Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000733

Physical Location & Seq

Genomic Coordinates Reverse (-)

50330334 .. 50334999

Gene Structure 4666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG243100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCCTGTTCTGGATGCTGATCGGCTCTTGCCAGAAGGCGCCGAGGCCACCGTGGTGCCTTTTGGAAAGATCCACCACTTGAAGCTCACTGGGTGGTTGACACGGCTAAAGAGTATGGTGTTTCTCTGGCCTACTTCTCTCCTTTCTGTTCCGCGCGGTACCAATGTCATGACTGGCTCACCAGAACATCTAAATCAGGGTCCGCCATCACCCGGAAAGCTGGATATCCCCGACGGACTGGGTCCCCTTTCCGTCGACCTTGTAGCGTTTGAAGAGTATGAGACGGTTCCTGTGCATCAGGGTTTTATGGTGCAAATGGTTCTGGGATATATAAGTGATGCTGTATTTGTGAAAGAAACTGGGACCCAGAACATTGAATCAAAGCCAATGTTGTATCTGCAAGAGCTTACAACTCCTTCTTTATGCCTAACATCTGAAGCAGCAGAGGATAAGGGGTCAAGGCACATCATGATAATTGGTGTGCAGATTTTGCAATTCATGATGAGCATGGAGTTGATTGAGATAGCTGCCGAGAAAGCCATTCTGCATGGGGCTATGGCTGGTTGCTTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.83

Weight (kDa)

