RchiOBHm_Chr1g0357061

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000733
Physical Location & Seq
Forward (+)
49446798 .. 49448390
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58237

Sequence Viewer

Length: 1398 bp
ATGGCAAAAGAGCTTCATGTTGTGATTCTTCCATGGTCTGCCTTTGGCCATATCATCCCTTTGATTCAACTCTCCATAGCCTTAGCAAAAGCCCAGATTCATGTCTCCTTCATATCAACCCCAAAAAACATCCAAAGGCTCCCTAAAATCCCACCTGAGTTGCAATCTCTCATAACAATAGTGCCTTTTCCTTTGCCAACTTTGGATGCTGCAGATCGGCTGTTGCCTGAAGGCGCCGAGGCCACGGTGGACATACCTTTCGAGAAAATGGACGACTTGAAGTTTGCATTTGATCTTCTACGACAACCCTTTAAGCAGTTCATTGCTGATCAAGTGCCGGATTGGATCATCACCGATTTTGCCGCTCACTGGGCGGTTGACGTTGCCAGAGAGTATGGTGTTCCTGTTGCCTACTTCTCTCCTTTCTCTGCTGCTACGCATGTGTTCTGTGGTTCACTGGAATATCGCTCTCATGTTCCACCATCACCGGAAGTATTCACCTCCCCACCGGAGTGGGTTCCTTTTCCGTCTTTGTTAGCACTCAAGGAGTTTGAGGCAGTTCATTTTCTTGCTGGCTTTTTTAATGTGAATCGTTCAGGGATAAGTGATGCTGAAAGGGTTGCCAAGATTGTATTAGCGAGTCAAGTACTAGCCTTTCGTAGTTGCAATGAAATTGAAGGAGAGTACTTGGATTTGTACGCGAAACTCACCGGAAAACCTGTGATTCCCACCGGTTTGCTACCTCCAAAGGAATCAAAAAGGGAGTCGGGGAACGATGTGATTTTTGAGTGGCTTGATAAGCAGAAACCCAGGTCAGTTGTGTTTGTAGGGTTTGGGAGTGAGTGTAAGGTGAGCAAAGAACAAGTGTATGAGATAGCTCATTCAGAGTTGCCATTTCTCTGGGCACTCAGAAAACCCAGTTGGGCTAGTACTGATGCTGAGGCTCTACCTCTAGGTTTTGTGGACAGAACATCAAAGAAAGGCCTTGTTTGCATGGGATGGGTGCCACAAATCGAAATTCTGGGGCACCCATCAGTCGGGGGTTCTCTGTTTCACTCTGGATGGGGTTCTGTGATTGAAACTCTGCAATTTGGGCATTGCTTTGTTGTGTTACCCTTAATTGTTGATCAGCCTCTGAATGCAAGGCTTCTGGTGGAGAAAGGTCTGGCTGCCGAAGTGAAACGCAACAATGATGGGTCGTTTACTGCAGACGACATAGCCAAAACACTGAGGCTAGCAATGGTGGAAGAGGAAGGAGAGCACCTGAGAATCAATGCAAGGAAAGCTGCAGCTGTTTTTGGAGATGAGAAGCTGCACCAAGACCACTATCTTGGTGCATTTGTTGATTATCTCAAGAATAATGGTAGAAAAGGTCTTCTAGACAAGAATGATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

465

Amino Acids

51.71

Weight (kDa)

