RLG00000027976

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000733
Physical Location & Seq
Reverse (-)
17442563 .. 17444014
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027976

Sequence Viewer

Length: 1452 bp
ATGGGAAACGAGCTTCGAGTTGTGATGCTTCCATGGTCTGCCTTTGGCCATTTGATGCCCTTCTTTCAACTCTCCATAGCCTTGGCCAAAGCCAAAGTTCATGTCTCCTTCATATCAACCCCAAGAAACATTCACAGGCTCCCCAAAATCTCACCTGATTTACAACCTTTCATACACTTGGTCCCCATTCCATTTCCTCGTTTGGATCCTGACTTCTTGCCGGAAGGAGCCGAGGCCAGTATCGAGGTACCCTTCGAAAAAACCGAAAACTTATATATGGCATACGATCTTCTTCAAACACCCATCAAGCATTTCATTGCAGATCAAATGCCGGATTGGATAATTGCCGATTTTGCTGCTCATTGGTTGGTCGAAATTGCCGAAGAGTATGGTATTCCACTTGCCTACTTCTCAGTTTTCAGTGCTGCAACCAGTGTTTTCATGGGCCCACCTGAATATCTCACTGGTGCAAACAGAAATTATGCTCTCCCATCACCACAAAGCTTGACATCTCCACGAGAATGGGTCACTTTTCCTTCTTTGGTGGCATTGAAGGAGCATGAAGCCATTTATGTGCCTCAAGGGTCTTTCGCAGCAAATAGTACAGGGATAAGTCTTACGTCAAGGTTTGCCAAGATCATATCAGCAAGTCAAGTTTTGGCTATTCGTACTTGCAGTGAGATTGAAGGAGACTACTTGGAAGTGTACAAGAAAATTAATGGAAAGCCAGTGATTCCCATTGGTGTGCTTCCTCCAGATCAACCTGGGAAAAGAGCAAAAGGGGAAATAAACTCCAATGGGGCTATGTTTGATTGGCTTGATAAGCAAAAACCCAGGTCAATTGTGTTTGTGGGGTTTGGAAGTGAGTGTAAGCTGAGCAAAGAACAAGTTCATGAGATAGCTCATGGGTTGGAGCTTTCAGAATTGCCTTTTATTTGGGGACTCAGAAAACCCATTTCAGCTAACAGTGATGAAGTAGATGATTTTCTGCCTTCAGGTTTTGTTGACAGAACATCAGAGAAAGGGCTTGTTTGCTTTGGATGGGTGCCCCAAATGGAAATTTTGGCGCACCCATCAATTGGGGGCTCTTTGTTTCATTCTGGATGGGGTTCTGTGATTGAGACTCTGCAATTTGGGCATTGCCTTGTTGTGTTACCCTTCATGTACGATCAGCCTTTGAATGCAAGGCTTTTGGTAGAGAAGGGTCTGGCTGCCGAAGTGAAGTGCAACGAAGACGGGTCGCTTAGTAGAGAGGAAATAGCAAAAACGCTGAGGCTAGCAATGGTGGAAGAGGGAGGAGAGCACTTGAGAAGCAATGCGAGGAAAGCTGCTGCAGTTTTTGGAGATCACAAGCTGCACCAAGACCACTACATCGGTGCATTTGTCGATTATCTTAAAAATAATGTTGCAAATGAAGAGGTGATCTATCGATCATCCATGGATCGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

484

Amino Acids

53.78

Weight (kDa)