5.03

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05830 FvH4_7g15020 FvH4_7g15600 FvH4_7g15610 FvH4_7g15620 FvH4_7g15650
malus_domestica	MD00G1112100.v1.1 MD01G1068500.v1.1 MD01G1068700.v1.1 MD01G1068800.v1.1 MD03G1019100.v1.1
prunus_persica	Prupe.2G174700_v2.0.a1 Prupe.2G175000_v2.0.a1 Prupe.2G175000_v2.0.a1
pyrus_communis	pycom01g09780 pycom01g09790 pycom01g09820 pycom01g09840 pycom07g13020
rosa_chinensis	RchiOBHm_Chr1g0357061 RchiOBHm_Chr1g0357071 RchiOBHm_Chr1g0358281 RchiOBHm_Chr1g0358291 RchiOBHm_Chr1g0358321 RchiOBHm_Chr1g0358331
rosa_laevigata	RLG00000027973 RLG00000027974 RLG00000027975 RLG00000027976 RLG00000028053 RLG00000028054 RLG00000028055 RLG00000028057 RLG00000028153
rosa_multiflora	Rmu_sc0000166.1_g000044 Rmu_sc0000166.1_g000047 Rmu_sc0002071.1_g000024 Rmu_sc0002071.1_g000025 Rmu_sc0002144.1_g000001 Rmu_sc0013980.1_g000005 Rmu_sc0013980.1_g000013 Rmu_sc0013980.1_g000020 Rmu_sc0013980.1_g000023 Rmu_sc0016079.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298220 Rroxscaffold_4G00298250 Rroxscaffold_4G00299080
rosa_rugosa	Rorug01G0246700 Rorug01G0254000 Rorug01G0254100 Rorug01G0260600 Rorug01G0261000
rosa_samantha	Rh1AG267700 Rh1AG267800 Rh1AG268200 Rh1AG274700 Rh1BG235600 Rh1BG235700 Rh1BG235900 Rh1BG241500 Rh1CG243100 Rh1CG251700 Rh1CG251900 Rh1CG257800 Rh1DG263000 Rh1DG263100 Rh1DG263200 Rh1DG270300
rosa_wichuraiana	Rw1G023630 Rw1G023640 Rw1G023670 Rw1G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	3 cut(s)	38, 55, 158
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	2 cut(s)	154, 156
AciI	CCGC	3 cut(s)	152, 156, 203
AclWI	GGATC	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	456
AcyI	GRCGYC	1 cut(s)	39
AdeI	CACNNNGTG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	82, 272, 377
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	4 cut(s)	85, 220, 406, 527
AluI	AGCT	4 cut(s)	85, 220, 406, 527
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	64
AoxI	GGCC	2 cut(s)	45, 128
ApeKI	GCWGC	2 cut(s)	440, 527
Asp718I	GGTACC	1 cut(s)	158
AspLEI	GCGC	2 cut(s)	41, 156
AspS9I	GGNCC	3 cut(s)	200, 242, 363
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	171, 201
AvaII	GGWCC	3 cut(s)	200, 242, 363
BaeI	ACNNNNGTAYC	2 cut(s)	150, 183
BanI	GGYRCC	3 cut(s)	38, 55, 158
BbvI	GCAGC	2 cut(s)	452, 514
BccI	CCATC	1 cut(s)	214
BceAI	ACGGC	1 cut(s)	119
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	275
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	2 cut(s)	441, 528
BlsI	GCNGC	2 cut(s)	442, 529
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	3 cut(s)	200, 242, 363
BmgT120I	GGNCC	3 cut(s)	200, 242, 363
BmiI	GGNNCC	9 cut(s)	40, 57, 160, 201, 243, 244, 288, 364, 365
BmrFI	CCNGG	1 cut(s)	213
BmrI	ACTGGG	3 cut(s)	99, 248, 369
BmsI	GCATC	3 cut(s)	4, 304, 328
BmuI	ACTGGG	3 cut(s)	99, 248, 369
BpuMI	CCSGG	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	42, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	4 cut(s)	94, 178, 243, 364
Bse8I	GATNNNNATC	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	42, 51
BseGI	GGATG	1 cut(s)	19
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseNI	ACTGG	4 cut(s)	94, 178, 243, 364
BseXI	GCAGC	2 cut(s)	452, 514
BsgI	GTGCAG	1 cut(s)	503
Bsh1236I	CGCG	2 cut(s)	154, 156
BshFI	GGCC	2 cut(s)	47, 130
BshNI	GGYRCC	3 cut(s)	38, 55, 158
BsiSI	CCGG	1 cut(s)	213
BslFI	GGGAC	2 cut(s)	228, 376
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	275
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	2 cut(s)	228, 376
BsnI	GGCC	2 cut(s)	47, 130
Bsp143I	GATC	2 cut(s)	19, 69
BspACI	CCGC	3 cut(s)	152, 156, 203
BspANI	GGCC	2 cut(s)	47, 130
BspFNI	CGCG	2 cut(s)	154, 156
BspHI	TCATGA	3 cut(s)	168, 468, 498
BspLI	GGNNCC	9 cut(s)	40, 57, 160, 201, 243, 244, 288, 364, 365
BspPI	GGATC	1 cut(s)	64
BspT107I	GGYRCC	3 cut(s)	38, 55, 158
BsrI	ACTGG	4 cut(s)	94, 178, 243, 364
BssECI	CCNNGG	2 cut(s)	42, 51
BssMI	GATC	2 cut(s)	19, 69
BssNI	GRCGYC	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	52, 286
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	490
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	19
BstFNI	CGCG	2 cut(s)	154, 156
