Rw1G024510

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000733
Physical Location & Seq
Forward (+)
50686965 .. 50688379
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024510.1

Sequence Viewer

Length: 1374 bp
ATGGGAAACGAGCTTCGAGTTGTGATGCTTCCATGGTCTGCCTTTGGCCATTTGATGCCCTTCTTTCAACTCTCCATAGCCTTGGCCAAAGCCAAAGTTCATGTCTCCTTCATATCAACCCCAAGAAACATTCACAGGCTCCCCAAAATCTCACCTGATTTACAACCTTTCATACACTTGGTCCCCATTCCATTTCCTCGTTTGGATCCTGACTTCTTGCCGGAAGGAGCCGAGGCCAGTATCGAGGTACCCTTCGAAAAAACCGAAAACTTATATATGGCATACGATCTTCTTCAAACACCCATCAAGCATTTCATTGCAGATCAAATGCCGGATTGGATAATTGCCGATTTTGCTGCTCATTGGGTGGTCGAAATTGCCGAAGAGTATGGTATTCCACTTGCCTACTTCTCAGTTTTCAGTGCTGCAACCAGTAAATTATGCTCTCCCATCACCACAAGCTTGACATCTCCACGAGAATGGGTCACTTTTCCTTCTTTGGTGGCATTGAAGCAGCATGAAGCCATTTATGTGCCTCAAGGGTCTTTCGCAGCAAATAGTACAGGGATAAGTCTTACGTCAAGGTTTGCCGAGATCATATCAGCAAGTCAAGTTTTGGCTATTCGTACTTGCAGTGAGATTGAAGGAGACTACTTGGAAGTGTACAAGAAAATTAATGGAAAGCCAGTGATTCCCATTGGTGTGCTTCCTCCAGATCAACCTGGGAAAAGAGCAAAAGGGGAAATAAACTCCGATGGGGCTATGTTTGATTGGCTTGATAAGCAAAAACCCAGGTCAATTGTGTTTGTGGGGTTTGGGAGTGAGTGTAAGCTGAGCAAAGAACAAGTTCATGAGATAGCTCAGGGGTTGGAGCTTTCAGAATTGCCTTTTATTTGGGGACTCAGAAAACCCATTTCAGCTAACAGTGATGAAGTAGATGATTTTCTGCCTTCAGGTTTTGTTGACAGAACATCAGAGAAAGGGCTTGTTTGCTTTGGATGGGTGCCCCAAATGGAAATTTTGGCGCACCCATCAATTGGGGGCTCTTTGTTTCATTCTGGATGGGGTTCTGTGATTGAGTCTCTGCAATTTGGGCATTGCCTTGTTGTGTTACCCTTCATGTACGATCAGCCTTTGAATGCAAGGCTTTTGGTGGAGAAGGGTCTGGCTGCCGAAGTGAAGTGCAACGAAGACGGGTCGCTTAGTAGAGAGGAAATAGCAAAAACGCTGAGGCTAGCAATGGTGGAAGAGGAAGGAGAGCACTTGAGAAGCAATGCGAGGAAAGCTGCTGCAGTTTTTGGAGATCATAAGCTGCACCAAGACCACTACATCGGTGCATTTGTTGATTATCTTAAAAATAATGTTGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

457

Amino Acids

50.75

Weight (kDa)