5.66

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 278 - 425 5.1e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 247
AccB1I GGYRCC 2 cut(s) 247, 1045
AccB7I CCANNNNNTGG 1 cut(s) 1079
AclWI GGATC 3 cut(s) 200, 213, 1449
AcoI YGGCCR 2 cut(s) 46, 84
AcsI RAATTY 1 cut(s) 1059
AcuI CTGAAG 1 cut(s) 978
AfaI GTAC 5 cut(s) 249, 604, 670, 707, 1166
AfiI CCNNNNNNNGG 1 cut(s) 1079
AgsI TTSAA 5 cut(s) 68, 296, 553, 686, 1180
AjnI CCWGG 2 cut(s) 763, 833
AluBI AGCT 8 cut(s) 13, 504, 874, 902, 916, 962, 1328, 1354
AluI AGCT 8 cut(s) 13, 504, 874, 902, 916, 962, 1328, 1354
Alw21I GWGCWC 1 cut(s) 1305
Alw26I GTCTC 3 cut(s) 109, 684, 1115
AlwI GGATC 3 cut(s) 200, 213, 1449
AoxI GGCC 4 cut(s) 46, 84, 234, 445
ApaI GGGCCC 1 cut(s) 449
ApeKI GCWGC 7 cut(s) 356, 425, 593, 1211, 1328, 1331, 1354
ApoI RAATTY 1 cut(s) 1059
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
AseI ATTAAT 1 cut(s) 717
Asp700I GAANNNNTTC 1 cut(s) 888
Asp718I GGTACC 1 cut(s) 247
AspLEI GCGC 1 cut(s) 1069
AspS9I GGNCC 3 cut(s) 181, 445, 446
AsuHPI GGTGA 3 cut(s) 144, 486, 1432
AsuII TTCGAA 1 cut(s) 255
AsuNHI GCTAGC 1 cut(s) 1276
AvaII GGWCC 1 cut(s) 181
BaeGI GKGCMC 2 cut(s) 449, 1050
BalI TGGCCA 2 cut(s) 48, 86
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 2 cut(s) 247, 1045
BanII GRGCYC 2 cut(s) 449, 1088
BauI CACGAG 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 1239
Bbv12I GWGCWC 1 cut(s) 1305
BbvCI CCTCAGC 1 cut(s) 1271
BbvI GCAGC 7 cut(s) 343, 412, 605, 1198, 1315, 1318, 1341
BccI CCATC 5 cut(s) 311, 499, 1035, 1081, 1098
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 2 cut(s) 765, 835
BcoDI GTCTC 3 cut(s) 109, 684, 1115
BfaI CTAG 1 cut(s) 1277
BfmI CTRYAG 1 cut(s) 1332
BisI GCNGC 7 cut(s) 357, 426, 594, 1212, 1329, 1332, 1355
BlpI GCTNAGC 1 cut(s) 875
BlsI GCNGC 7 cut(s) 358, 427, 595, 1213, 1330, 1333, 1356
Bme1390I CCNGG 2 cut(s) 765, 835
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 3 cut(s) 181, 445, 446
BmiI GGNNCC 7 cut(s) 140, 183, 207, 229, 249, 447, 1047
BmrFI CCNGG 2 cut(s) 765, 835
BmsI GCATC 2 cut(s) 15, 45
BmtI GCTAGC 1 cut(s) 1280
BpiI GAAGAC 1 cut(s) 1239
BpmI CTGGAG 1 cut(s) 738
Bpu10I CCTNAGC 1 cut(s) 1271
Bpu1102I GCTNAGC 1 cut(s) 875
Bpu14I TTCGAA 1 cut(s) 255
BpuEI CTTGAG 2 cut(s) 564, 1327
Bsa29I ATCGAT 1 cut(s) 1429
BsaJI CCNNGG 6 cut(s) 32, 81, 231, 764, 833, 1437
Bsc4I CCNNNNNNNGG 1 cut(s) 1079
Bse1I ACTGG 4 cut(s) 237, 432, 469, 728
Bse3DI GCAATG 4 cut(s) 315, 1138, 1287, 1321
BseBI CCWGG 2 cut(s) 765, 835
BseCI ATCGAT 1 cut(s) 1429
BseDI CCNNGG 6 cut(s) 32, 81, 231, 764, 833, 1437
