FvH4_7g15020

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000733
Physical Location & Seq
Forward (+)
13106887 .. 13108413
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15020.t1

Sequence Viewer

Length: 1215 bp
ATGGTGCCCTTTCCTTTGCCAGCTTGGGATGCTGATCGGCTCGAAGGCGCCGAGGCCACGGTGGACATACCTTTCGAGAAGATGGACGACTTGAAGGTTGCATTTGATCTTCTAAAACAACCCTTTAAGCAGTTCATTGCTGATCAAGTACCAGATTGGATCATCAGCGACTTCGCTGCTCACTGGGCGGTTGACGTGTCCAAAGAGTACGGTGTTCCTCTTGCCTACTTCTCTCCTTTCTCTGCTGCTAATAACGTCTTCTGTGGTTCACCGGAATATCTCTTTAATGCTCCGCCGTCACCGGAAGTCTTCACCTCCCCACCGGAGTGGGTTCCTTTTCCGTCTTTGGTAGCACTCAAGGGATTTGAGGCAGTCCGTTGGCATGCAGGCGTTTATACTGTGAATCGTTCTGGGATATCTGATGCTGCAAGGTTTGCCAAGATTGTGGCAGGATGTCAAGTACTAGCTGTTCGTAGTTGCAATGAGATTGAAAGAGAGTACTTGGAGTTGCATGCGAAACTCACCGGAAAACCAGTGATTCCCACAGGTCTGCTACCTCCAAAGAATTCAAAAAGGGAGTCGGGGAATAATGATGTGACATTTGATTGGCTTGATAAACAGAAACCCAGGTCAGTTGTGTTTGTAGGGTTTGGGAGTGAGTGTAAGCTGAGCAAGGAGCAAGTGTATGGGATAGCTCATGGTCTGGAGCTTTCAGAGTTGCCATTTCTCTGGGCACTCAGAAAGCCCAGTTGGGCTAGTACTGATGCTGAGGCTCTACCTCTAGGTTTTATTGACAGAACATCAAAGAAAGGCCTTGTTTGCTTGGGATGGGTGCCACAAATCGAAATCCTGGGGCATCCATCAGTTGGGGGCTCTCTGTTTCACGCTGGATGGGGTTCTGTGATTGAAACTCTGCAATTTGGGCACTGCCTTGTTGTGTTACCCTTCATTATTGATCAGCCTCTGAATGCAAGGCTTCTGGTGGAGAAGGGTCTGGCTGCCGAAGTGGAACGCAACGAAGATGGGTCGTTTACTGGGGATGACATATCGAAAACGCTGAGGCTGGCAATGGTGGAAGAGGAAGGAGAGCAGCTGAGAATCAATGCAAGGAAAGCTGCAGTTTTTTTTGGAGATGAGAAGCTGCAGCATGACCACTACCTTGGTGCATTTGTTGATTATCTGAAGAATAATGGCAGGAAAAGGTCTTATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

405

Amino Acids

44.82

Weight (kDa)

