWTC 3 cut(s) 25, 64, 97
PkrI GCNGC 3 cut(s) 211, 363, 432
PluTI GGCGCC 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 140, 235
PstI CTGCAG 1 cut(s) 214
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 3 cut(s) 210, 362, 431
Sau3AI GATC 4 cut(s) 214, 292, 328, 344
SetI ASST 4 cut(s) 15, 157, 259, 383
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 210
SfoI GGCGCC 1 cut(s) 235
Sse9I AATT 2 cut(s) 198, 317
SsiI CCGC 1 cut(s) 373
SspDI GGCGCC 1 cut(s) 233
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 1 cut(s) 383
TaqI TCGA 1 cut(s) 261
TasI AATT 2 cut(s) 198, 317
TfiI GAWTC 3 cut(s) 25, 64, 97
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 373
TseI GCWGC 3 cut(s) 209, 361, 430
TspDTI ATGAA 4 cut(s) 5, 89, 100, 310
TspRI CASTG 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.