5.48

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 264 - 411 1.3e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 247
AccB1I GGYRCC 2 cut(s) 247, 1003
AccB7I CCANNNNNTGG 1 cut(s) 1037
AclWI GGATC 2 cut(s) 200, 213
AcoI YGGCCR 2 cut(s) 46, 84
AcsI RAATTY 1 cut(s) 1017
AcuI CTGAAG 1 cut(s) 936
AfaI GTAC 5 cut(s) 249, 562, 628, 665, 1124
AfiI CCNNNNNNNGG 1 cut(s) 1037
AgsI TTSAA 5 cut(s) 68, 296, 511, 644, 1138
AjnI CCWGG 2 cut(s) 721, 791
AluBI AGCT 8 cut(s) 13, 462, 832, 860, 874, 920, 1286, 1312
AluI AGCT 8 cut(s) 13, 462, 832, 860, 874, 920, 1286, 1312
Alw21I GWGCWC 1 cut(s) 1263
Alw26I GTCTC 3 cut(s) 109, 642, 1086
AlwI GGATC 2 cut(s) 200, 213
AoxI GGCC 3 cut(s) 46, 84, 234
ApeKI GCWGC 8 cut(s) 356, 425, 514, 551, 1169, 1286, 1289, 1312
ApoI RAATTY 1 cut(s) 1017
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
AseI ATTAAT 1 cut(s) 675
Asp700I GAANNNNTTC 1 cut(s) 846
Asp718I GGTACC 1 cut(s) 247
AspLEI GCGC 1 cut(s) 1027
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 2 cut(s) 144, 445
AsuII TTCGAA 1 cut(s) 255
AsuNHI GCTAGC 1 cut(s) 1234
AvaII GGWCC 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 1008
BalI TGGCCA 2 cut(s) 48, 86
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 2 cut(s) 247, 1003
BanII GRGCYC 1 cut(s) 1046
BauI CACGAG 1 cut(s) 474
BbsI GAAGAC 1 cut(s) 1197
Bbv12I GWGCWC 1 cut(s) 1263
BbvCI CCTCAGC 1 cut(s) 1229
BbvI GCAGC 8 cut(s) 343, 412, 526, 563, 1156, 1273, 1276, 1299
BccI CCATC 6 cut(s) 311, 458, 749, 993, 1039, 1056
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 2 cut(s) 723, 793
BcoDI GTCTC 3 cut(s) 109, 642, 1086
BfaI CTAG 1 cut(s) 1235
BfmI CTRYAG 1 cut(s) 1290
BisI GCNGC 8 cut(s) 357, 426, 515, 552, 1170, 1287, 1290, 1313
BlpI GCTNAGC 1 cut(s) 833
BlsI GCNGC 8 cut(s) 358, 427, 516, 553, 1171, 1288, 1291, 1314
Bme1390I CCNGG 2 cut(s) 723, 793
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 6 cut(s) 140, 183, 207, 229, 249, 1005
BmrFI CCNGG 2 cut(s) 723, 793
BmsI GCATC 2 cut(s) 15, 45
BmtI GCTAGC 1 cut(s) 1238
BpiI GAAGAC 1 cut(s) 1197
BpmI CTGGAG 1 cut(s) 696
Bpu10I CCTNAGC 2 cut(s) 861, 1229
Bpu1102I GCTNAGC 1 cut(s) 833
Bpu14I TTCGAA 1 cut(s) 255
BpuEI CTTGAG 2 cut(s) 522, 1285
BsaJI CCNNGG 5 cut(s) 32, 81, 231, 722, 791
BsaXI ACNNNNNCTCC 2 cut(s) 811, 841
Bsc4I CCNNNNNNNGG 1 cut(s) 1037
Bse1I ACTGG 3 cut(s) 237, 432, 686
Bse3DI GCAATG 4 cut(s) 315, 1096, 1245, 1279
BseBI CCWGG 2 cut(s) 723, 793
BseDI CCNNGG 5 cut(s) 32, 81, 231, 722, 791
BseGI GGATG 2 cut(s) 1004, 1067
BseLI CCNNNNNNNGG 1 cut(s) 1037
BseMI GCAATG 4 cut(s) 315, 1096, 1245, 1279