5.4

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 210 - 351 6.6e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 4, 47, 832
AccB7I CCANNNNNTGG 1 cut(s) 866
AciI CCGC 2 cut(s) 188, 293
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 1 cut(s) 565
AcuI CTGAAG 1 cut(s) 1202
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 5 cut(s) 150, 209, 462, 500, 760
AfiI CCNNNNNNNGG 1 cut(s) 866
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 4 cut(s) 94, 491, 570, 908
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 2 cut(s) 626, 849
AjuI GAANNNNNNNTTGG 2 cut(s) 733, 765
AleI CACNNNNGTG 1 cut(s) 325
AluBI AGCT 8 cut(s) 23, 467, 667, 695, 709, 1093, 1115, 1141
AluI AGCT 8 cut(s) 23, 467, 667, 695, 709, 1093, 1115, 1141
AlwI GGATC 1 cut(s) 167
AlwNI CAGNNNCTG 1 cut(s) 964
AoxI GGCC 2 cut(s) 54, 811
ApeKI GCWGC 8 cut(s) 176, 245, 425, 998, 1090, 1115, 1141, 1144
ApoI RAATTY 1 cut(s) 565
ArsI GACNNNNNNTTYG 4 cut(s) 56, 88, 563, 595
AspLEI GCGC 1 cut(s) 50
AsuHPI GGTGA 4 cut(s) 261, 291, 304, 514
BaeGI GKGCMC 3 cut(s) 9, 736, 927
BanI GGYRCC 3 cut(s) 4, 47, 832
BanII GRGCYC 1 cut(s) 875
BbsI GAAGAC 2 cut(s) 250, 301
BbvCI CCTCAGC 2 cut(s) 768, 1058
BbvI GCAGC 8 cut(s) 163, 232, 412, 985, 1102, 1102, 1128, 1156
BccI CCATC 5 cut(s) 76, 822, 868, 885, 1016
BceAI ACGGC 1 cut(s) 280
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 2 cut(s) 628, 851
BclI TGATCA 2 cut(s) 142, 955
BfaI CTAG 4 cut(s) 464, 756, 782, 1213
BfmI CTRYAG 2 cut(s) 1116, 1142
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 8 cut(s) 177, 246, 426, 999, 1091, 1116, 1142, 1145
BlpI GCTNAGC 1 cut(s) 668
BlsI GCNGC 8 cut(s) 178, 247, 427, 1000, 1092, 1117, 1143, 1146
BmcAI AGTACT 3 cut(s) 462, 500, 760
Bme1390I CCNGG 2 cut(s) 628, 851
BmgBI CACGTC 1 cut(s) 196
BmiI GGNNCC 4 cut(s) 6, 49, 333, 834
BmrFI CCNGG 2 cut(s) 628, 851
BmrI ACTGGG 3 cut(s) 193, 741, 1044
BmsI GCATC 4 cut(s) 19, 412, 754, 865
BmuI ACTGGG 3 cut(s) 193, 741, 1044
BpiI GAAGAC 2 cut(s) 250, 301
BpmI CTGGAG 1 cut(s) 725
Bpu10I CCTNAGC 2 cut(s) 768, 1058
Bpu1102I GCTNAGC 1 cut(s) 668
BpuEI CTTGAG 1 cut(s) 341
BsaBI GATNNNNATC 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 5 cut(s) 51, 57, 626, 850, 1159
BsaWI WCCGGW 4 cut(s) 271, 301, 322, 524
BsaXI ACNNNNNCTCC 4 cut(s) 646, 668, 676, 698
Bsc4I CCNNNNNNNGG 1 cut(s) 866
Bse1I ACTGG 4 cut(s) 188, 533, 747, 1039
Bse3DI GCAATG 3 cut(s) 135, 487, 1074
Bse8I GATNNNNATC 1 cut(s) 33
BseBI CCWGG 2 cut(s) 628, 851
BseDI CCNNGG 5 cut(s) 51, 57, 626, 850, 1159
BseGI GGATG 6 cut(s) 34, 458, 833, 856, 896, 1045
