Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000733

Physical Location & Seq

Genomic Coordinates Forward (+)

50350998 .. 50351487

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58345

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGAAACGAGCTTCGAGTTGTGATGCTTCCATGGTCTGCCTTTGGCCATTTGATGCCCTTCTTTCAACTCTCCATAGCCTTGGCCAAAGCCAAAGTTCATGTCTCCTACATATCCACCCCAAGAAATATTCAAAGGCTCCCCAAAATCTCACCTGATTTACAACCTTTCATACATTTGGTCCCCATTCCATTTCCTCGTTTCGATCCTGACTTCTTGCAGGAAGGAGCCGAGGCGAGTATCGAGGTACCCTTCGAAAAAACCGAAAACTTACAGATGGCATACGATCTTCTTCAAACACCCATCAAGCATTTCATTGCGGATCAAATGCCGGATTGGATAATTGTCGATTTTGCTGCCCATTGGGTGGTTGAAATTGCCAAAGAGTATGGTGTCCCACTTGCCTACTTCTCTGGTTTCAGTGCTGCAACCAGTGTTTTCTTTGGCCCACCTGAATATCTCACTGGTGCAAACAGAAACTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

162

Amino Acids

18.36

Weight (kDa)

5.43

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05830 FvH4_7g15020 FvH4_7g15600 FvH4_7g15610 FvH4_7g15620 FvH4_7g15650
malus_domestica	MD00G1112100.v1.1 MD01G1068500.v1.1 MD01G1068700.v1.1 MD01G1068800.v1.1 MD03G1019100.v1.1
prunus_persica	Prupe.2G174700_v2.0.a1 Prupe.2G175000_v2.0.a1 Prupe.2G175000_v2.0.a1
pyrus_communis	pycom01g09780 pycom01g09790 pycom01g09820 pycom01g09840 pycom07g13020
rosa_chinensis	RchiOBHm_Chr1g0357061 RchiOBHm_Chr1g0357071 RchiOBHm_Chr1g0358281 RchiOBHm_Chr1g0358291 RchiOBHm_Chr1g0358321 RchiOBHm_Chr1g0358331
rosa_laevigata	RLG00000027973 RLG00000027974 RLG00000027975 RLG00000027976 RLG00000028053 RLG00000028054 RLG00000028055 RLG00000028057 RLG00000028153
rosa_multiflora	Rmu_sc0000166.1_g000044 Rmu_sc0000166.1_g000047 Rmu_sc0002071.1_g000024 Rmu_sc0002071.1_g000025 Rmu_sc0002144.1_g000001 Rmu_sc0013980.1_g000005 Rmu_sc0013980.1_g000013 Rmu_sc0013980.1_g000020 Rmu_sc0013980.1_g000023 Rmu_sc0016079.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298220 Rroxscaffold_4G00298250 Rroxscaffold_4G00299080
rosa_rugosa	Rorug01G0246700 Rorug01G0254000 Rorug01G0254100 Rorug01G0260600 Rorug01G0261000
rosa_samantha	Rh1AG267700 Rh1AG267800 Rh1AG268200 Rh1AG274700 Rh1BG235600 Rh1BG235700 Rh1BG235900 Rh1BG241500 Rh1CG243100 Rh1CG251700 Rh1CG251900 Rh1CG257800 Rh1DG263000 Rh1DG263100 Rh1DG263200 Rh1DG270300
rosa_wichuraiana	Rw1G023630 Rw1G023640 Rw1G023670 Rw1G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	247
AccB7I	CCANNNNNTGG	1 cut(s)	367
AciI	CCGC	1 cut(s)	320
AclWI	GGATC	2 cut(s)	200, 330
AcoI	YGGCCR	2 cut(s)	46, 84
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	4 cut(s)	68, 134, 296, 374
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	200, 330
AoxI	GGCC	3 cut(s)	46, 84, 445
ApeKI	GCWGC	2 cut(s)	356, 425
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
Asp718I	GGTACC	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	181, 446
AsuHPI	GGTGA	1 cut(s)	144
AsuII	TTCGAA	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	181
BalI	TGGCCA	2 cut(s)	48, 86
BanI	GGYRCC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	343, 412
BccI	CCATC	2 cut(s)	271, 311
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BcoDI	GTCTC	1 cut(s)	109
BisI	GCNGC	2 cut(s)	357, 426
BlsI	GCNGC	2 cut(s)	358, 427
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	181, 446
BmiI	GGNNCC	4 cut(s)	140, 183, 229, 249
BmsI	GCATC	2 cut(s)	15, 45
Bpu14I	TTCGAA	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	32, 81, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	2 cut(s)	432, 469
Bse3DI	GCAATG	1 cut(s)	315
BseDI	CCNNGG	3 cut(s)	32, 81, 231
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	315
BseNI	ACTGG	2 cut(s)	432, 469