BseMII CTCAG 5 cut(s) 426, 824, 875, 916, 1220
BseNI ACTGG 3 cut(s) 237, 432, 686
BseSI GKGCMC 1 cut(s) 1008
BseXI GCAGC 8 cut(s) 343, 412, 526, 563, 1156, 1273, 1276, 1299
BsgI GTGCAG 1 cut(s) 1298
BshFI GGCC 3 cut(s) 48, 86, 236
BshNI GGYRCC 2 cut(s) 247, 1003
BsiHKAI GWGCWC 1 cut(s) 1263
BsiSI CCGG 2 cut(s) 221, 332
BslFI GGGAC 2 cut(s) 167, 912
BslI CCNNNNNNNGG 1 cut(s) 1037
BsmAI GTCTC 3 cut(s) 109, 642, 1086
BsmFI GGGAC 2 cut(s) 167, 912
BsmI GAATGC 1 cut(s) 1144
BsnI GGCC 3 cut(s) 48, 86, 236
Bsp119I TTCGAA 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 1008, 1046, 1263
Bsp1407I TGTACA 1 cut(s) 663
Bsp143I GATC 7 cut(s) 205, 286, 322, 594, 715, 1126, 1303
Bsp1720I GCTNAGC 1 cut(s) 833
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 3 cut(s) 48, 86, 236
BspCNI CTCAG 5 cut(s) 425, 825, 874, 915, 1221
BspHI TCATGA 1 cut(s) 850
BspLI GGNNCC 6 cut(s) 140, 183, 207, 229, 249, 1005
BspMAI CTGCAG 1 cut(s) 1294
BspOI GCTAGC 1 cut(s) 1238
BspPI GGATC 2 cut(s) 200, 213
BspT104I TTCGAA 1 cut(s) 255
BspT107I GGYRCC 2 cut(s) 247, 1003
BsrDI GCAATG 4 cut(s) 315, 1096, 1245, 1279
BsrGI TGTACA 1 cut(s) 663
BsrI ACTGG 3 cut(s) 237, 432, 686
BssECI CCNNGG 5 cut(s) 32, 81, 231, 722, 791
BssMI GATC 7 cut(s) 205, 286, 322, 594, 715, 1126, 1303
BssSI CACGAG 1 cut(s) 474
BssT1I CCWWGG 2 cut(s) 32, 81
Bst2BI CACGAG 1 cut(s) 474
Bst2UI CCWGG 2 cut(s) 723, 793
Bst4CI ACNGT 1 cut(s) 926
Bst6I CTCTTC 2 cut(s) 378, 1242
BstAUI TGTACA 1 cut(s) 663
BstBI TTCGAA 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 1236
BstDEI CTNAG 6 cut(s) 412, 833, 861, 902, 1202, 1229
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 1004, 1067
BstHHI GCGC 1 cut(s) 1027
BstKTI GATC 7 cut(s) 208, 289, 325, 597, 718, 1129, 1306
BstMAI GTCTC 3 cut(s) 109, 642, 1086
BstMBI GATC 7 cut(s) 205, 286, 322, 594, 715, 1126, 1303
BstMWI GCNNNNNNNGC 4 cut(s) 353, 781, 1093, 1283
BstNI CCWGG 2 cut(s) 723, 793
BstSCI CCNGG 2 cut(s) 721, 791
BstSFI CTRYAG 1 cut(s) 1290
BstSLI GKGCMC 1 cut(s) 1008
BstV1I GCAGC 8 cut(s) 343, 412, 526, 563, 1156, 1273, 1276, 1299
BstV2I GAAGAC 1 cut(s) 1197
BstX2I RGATCY 1 cut(s) 205
BstXI CCANNNNNNTGG 2 cut(s) 82, 480
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 3 cut(s) 48, 86, 236
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 2 cut(s) 1004, 1067
BtsI GCAGTG 1 cut(s) 640
BtsIMutI CAGTG 4 cut(s) 427, 640, 693, 931
Cac8I GCNNGC 1 cut(s) 1236
CciI TCATGA 1 cut(s) 850
CfoI GCGC 1 cut(s) 1027
Cfr13I GGNCC 1 cut(s) 181
Csp6I GTAC 5 cut(s) 248, 561, 627, 664, 1123
CviAII CATG 5 cut(s) 33, 101, 518, 851, 1120