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 866
BseMI GCAATG 3 cut(s) 135, 487, 1074
BseMII CTCAG 5 cut(s) 659, 751, 759, 1049, 1085
BseNI ACTGG 4 cut(s) 188, 533, 747, 1039
BseSI GKGCMC 3 cut(s) 9, 736, 927
BseXI GCAGC 8 cut(s) 163, 232, 412, 985, 1102, 1102, 1128, 1156
BshFI GGCC 2 cut(s) 56, 813
BshNI GGYRCC 3 cut(s) 4, 47, 832
BsiSI CCGG 4 cut(s) 272, 302, 323, 525
BslI CCNNNNNNNGG 1 cut(s) 866
BsmI GAATGC 1 cut(s) 973
BsnI GGCC 2 cut(s) 56, 813
Bsp1286I GDGCHC 4 cut(s) 9, 736, 875, 927
Bsp143I GATC 5 cut(s) 34, 106, 142, 159, 955
Bsp1720I GCTNAGC 1 cut(s) 668
BspACI CCGC 2 cut(s) 188, 293
BspANI GGCC 2 cut(s) 56, 813
BspCNI CTCAG 5 cut(s) 660, 750, 760, 1050, 1086
BspLI GGNNCC 4 cut(s) 6, 49, 333, 834
BspMAI CTGCAG 2 cut(s) 1120, 1146
BspPI GGATC 1 cut(s) 167
BspT107I GGYRCC 3 cut(s) 4, 47, 832
BsrDI GCAATG 3 cut(s) 135, 487, 1074
BsrI ACTGG 4 cut(s) 188, 533, 747, 1039
BssECI CCNNGG 5 cut(s) 51, 57, 626, 850, 1159
BssMI GATC 5 cut(s) 34, 106, 142, 159, 955
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 1159
Bst2UI CCWGG 2 cut(s) 628, 851
Bst4CI ACNGT 3 cut(s) 61, 212, 400
Bst6I CTCTTC 1 cut(s) 1071
BstACI GRCGYC 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 434
BstC8I GCNNGC 5 cut(s) 21, 384, 388, 513, 1065
BstDEI CTNAG 5 cut(s) 668, 737, 768, 1058, 1094
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 6 cut(s) 34, 458, 833, 856, 896, 1045
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 5 cut(s) 37, 109, 145, 162, 958
BstMBI GATC 5 cut(s) 34, 106, 142, 159, 955
BstMWI GCNNNNNNNGC 6 cut(s) 29, 185, 434, 819, 922, 1112
BstNI CCWGG 2 cut(s) 628, 851
BstNSI RCATGY 2 cut(s) 386, 515
BstSCI CCNGG 2 cut(s) 626, 849
BstSFI CTRYAG 2 cut(s) 1116, 1142
BstSLI GKGCMC 3 cut(s) 9, 736, 927
BstV1I GCAGC 8 cut(s) 163, 232, 412, 985, 1102, 1102, 1128, 1156
BstV2I GAAGAC 2 cut(s) 250, 301
BstXI CCANNNNNNTGG 4 cut(s) 327, 445, 729, 1160
BsuRI GGCC 2 cut(s) 56, 813
BtgI CCRYGG 1 cut(s) 57
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 6 cut(s) 34, 458, 833, 856, 896, 1045
BtsI GCAGTG 1 cut(s) 925
BtsIMutI CAGTG 3 cut(s) 181, 540, 925
Cac8I GCNNGC 5 cut(s) 21, 384, 388, 513, 1065
CaiI CAGNNNCTG 1 cut(s) 964
CfoI GCGC 1 cut(s) 50
Csp6I GTAC 5 cut(s) 149, 208, 461, 499, 759
CviAII CATG 4 cut(s) 383, 512, 698, 1148
CviQI GTAC 5 cut(s) 149, 208, 461, 499, 759
DdeI CTNAG 5 cut(s) 668, 737, 768, 1058, 1094
DinI GGCGCC 1 cut(s) 49
DpnI GATC 5 cut(s) 36, 108, 144, 161, 957
DpnII GATC 5 cut(s) 34, 106, 142, 159, 955
Eam1104I CTCTTC 1 cut(s) 1071
EarI CTCTTC 1 cut(s) 1071