5.81

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 271 - 412 2.8e-13 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 233, 1003, 1026
AccBSI CCGCTC 1 cut(s) 365
AccII CGCG 1 cut(s) 701
AciI CCGC 2 cut(s) 363, 374
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 1017
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 4 cut(s) 648, 686, 698, 931
AfiI CCNNNNNNNGG 2 cut(s) 369, 1037
AgeI ACCGGT 1 cut(s) 731
AgsI TTSAA 4 cut(s) 68, 280, 677, 1079
AjnI CCWGG 1 cut(s) 809
AjuI GAANNNNNNNTTGG 2 cut(s) 904, 936
AleI CACNNNNGTG 1 cut(s) 511
AluBI AGCT 5 cut(s) 13, 878, 1286, 1292, 1312
AluI AGCT 5 cut(s) 13, 878, 1286, 1292, 1312
Alw21I GWGCWC 1 cut(s) 1263
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 353
AlwNI CAGNNNCTG 1 cut(s) 1135
AoxI GGCC 3 cut(s) 46, 240, 982
ApeKI GCWGC 6 cut(s) 209, 431, 1169, 1286, 1289, 1312
ApoI RAATTY 1 cut(s) 1017
ArsI GACNNNNNNTTYG 6 cut(s) 242, 266, 274, 298, 749, 781
AsiGI ACCGGT 1 cut(s) 731
AspLEI GCGC 1 cut(s) 236
AsuHPI GGTGA 5 cut(s) 343, 477, 490, 700, 862
AsuNHI GCTAGC 1 cut(s) 1234
BaeGI GKGCMC 2 cut(s) 907, 1029
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 3 cut(s) 233, 1003, 1026
BbsI GAAGAC 1 cut(s) 1367
Bbv12I GWGCWC 1 cut(s) 1263
BbvCI CCTCAGC 1 cut(s) 939
BbvI GCAGC 6 cut(s) 196, 418, 1156, 1273, 1299, 1301
BccI CCATC 5 cut(s) 490, 993, 1039, 1056, 1187
BciT130I CCWGG 1 cut(s) 811
BclI TGATCA 2 cut(s) 328, 1126
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 5 cut(s) 650, 927, 953, 1235, 1379
BfmI CTRYAG 3 cut(s) 210, 1206, 1287
BfoI RGCGCY 1 cut(s) 237
BisI GCNGC 7 cut(s) 210, 363, 432, 1170, 1287, 1290, 1313
BlsI GCNGC 7 cut(s) 211, 364, 433, 1171, 1288, 1291, 1314
BmcAI AGTACT 3 cut(s) 648, 686, 931
Bme1390I CCNGG 1 cut(s) 811
BmiI GGNNCC 5 cut(s) 140, 235, 519, 1005, 1028
BmrFI CCNGG 1 cut(s) 811
BmrI ACTGGG 2 cut(s) 379, 912
BmsI GCATC 3 cut(s) 196, 598, 925
BmtI GCTAGC 1 cut(s) 1238
BmuI ACTGGG 2 cut(s) 379, 912
BpiI GAAGAC 1 cut(s) 1367
Bpu10I CCTNAGC 2 cut(s) 82, 939
BpuEI CTTGAG 2 cut(s) 527, 1337
Bsa29I ATCGAT 1 cut(s) 1393
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 4 cut(s) 32, 237, 243, 809
BsaWI WCCGGW 4 cut(s) 487, 508, 710, 731
BsaXI ACNNNNNCTCC 2 cut(s) 829, 859
Bsc4I CCNNNNNNNGG 2 cut(s) 369, 1037
Bse118I RCCGGY 1 cut(s) 731
Bse1I ACTGG 3 cut(s) 374, 462, 918
Bse3DI GCAATG 4 cut(s) 321, 673, 1096, 1245
BseBI CCWGG 1 cut(s) 811
BseCI ATCGAT 1 cut(s) 1393
BseDI CCNNGG 4 cut(s) 32, 237, 243, 809
BseGI GGATG 5 cut(s) 54, 129, 211, 1004, 1067
BseLI CCNNNNNNNGG 2 cut(s) 369, 1037
BseMI GCAATG 4 cut(s) 321, 673, 1096, 1245
BseMII CTCAG 5 cut(s) 147, 922, 930, 1220, 1256
BseNI ACTGG 3 cut(s) 374, 462, 918