CviQI GTAC 5 cut(s) 248, 561, 627, 664, 1123
DdeI CTNAG 6 cut(s) 412, 833, 861, 902, 1202, 1229
DpnI GATC 7 cut(s) 207, 288, 324, 596, 717, 1128, 1305
DpnII GATC 7 cut(s) 205, 286, 322, 594, 715, 1126, 1303
EaeI YGGCCR 2 cut(s) 46, 84
Eam1104I CTCTTC 2 cut(s) 378, 1242
EarI CTCTTC 2 cut(s) 378, 1242
Eco130I CCWWGG 2 cut(s) 32, 81
Eco24I GRGCYC 1 cut(s) 1046
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 936
EcoRII CCWGG 2 cut(s) 721, 791
EcoT14I CCWWGG 2 cut(s) 32, 81
EcoT38I GRGCYC 1 cut(s) 1046
ErhI CCWWGG 2 cut(s) 32, 81
FaeI CATG 5 cut(s) 36, 104, 521, 854, 1123
FaqI GGGAC 2 cut(s) 167, 912
FatI CATG 5 cut(s) 32, 100, 517, 850, 1119
Fnu4HI GCNGC 8 cut(s) 357, 426, 515, 552, 1170, 1287, 1290, 1313
FokI GGATG 2 cut(s) 1011, 1074
FriOI GRGCYC 1 cut(s) 1046
Fsp4HI GCNGC 8 cut(s) 357, 426, 515, 552, 1170, 1287, 1290, 1313
FspBI CTAG 1 cut(s) 1235
GlaI GCGC 1 cut(s) 1026
GluI GCNGC 8 cut(s) 357, 426, 515, 552, 1170, 1287, 1290, 1313
GsuI CTGGAG 1 cut(s) 696
HaeIII GGCC 3 cut(s) 48, 86, 236
HapII CCGG 2 cut(s) 221, 332
HhaI GCGC 1 cut(s) 1027
Hin1II CATG 5 cut(s) 36, 104, 521, 854, 1123
Hin6I GCGC 1 cut(s) 1025
HinP1I GCGC 1 cut(s) 1025
HincII GTYRAC 1 cut(s) 964
HindII GTYRAC 1 cut(s) 964
HindIII AAGCTT 1 cut(s) 460
HinfI GANTC 3 cut(s) 691, 900, 1079
HpaII CCGG 2 cut(s) 221, 332
HphI GGTGA 2 cut(s) 144, 445
Hpy166II GTNNAC 2 cut(s) 664, 964
Hpy188I TCNGA 4 cut(s) 754, 880, 905, 976
Hpy188III TCNNGA 4 cut(s) 209, 713, 851, 1059
Hpy8I GTNNAC 2 cut(s) 664, 964
HpyCH4III ACNGT 1 cut(s) 926
HpyCH4IV ACGT 1 cut(s) 578
HpyF10VI GCNNNNNNNGC 4 cut(s) 353, 781, 1093, 1283
HpyF3I CTNAG 6 cut(s) 412, 833, 861, 902, 1202, 1229
HpySE526I ACGT 1 cut(s) 578
Hsp92II CATG 5 cut(s) 36, 104, 521, 854, 1123
HspAI GCGC 1 cut(s) 1025
KpnI GGTACC 1 cut(s) 251
Kzo9I GATC 7 cut(s) 205, 286, 322, 594, 715, 1126, 1303
LmnI GCTCC 3 cut(s) 144, 227, 871
Lsp1109I GCAGC 8 cut(s) 343, 412, 526, 563, 1156, 1273, 1276, 1299
LweI GCATC 2 cut(s) 15, 45
MaeI CTAG 1 cut(s) 1235
MaeII ACGT 1 cut(s) 578
MaeIII GTNAC 2 cut(s) 484, 1110
MalI GATC 7 cut(s) 207, 288, 324, 596, 717, 1128, 1305
MboI GATC 7 cut(s) 205, 286, 322, 594, 715, 1126, 1303
MboII GAAGA 5 cut(s) 281, 284, 395, 1202, 1259
MfeI CAATTG 2 cut(s) 798, 1035
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 3 cut(s) 1008, 1046, 1263
MlsI TGGCCA 2 cut(s) 48, 86
MluNI TGGCCA 2 cut(s) 48, 86
MlyI GAGTC 2 cut(s) 894, 1088
MmeI TCCRAC 1 cut(s) 849
MnlI CCTC 9 cut(s) 207, 226, 238, 546, 720, 1204, 1224, 1243, 1272
Mox20I TGGCCA 2 cut(s) 48, 86
MroXI GAANNNNTTC 1 cut(s) 846
MscI TGGCCA 2 cut(s) 48, 86