EciI GGCGGA 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 1159
Eco147I AGGCCT 1 cut(s) 813
Eco24I GRGCYC 1 cut(s) 875
Eco32I GATATC 1 cut(s) 417
Eco57I CTGAAG 1 cut(s) 1202
EcoRI GAATTC 1 cut(s) 565
EcoRII CCWGG 2 cut(s) 626, 849
EcoRV GATATC 1 cut(s) 417
EcoT14I CCWWGG 1 cut(s) 1159
EcoT38I GRGCYC 1 cut(s) 875
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 1159
FaeI CATG 4 cut(s) 386, 515, 701, 1151
FaiI YATR 8 cut(s) 68, 384, 396, 513, 687, 699, 1046, 1149
FatI CATG 4 cut(s) 382, 511, 697, 1147
FbaI TGATCA 2 cut(s) 142, 955
Fnu4HI GCNGC 8 cut(s) 177, 246, 426, 999, 1091, 1116, 1142, 1145
FokI GGATG 6 cut(s) 41, 465, 840, 843, 903, 1052
FriOI GRGCYC 1 cut(s) 875
Fsp4HI GCNGC 8 cut(s) 177, 246, 426, 999, 1091, 1116, 1142, 1145
FspBI CTAG 4 cut(s) 464, 756, 782, 1213
GlaI GCGC 1 cut(s) 49
GluI GCNGC 8 cut(s) 177, 246, 426, 999, 1091, 1116, 1142, 1145
GsuI CTGGAG 1 cut(s) 725
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 2 cut(s) 56, 813
HapII CCGG 4 cut(s) 272, 302, 323, 525
HhaI GCGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 4 cut(s) 386, 515, 701, 1151
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 4 cut(s) 403, 538, 578, 1098
HpaII CCGG 4 cut(s) 272, 302, 323, 525
HphI GGTGA 4 cut(s) 261, 291, 304, 514
Hpy166II GTNNAC 4 cut(s) 64, 193, 269, 1032
Hpy188I TCNGA 5 cut(s) 421, 715, 740, 966, 1182
Hpy188III TCNNGA 2 cut(s) 76, 704
Hpy8I GTNNAC 4 cut(s) 64, 193, 269, 1032
HpyAV CCTTC 5 cut(s) 38, 88, 955, 982, 1076
HpyCH4III ACNGT 3 cut(s) 61, 212, 400
HpyCH4IV ACGT 2 cut(s) 195, 255
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 185, 434, 819, 922, 1112
HpyF3I CTNAG 5 cut(s) 668, 737, 768, 1058, 1094
HpySE526I ACGT 2 cut(s) 195, 255
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 4 cut(s) 386, 515, 701, 1151
HspAI GCGC 1 cut(s) 48
KasI GGCGCC 1 cut(s) 47
Ksp22I TGATCA 2 cut(s) 142, 955
Kzo9I GATC 5 cut(s) 34, 106, 142, 159, 955
LmnI GCTCC 3 cut(s) 295, 676, 706
Lsp1109I GCAGC 8 cut(s) 163, 232, 412, 985, 1102, 1102, 1128, 1156
LweI GCATC 4 cut(s) 19, 412, 754, 865
MaeI CTAG 4 cut(s) 464, 756, 782, 1213
MaeII ACGT 2 cut(s) 195, 255
MaeIII GTNAC 3 cut(s) 297, 595, 939
MalI GATC 5 cut(s) 36, 108, 144, 161, 957
MboI GATC 5 cut(s) 34, 106, 142, 159, 955
MboII GAAGA 7 cut(s) 91, 101, 250, 301, 1031, 1088, 1195
MhlI GDGCHC 4 cut(s) 9, 736, 875, 927
MluCI AATT 2 cut(s) 565, 917
Mly113I GGCGCC 1 cut(s) 48
MlyI GAGTC 1 cut(s) 587
MseI TTAA 2 cut(s) 126, 285
MslI CAYNNNNRTG 1 cut(s) 325
MspA1I CMGCKG 1 cut(s) 1093
MspI CCGG 4 cut(s) 272, 302, 323, 525