BseSI GKGCMC 2 cut(s) 907, 1029
BseXI GCAGC 6 cut(s) 196, 418, 1156, 1273, 1299, 1301
BsgI GTGCAG 1 cut(s) 1298
Bsh1236I CGCG 1 cut(s) 701
BshFI GGCC 3 cut(s) 48, 242, 984
BshNI GGYRCC 3 cut(s) 233, 1003, 1026
BshTI ACCGGT 1 cut(s) 731
BshVI ATCGAT 1 cut(s) 1393
BsiHKAI GWGCWC 1 cut(s) 1263
BsiSI CCGG 5 cut(s) 338, 488, 509, 711, 732
BslI CCNNNNNNNGG 2 cut(s) 369, 1037
BsmAI GTCTC 1 cut(s) 109
BsmI GAATGC 1 cut(s) 1144
BsnI GGCC 3 cut(s) 48, 242, 984
Bsp1286I GDGCHC 3 cut(s) 907, 1029, 1263
Bsp143I GATC 6 cut(s) 214, 292, 328, 345, 1126, 1390
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 2 cut(s) 363, 374
BspANI GGCC 3 cut(s) 48, 242, 984
BspCNI CTCAG 5 cut(s) 148, 921, 931, 1221, 1257
BspDI ATCGAT 1 cut(s) 1393
BspFNI CGCG 1 cut(s) 701
BspLI GGNNCC 5 cut(s) 140, 235, 519, 1005, 1028
BspMAI CTGCAG 3 cut(s) 214, 1210, 1291
BspOI GCTAGC 1 cut(s) 1238
BspPI GGATC 1 cut(s) 353
BspT107I GGYRCC 3 cut(s) 233, 1003, 1026
BsrBI CCGCTC 1 cut(s) 365
BsrDI GCAATG 4 cut(s) 321, 673, 1096, 1245
BsrFI RCCGGY 1 cut(s) 731
BsrI ACTGG 3 cut(s) 374, 462, 918
BssAI RCCGGY 1 cut(s) 731
BssECI CCNNGG 4 cut(s) 32, 237, 243, 809
BssMI GATC 6 cut(s) 214, 292, 328, 345, 1126, 1390
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 811
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 1 cut(s) 1242
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 574, 1236
BstDEI CTNAG 6 cut(s) 82, 156, 908, 939, 1229, 1265
BstDSI CCRYGG 2 cut(s) 32, 243
BstF5I GGATG 5 cut(s) 54, 129, 211, 1004, 1067
BstFNI CGCG 1 cut(s) 701
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 6 cut(s) 217, 295, 331, 348, 1129, 1393
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 6 cut(s) 214, 292, 328, 345, 1126, 1390
BstMWI GCNNNNNNNGC 5 cut(s) 371, 799, 990, 1093, 1283
BstNI CCWGG 1 cut(s) 811
BstNSI RCATGY 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 809
BstSFI CTRYAG 3 cut(s) 210, 1206, 1287
BstSLI GKGCMC 2 cut(s) 907, 1029
BstUI CGCG 1 cut(s) 701
BstV1I GCAGC 6 cut(s) 196, 418, 1156, 1273, 1299, 1301
BstV2I GAAGAC 1 cut(s) 1367
BstXI CCANNNNNNTGG 3 cut(s) 513, 900, 1331
Bsu15I ATCGAT 1 cut(s) 1393
BsuRI GGCC 3 cut(s) 48, 242, 984
BsuTUI ATCGAT 1 cut(s) 1393
BtgI CCRYGG 2 cut(s) 32, 243
BtsCI GGATG 5 cut(s) 54, 129, 211, 1004, 1067
BtsIMutI CAGTG 3 cut(s) 367, 455, 1226
Cac8I GCNNGC 2 cut(s) 574, 1236
CaiI CAGNNNCTG 1 cut(s) 1135
CfoI GCGC 1 cut(s) 236
Cfr10I RCCGGY 1 cut(s) 731
ClaI ATCGAT 1 cut(s) 1393
Csp6I GTAC 4 cut(s) 647, 685, 697, 930
CspAI ACCGGT 1 cut(s) 731
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 6 cut(s) 17, 33, 101, 440, 473, 994
CviQI GTAC 4 cut(s) 647, 685, 697, 930