MseI TTAA 3 cut(s) 675, 1353, 1372
MslI CAYNNNNRTG 3 cut(s) 478, 530, 701
Msp20I TGGCCA 2 cut(s) 48, 86
MspI CCGG 2 cut(s) 221, 332
MspR9I CCNGG 2 cut(s) 723, 793
MunI CAATTG 2 cut(s) 798, 1035
Mva1269I GAATGC 1 cut(s) 1144
MvaI CCWGG 2 cut(s) 723, 793
MwoI GCNNNNNNNGC 4 cut(s) 353, 781, 1093, 1283
NcoI CCATGG 1 cut(s) 32
NdeII GATC 7 cut(s) 205, 286, 322, 594, 715, 1126, 1303
NheI GCTAGC 1 cut(s) 1234
NlaIII CATG 5 cut(s) 36, 104, 521, 854, 1123
NlaIV GGNNCC 6 cut(s) 140, 183, 207, 229, 249, 1005
NmeAIII GCCGAG 2 cut(s) 256, 616
NmuCI GTSAC 1 cut(s) 484
NspV TTCGAA 1 cut(s) 255
PagI TCATGA 1 cut(s) 850
PcsI WCGNNNNNNNCGW 2 cut(s) 261, 378
PctI GAATGC 1 cut(s) 1144
PdmI GAANNNNTTC 1 cut(s) 846
PfeI GAWTC 1 cut(s) 691
PflMI CCANNNNNTGG 1 cut(s) 1037
PkrI GCNGC 8 cut(s) 358, 427, 516, 553, 1171, 1288, 1291, 1314
PleI GAGTC 2 cut(s) 894, 1087
PpsI GAGTC 2 cut(s) 894, 1087
PshBI ATTAAT 1 cut(s) 675
Psp6I CCWGG 2 cut(s) 721, 791
PspGI CCWGG 2 cut(s) 721, 791
PspN4I GGNNCC 6 cut(s) 140, 183, 207, 229, 249, 1005
PspPI GGNCC 1 cut(s) 181
PstI CTGCAG 1 cut(s) 1294
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 5 cut(s) 249, 562, 628, 665, 1124
RsaNI GTAC 5 cut(s) 248, 561, 627, 664, 1123
RseI CAYNNNNRTG 3 cut(s) 478, 530, 701
SaqAI TTAA 3 cut(s) 675, 1353, 1372
SatI GCNGC 8 cut(s) 357, 426, 515, 552, 1170, 1287, 1290, 1313
Sau3AI GATC 7 cut(s) 205, 286, 322, 594, 715, 1126, 1303
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 2 cut(s) 894, 1088
ScrFI CCNGG 2 cut(s) 723, 793
SduI GDGCHC 3 cut(s) 1008, 1046, 1263
SfaNI GCATC 2 cut(s) 15, 45
SfcI CTRYAG 1 cut(s) 1290
SfuI TTCGAA 1 cut(s) 255
SinI GGWCC 1 cut(s) 181
SmiMI CAYNNNNRTG 3 cut(s) 478, 530, 701
SmlI CTYRAG 2 cut(s) 537, 1264
SmoI CTYRAG 2 cut(s) 537, 1264
SspMI CTAG 1 cut(s) 1235
StyD4I CCNGG 2 cut(s) 721, 791
StyI CCWWGG 2 cut(s) 32, 81
TaaI ACNGT 1 cut(s) 926
TaiI ACGT 1 cut(s) 581
TaqI TCGA 4 cut(s) 16, 243, 255, 372
TatI WGTACW 2 cut(s) 560, 663
TfiI GAWTC 1 cut(s) 691
Tru1I TTAA 3 cut(s) 675, 1353, 1372
Tru9I TTAA 3 cut(s) 675, 1353, 1372
TscAI CASTG 4 cut(s) 427, 640, 693, 931
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 8 cut(s) 356, 425, 514, 551, 1169, 1286, 1289, 1312
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 9 cut(s) 89, 100, 160, 304, 534, 839, 945, 1043, 1108
TspRI CASTG 4 cut(s) 427, 640, 693, 931
Van91I CCANNNNNTGG 1 cut(s) 1037
VpaK11BI GGWCC 1 cut(s) 181
VspI ATTAAT 1 cut(s) 675
XapI RAATTY 1 cut(s) 1017
XmnI GAANNNNTTC 1 cut(s) 846
XspI CTAG 1 cut(s) 1235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.