MspR9I CCNGG 2 cut(s) 628, 851
Mva1269I GAATGC 1 cut(s) 973
MvaI CCWGG 2 cut(s) 628, 851
MwoI GCNNNNNNNGC 6 cut(s) 29, 185, 434, 819, 922, 1112
NarI GGCGCC 1 cut(s) 48
NdeII GATC 5 cut(s) 34, 106, 142, 159, 955
NlaIII CATG 4 cut(s) 386, 515, 701, 1151
NlaIV GGNNCC 4 cut(s) 6, 49, 333, 834
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 2 cut(s) 297, 595
NspI RCATGY 2 cut(s) 386, 515
OliI CACNNNNGTG 1 cut(s) 325
PaeI GCATGC 2 cut(s) 386, 515
PceI AGGCCT 1 cut(s) 813
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 1 cut(s) 973
PfeI GAWTC 3 cut(s) 403, 538, 1098
PflMI CCANNNNNTGG 1 cut(s) 866
PkrI GCNGC 8 cut(s) 178, 247, 427, 1000, 1092, 1117, 1143, 1146
PleI GAGTC 1 cut(s) 586
PluTI GGCGCC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 586
Psp6I CCWGG 2 cut(s) 626, 849
PspGI CCWGG 2 cut(s) 626, 849
PspN4I GGNNCC 4 cut(s) 6, 49, 333, 834
PsrI GAACNNNNNNTAC 2 cut(s) 453, 485
PstI CTGCAG 2 cut(s) 1120, 1146
PstNI CAGNNNCTG 1 cut(s) 964
PvuII CAGCTG 1 cut(s) 1093
RsaI GTAC 5 cut(s) 150, 209, 462, 500, 760
RsaNI GTAC 5 cut(s) 149, 208, 461, 499, 759
RseI CAYNNNNRTG 1 cut(s) 325
SaqAI TTAA 2 cut(s) 126, 285
SatI GCNGC 8 cut(s) 177, 246, 426, 999, 1091, 1116, 1142, 1145
Sau3AI GATC 5 cut(s) 34, 106, 142, 159, 955
ScaI AGTACT 3 cut(s) 462, 500, 760
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 2 cut(s) 628, 851
SduI GDGCHC 4 cut(s) 9, 736, 875, 927
SfaNI GCATC 4 cut(s) 19, 412, 754, 865
SfcI CTRYAG 2 cut(s) 1116, 1142
SfoI GGCGCC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 325
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
SphI GCATGC 2 cut(s) 386, 515
Sse9I AATT 2 cut(s) 565, 917
SseBI AGGCCT 1 cut(s) 813
SsiI CCGC 2 cut(s) 188, 293
SspDI GGCGCC 1 cut(s) 47
SspMI CTAG 4 cut(s) 464, 756, 782, 1213
StuI AGGCCT 1 cut(s) 813
StyD4I CCNGG 2 cut(s) 626, 849
StyI CCWWGG 1 cut(s) 1159
TaaI ACNGT 3 cut(s) 61, 212, 400
TaiI ACGT 2 cut(s) 198, 258
TaqI TCGA 4 cut(s) 42, 75, 843, 1049
TasI AATT 2 cut(s) 565, 917
TatI WGTACW 3 cut(s) 460, 498, 758
TfiI GAWTC 3 cut(s) 403, 538, 1098
Tru1I TTAA 2 cut(s) 126, 285
Tru9I TTAA 2 cut(s) 126, 285
TscAI CASTG 3 cut(s) 188, 540, 932
TseFI GTSAC 2 cut(s) 297, 595
TseI GCWGC 8 cut(s) 176, 245, 425, 998, 1090, 1115, 1141, 1144
Tsp45I GTSAC 2 cut(s) 297, 595
TspDTI ATGAA 2 cut(s) 124, 937
TspGWI ACGGA 2 cut(s) 330, 365
TspRI CASTG 3 cut(s) 188, 540, 932
Van91I CCANNNNNTGG 1 cut(s) 866
XapI RAATTY 1 cut(s) 565
XceI RCATGY 2 cut(s) 386, 515
XspI CTAG 4 cut(s) 464, 756, 782, 1213
ZrmI AGTACT 3 cut(s) 462, 500, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.