DdeI CTNAG 6 cut(s) 82, 156, 908, 939, 1229, 1265
DinI GGCGCC 1 cut(s) 235
DpnI GATC 6 cut(s) 216, 294, 330, 347, 1128, 1392
DpnII GATC 6 cut(s) 214, 292, 328, 345, 1126, 1390
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 1242
EarI CTCTTC 1 cut(s) 1242
Eco130I CCWWGG 1 cut(s) 32
Eco147I AGGCCT 1 cut(s) 984
Eco57I CTGAAG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 809
EcoT14I CCWWGG 1 cut(s) 32
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 6 cut(s) 20, 36, 104, 443, 476, 997
FatI CATG 6 cut(s) 16, 32, 100, 439, 472, 993
FbaI TGATCA 2 cut(s) 328, 1126
Fnu4HI GCNGC 7 cut(s) 210, 363, 432, 1170, 1287, 1290, 1313
FokI GGATG 5 cut(s) 41, 116, 218, 1011, 1074
Fsp4HI GCNGC 7 cut(s) 210, 363, 432, 1170, 1287, 1290, 1313
FspBI CTAG 5 cut(s) 650, 927, 953, 1235, 1379
GlaI GCGC 1 cut(s) 235
GluI GCNGC 7 cut(s) 210, 363, 432, 1170, 1287, 1290, 1313
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 3 cut(s) 48, 242, 984
HapII CCGG 5 cut(s) 338, 488, 509, 711, 732
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 6 cut(s) 20, 36, 104, 443, 476, 997
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 9 cut(s) 25, 64, 97, 589, 640, 724, 752, 764, 1269
HpaII CCGG 5 cut(s) 338, 488, 509, 711, 732
HphI GGTGA 5 cut(s) 343, 477, 490, 700, 862
Hpy166II GTNNAC 5 cut(s) 250, 379, 455, 964, 1203
Hpy188I TCNGA 3 cut(s) 886, 911, 1137
Hpy188III TCNNGA 4 cut(s) 262, 1059, 1354, 1379
Hpy8I GTNNAC 5 cut(s) 250, 379, 455, 964, 1203
HpyAV CCTTC 4 cut(s) 118, 224, 671, 1247
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 381
HpyF10VI GCNNNNNNNGC 5 cut(s) 371, 799, 990, 1093, 1283
HpyF3I CTNAG 6 cut(s) 82, 156, 908, 939, 1229, 1265
HpySE526I ACGT 1 cut(s) 381
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 6 cut(s) 20, 36, 104, 443, 476, 997
HspAI GCGC 1 cut(s) 234
KasI GGCGCC 1 cut(s) 233
Ksp22I TGATCA 2 cut(s) 328, 1126
Kzo9I GATC 6 cut(s) 214, 292, 328, 345, 1126, 1390
LmnI GCTCC 1 cut(s) 144
Lsp1109I GCAGC 6 cut(s) 196, 418, 1156, 1273, 1299, 1301
LweI GCATC 3 cut(s) 196, 598, 925
MaeI CTAG 5 cut(s) 650, 927, 953, 1235, 1379
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 1 cut(s) 1110
MalI GATC 6 cut(s) 216, 294, 330, 347, 1128, 1392
MbiI CCGCTC 1 cut(s) 365
MboI GATC 6 cut(s) 214, 292, 328, 345, 1126, 1390
MboII GAAGA 4 cut(s) 20, 287, 1259, 1367
MhlI GDGCHC 3 cut(s) 907, 1029, 1263
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 4 cut(s) 672, 1017, 1088, 1119
MluNI TGGCCA 1 cut(s) 48
Mly113I GGCGCC 1 cut(s) 234
MlyI GAGTC 2 cut(s) 649, 773
MnlI CCTC 9 cut(s) 232, 511, 547, 753, 934, 960, 1143, 1224, 1243
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MseI TTAA 3 cut(s) 312, 582, 1118