BseXI	GCAGC	2 cut(s)	343, 412
BshFI	GGCC	3 cut(s)	48, 86, 447
BshNI	GGYRCC	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	332
BslFI	GGGAC	2 cut(s)	167, 380
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	2 cut(s)	167, 380
BsnI	GGCC	3 cut(s)	48, 86, 447
Bsp119I	TTCGAA	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	205, 286, 322
Bsp19I	CCATGG	1 cut(s)	32
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	3 cut(s)	48, 86, 447
BspLI	GGNNCC	4 cut(s)	140, 183, 229, 249
BspPI	GGATC	2 cut(s)	200, 330
BspT104I	TTCGAA	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	2 cut(s)	432, 469
BssECI	CCNNGG	3 cut(s)	32, 81, 231
BssMI	GATC	3 cut(s)	205, 286, 322
BssT1I	CCWWGG	2 cut(s)	32, 81
BstBI	TTCGAA	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	32
BstKTI	GATC	3 cut(s)	208, 289, 325
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	3 cut(s)	205, 286, 322
BstV1I	GCAGC	2 cut(s)	343, 412
BstXI	CCANNNNNNTGG	1 cut(s)	82
BsuRI	GGCC	3 cut(s)	48, 86, 447
BtgI	CCRYGG	1 cut(s)	32
BtsIMutI	CAGTG	3 cut(s)	427, 439, 462
Cfr13I	GGNCC	2 cut(s)	181, 446
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	2 cut(s)	33, 101
CviJI	RGCY	8 cut(s)	13, 48, 80, 86, 92, 139, 230, 447
CviKI_1	RGCY	8 cut(s)	13, 48, 80, 86, 92, 139, 230, 447
CviQI	GTAC	1 cut(s)	248
DpnI	GATC	3 cut(s)	207, 288, 324
DpnII	GATC	3 cut(s)	205, 286, 322
EaeI	YGGCCR	2 cut(s)	46, 84
Eco130I	CCWWGG	2 cut(s)	32, 81
Eco47I	GGWCC	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	32, 81
ErhI	CCWWGG	2 cut(s)	32, 81
FaeI	CATG	2 cut(s)	36, 104
FaiI	YATR	8 cut(s)	34, 77, 102, 113, 173, 283, 390, 483
FaqI	GGGAC	2 cut(s)	167, 380
FatI	CATG	2 cut(s)	32, 100
Fnu4HI	GCNGC	2 cut(s)	357, 426
Fsp4HI	GCNGC	2 cut(s)	357, 426
GluI	GCNGC	2 cut(s)	357, 426
HaeIII	GGCC	3 cut(s)	48, 86, 447
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	2 cut(s)	36, 104
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	144
Hpy188III	TCNNGA	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	70, 218, 262
HpyCH4V	TGCA	3 cut(s)	220, 428, 470
Hsp92II	CATG	2 cut(s)	36, 104
KpnI	GGTACC	1 cut(s)	251
Kzo9I	GATC	3 cut(s)	205, 286, 322
LmnI	GCTCC	2 cut(s)	144, 227
LpnPI	CCDG	8 cut(s)	168, 206, 222, 345, 399, 445, 450, 465
Lsp1109I	GCAGC	2 cut(s)	343, 412
LweI	GCATC	2 cut(s)	15, 45
MalI	GATC	3 cut(s)	207, 288, 324
MboI	GATC	3 cut(s)	205, 286, 322
MboII	GAAGA	2 cut(s)	281, 284
MlsI	TGGCCA	2 cut(s)	48, 86
MluCI	AATT	2 cut(s)	342, 375
MluNI	TGGCCA	2 cut(s)	48, 86
MnlI	CCTC	3 cut(s)	207, 226, 238
Mox20I	TGGCCA	2 cut(s)	48, 86
MscI	TGGCCA	2 cut(s)	48, 86
Msp20I	TGGCCA	2 cut(s)	48, 86
MspI	CCGG	1 cut(s)	332
NcoI	CCATGG	1 cut(s)	32
NdeII	GATC	3 cut(s)	205, 286, 322
NlaIII	CATG	2 cut(s)	36, 104
NlaIV	GGNNCC	4 cut(s)	140, 183, 229, 249
NmeAIII	GCCGAG	1 cut(s)	256
NspV	TTCGAA	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	358, 427
PspN4I	GGNNCC	4 cut(s)	140, 183, 229, 249
PspPI	GGNCC	2 cut(s)	181, 446
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
SatI	GCNGC	2 cut(s)	357, 426
Sau3AI	GATC	3 cut(s)	205, 286, 322
Sau96I	GGNCC	2 cut(s)	181, 446
SetI	ASST	5 cut(s)	15, 157, 169, 249, 454
SfaNI	GCATC	2 cut(s)	15, 45
SfuI	TTCGAA	1 cut(s)	255
SinI	GGWCC	1 cut(s)	181
Sse9I	AATT	2 cut(s)	342, 375
SsiI	CCGC	1 cut(s)	320
SspI	AATATT	1 cut(s)	130
StyI	CCWWGG	2 cut(s)	32, 81
TaqI	TCGA	5 cut(s)	16, 204, 243, 255, 348
TasI	AATT	2 cut(s)	342, 375
TscAI	CASTG	3 cut(s)	427, 439, 469
TseI	GCWGC	2 cut(s)	356, 425
TspDTI	ATGAA	3 cut(s)	89, 160, 304
TspRI	CASTG	3 cut(s)	427, 439, 469
Van91I	CCANNNNNTGG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.