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	41, 156
BstKTI	GATC	2 cut(s)	22, 72
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	2 cut(s)	19, 69
BstMWI	GCNNNNNNNGC	2 cut(s)	490, 536
BstSCI	CCNGG	1 cut(s)	211
BstUI	CGCG	2 cut(s)	154, 156
BstV1I	GCAGC	2 cut(s)	452, 514
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	47, 130
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	87
CciI	TCATGA	3 cut(s)	168, 468, 498
CfoI	GCGC	2 cut(s)	41, 156
Cfr13I	GGNCC	3 cut(s)	200, 242, 363
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	5 cut(s)	169, 469, 499, 508, 548
CviQI	GTAC	1 cut(s)	159
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	2 cut(s)	21, 71
DpnII	GATC	2 cut(s)	19, 69
DraIII	CACNNNGTG	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	3 cut(s)	200, 242, 363
Eco57I	CTGAAG	1 cut(s)	456
EcoO109I	RGGNCCY	2 cut(s)	242, 363
EcoRV	GATATC	1 cut(s)	226
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	5 cut(s)	172, 472, 502, 511, 551
FaqI	GGGAC	2 cut(s)	228, 376
FatI	CATG	5 cut(s)	168, 468, 498, 507, 547
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	441, 528
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	441, 528
GlaI	GCGC	2 cut(s)	40, 155
GluI	GCNGC	2 cut(s)	441, 528
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	47, 130
HapII	CCGG	1 cut(s)	213
HhaI	GCGC	2 cut(s)	41, 156
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	172, 472, 502, 511, 551
Hin6I	GCGC	2 cut(s)	39, 154
HinP1I	GCGC	2 cut(s)	39, 154
HincII	GTYRAC	2 cut(s)	99, 256
HindII	GTYRAC	2 cut(s)	99, 256
HinfI	GANTC	1 cut(s)	377
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	2 cut(s)	171, 201
Hpy166II	GTNNAC	2 cut(s)	99, 256
Hpy188I	TCNGA	1 cut(s)	436
Hpy188III	TCNNGA	4 cut(s)	11, 169, 469, 499
Hpy8I	GTNNAC	2 cut(s)	99, 256
Hpy99I	CGWCG	2 cut(s)	236, 257
HpyAV	CCTTC	2 cut(s)	29, 426
HpyCH4III	ACNGT	2 cut(s)	52, 286
HpyCH4V	TGCA	6 cut(s)	295, 313, 400, 484, 493, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	490, 536
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	5 cut(s)	172, 472, 502, 511, 551
HspAI	GCGC	2 cut(s)	39, 154
KasI	GGCGCC	1 cut(s)	38
KflI	GGGWCCC	2 cut(s)	242, 363
KpnI	GGTACC	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	19, 69
Lsp1109I	GCAGC	2 cut(s)	452, 514
LweI	GCATC	3 cut(s)	4, 304, 328
MalI	GATC	2 cut(s)	21, 71
MboI	GATC	2 cut(s)	19, 69
MboII	GAAGA	1 cut(s)	284
MflI	RGATCY	1 cut(s)	69
MluCI	AATT	2 cut(s)	474, 494
Mly113I	GGCGCC	1 cut(s)	39
MnlI	CCTC	2 cut(s)	37, 439
MslI	CAYNNNNRTG	1 cut(s)	53
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	213
MvnI	CGCG	2 cut(s)	154, 156
MwoI	GCNNNNNNNGC	2 cut(s)	490, 536
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	2 cut(s)	19, 69
NlaIII	CATG	5 cut(s)	172, 472, 502, 511, 551
NlaIV	GGNNCC	9 cut(s)	40, 57, 160, 201, 243, 244, 288, 364, 365
NmeAIII	GCCGAG	2 cut(s)	67, 556
OliI	CACNNNNGTG	1 cut(s)	53
PagI	TCATGA	3 cut(s)	168, 468, 498
PfeI	GAWTC	1 cut(s)	377
PflFI	GACNNNGTC	1 cut(s)	240
PkrI	GCNGC	2 cut(s)	442, 529
PluTI	GGCGCC	1 cut(s)	42
PpuMI	RGGWCCY	2 cut(s)	242, 363
Psp5II	RGGWCCY	2 cut(s)	242, 363
PspN4I	GGNNCC	9 cut(s)	40, 57, 160, 201, 243, 244, 288, 364, 365
PspPI	GGNCC	3 cut(s)	200, 242, 363
PspPPI	RGGWCCY	2 cut(s)	242, 363
PsuI	RGATCY	1 cut(s)	69
PsyI	GACNNNGTC	1 cut(s)	240
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	53
SalI	GTCGAC	1 cut(s)	254
SatI	GCNGC	2 cut(s)	441, 528
Sau3AI	GATC	2 cut(s)	19, 69
Sau96I	GGNCC	3 cut(s)	200, 242, 363
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	5 cut(s)	87, 222, 261, 408, 529
SfaNI	GCATC	3 cut(s)	4, 304, 328
SfoI	GGCGCC	1 cut(s)	40
SinI	GGWCC	3 cut(s)	200, 242, 363
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse9I	AATT	2 cut(s)	474, 494
SsiI	CCGC	3 cut(s)	152, 156, 203
SspDI	GGCGCC	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	2 cut(s)	52, 286
TaqI	TCGA	1 cut(s)	255
TasI	AATT	2 cut(s)	474, 494
TfiI	GAWTC	1 cut(s)	377
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	2 cut(s)	440, 527
TspDTI	ATGAA	1 cut(s)	487
TspGWI	ACGGA	2 cut(s)	241, 249
TspRI	CASTG	1 cut(s)	94
Tth111I	GACNNNGTC	1 cut(s)	240
VpaK11BI	GGWCC	3 cut(s)	200, 242, 363
XmiI	GTMKAC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.