MslI CAYNNNNRTG 1 cut(s) 511
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 1292
MspI CCGG 5 cut(s) 338, 488, 509, 711, 732
MspR9I CCNGG 1 cut(s) 811
Mva1269I GAATGC 1 cut(s) 1144
MvaI CCWGG 1 cut(s) 811
MvnI CGCG 1 cut(s) 701
MwoI GCNNNNNNNGC 5 cut(s) 371, 799, 990, 1093, 1283
NarI GGCGCC 1 cut(s) 234
NcoI CCATGG 1 cut(s) 32
NdeII GATC 6 cut(s) 214, 292, 328, 345, 1126, 1390
NheI GCTAGC 1 cut(s) 1234
NlaIII CATG 6 cut(s) 20, 36, 104, 443, 476, 997
NlaIV GGNNCC 5 cut(s) 140, 235, 519, 1005, 1028
NmeAIII GCCGAG 1 cut(s) 262
NspI RCATGY 1 cut(s) 443
OliI CACNNNNGTG 1 cut(s) 511
PceI AGGCCT 1 cut(s) 984
PctI GAATGC 1 cut(s) 1144
PfeI GAWTC 7 cut(s) 25, 64, 97, 589, 724, 752, 1269
PinAI ACCGGT 1 cut(s) 731
PkrI GCNGC 7 cut(s) 211, 364, 433, 1171, 1288, 1291, 1314
PleI GAGTC 2 cut(s) 648, 772
PluTI GGCGCC 1 cut(s) 237
PpsI GAGTC 2 cut(s) 648, 772
Psp6I CCWGG 1 cut(s) 809
PspGI CCWGG 1 cut(s) 809
PspN4I GGNNCC 5 cut(s) 140, 235, 519, 1005, 1028
PstI CTGCAG 3 cut(s) 214, 1210, 1291
PstNI CAGNNNCTG 1 cut(s) 1135
PvuII CAGCTG 1 cut(s) 1292
RsaI GTAC 4 cut(s) 648, 686, 698, 931
RsaNI GTAC 4 cut(s) 647, 685, 697, 930
RseI CAYNNNNRTG 1 cut(s) 511
SaqAI TTAA 3 cut(s) 312, 582, 1118
SatI GCNGC 7 cut(s) 210, 363, 432, 1170, 1287, 1290, 1313
Sau3AI GATC 6 cut(s) 214, 292, 328, 345, 1126, 1390
ScaI AGTACT 3 cut(s) 648, 686, 931
SchI GAGTC 2 cut(s) 649, 773
ScrFI CCNGG 1 cut(s) 811
SduI GDGCHC 3 cut(s) 907, 1029, 1263
SfaNI GCATC 3 cut(s) 196, 598, 925
SfcI CTRYAG 3 cut(s) 210, 1206, 1287
SfoI GGCGCC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 511
SmlI CTYRAG 2 cut(s) 542, 1352
SmoI CTYRAG 2 cut(s) 542, 1352
Sse9I AATT 4 cut(s) 672, 1017, 1088, 1119
SseBI AGGCCT 1 cut(s) 984
SsiI CCGC 2 cut(s) 363, 374
SspDI GGCGCC 1 cut(s) 233
SspMI CTAG 5 cut(s) 650, 927, 953, 1235, 1379
StuI AGGCCT 1 cut(s) 984
StyD4I CCNGG 1 cut(s) 809
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 1 cut(s) 384
TaqI TCGA 3 cut(s) 261, 1014, 1393
TasI AATT 4 cut(s) 672, 1017, 1088, 1119
TatI WGTACW 3 cut(s) 646, 684, 929
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 7 cut(s) 25, 64, 97, 589, 724, 752, 1269
Tru1I TTAA 3 cut(s) 312, 582, 1118
Tru9I TTAA 3 cut(s) 312, 582, 1118
TscAI CASTG 3 cut(s) 374, 462, 1233
TseI GCWGC 6 cut(s) 209, 431, 1169, 1286, 1289, 1312
TspDTI ATGAA 6 cut(s) 5, 89, 100, 310, 551, 684
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 3 cut(s) 374, 462, 1233
XapI RAATTY 1 cut(s) 1017
XbaI TCTAGA 1 cut(s) 1378
XceI RCATGY 1 cut(s) 443
XspI CTAG 5 cut(s) 650, 927, 953, 1235, 1379
ZrmI AGTACT 3 cut(s) 648, 686, 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.