BseGI GGATG 3 cut(s) 1046, 1109, 1433
BseLI CCNNNNNNNGG 1 cut(s) 1079
BseMI GCAATG 4 cut(s) 315, 1138, 1287, 1321
BseMII CTCAG 4 cut(s) 426, 866, 958, 1262
BseNI ACTGG 4 cut(s) 237, 432, 469, 728
BseRI GAGGAG 1 cut(s) 1311
BseSI GKGCMC 2 cut(s) 449, 1050
BseXI GCAGC 7 cut(s) 343, 412, 605, 1198, 1315, 1318, 1341
BsgI GTGCAG 1 cut(s) 1340
BshFI GGCC 4 cut(s) 48, 86, 236, 447
BshNI GGYRCC 2 cut(s) 247, 1045
BshVI ATCGAT 1 cut(s) 1429
BsiHKAI GWGCWC 1 cut(s) 1305
BsiSI CCGG 2 cut(s) 221, 332
BslFI GGGAC 2 cut(s) 167, 954
BslI CCNNNNNNNGG 1 cut(s) 1079
BsmAI GTCTC 3 cut(s) 109, 684, 1115
BsmFI GGGAC 2 cut(s) 167, 954
BsmI GAATGC 1 cut(s) 1186
BsnI GGCC 4 cut(s) 48, 86, 236, 447
Bsp119I TTCGAA 1 cut(s) 255
Bsp120I GGGCCC 1 cut(s) 445
Bsp1286I GDGCHC 4 cut(s) 449, 1050, 1088, 1305
Bsp1407I TGTACA 1 cut(s) 705
Bsp1720I GCTNAGC 1 cut(s) 875
Bsp19I CCATGG 2 cut(s) 32, 1437
BspANI GGCC 4 cut(s) 48, 86, 236, 447
BspCNI CTCAG 4 cut(s) 425, 867, 957, 1263
BspDI ATCGAT 1 cut(s) 1429
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 7 cut(s) 140, 183, 207, 229, 249, 447, 1047
BspMAI CTGCAG 1 cut(s) 1336
BspOI GCTAGC 1 cut(s) 1280
BspPI GGATC 3 cut(s) 200, 213, 1449
BspT104I TTCGAA 1 cut(s) 255
BspT107I GGYRCC 2 cut(s) 247, 1045
BsrDI GCAATG 4 cut(s) 315, 1138, 1287, 1321
BsrGI TGTACA 1 cut(s) 705
BsrI ACTGG 4 cut(s) 237, 432, 469, 728
BssECI CCNNGG 6 cut(s) 32, 81, 231, 764, 833, 1437
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 3 cut(s) 32, 81, 1437
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 2 cut(s) 765, 835
Bst4CI ACNGT 1 cut(s) 968
Bst6I CTCTTC 3 cut(s) 378, 1284, 1410
BstAUI TGTACA 1 cut(s) 705
BstBI TTCGAA 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 1278
BstDEI CTNAG 5 cut(s) 412, 875, 944, 1244, 1271
BstDSI CCRYGG 2 cut(s) 32, 1437
BstF5I GGATG 3 cut(s) 1046, 1109, 1433
BstHHI GCGC 1 cut(s) 1069
BstMAI GTCTC 3 cut(s) 109, 684, 1115
BstMWI GCNNNNNNNGC 4 cut(s) 353, 823, 1135, 1325
BstNI CCWGG 2 cut(s) 765, 835
BstSCI CCNGG 2 cut(s) 763, 833
BstSFI CTRYAG 1 cut(s) 1332
BstSLI GKGCMC 2 cut(s) 449, 1050
BstV1I GCAGC 7 cut(s) 343, 412, 605, 1198, 1315, 1318, 1341
BstV2I GAAGAC 1 cut(s) 1239
BstX2I RGATCY 1 cut(s) 205
BstXI CCANNNNNNTGG 2 cut(s) 82, 522
BstYI RGATCY 1 cut(s) 205
Bsu15I ATCGAT 1 cut(s) 1429
BsuRI GGCC 4 cut(s) 48, 86, 236, 447
BsuTUI ATCGAT 1 cut(s) 1429
BtgI CCRYGG 2 cut(s) 32, 1437
BtsCI GGATG 3 cut(s) 1046, 1109, 1433
BtsI GCAGTG 1 cut(s) 682
BtsIMutI CAGTG 6 cut(s) 427, 439, 462, 682, 735, 973
Cac8I GCNNGC 1 cut(s) 1278
CciI TCATGA 1 cut(s) 892
CfoI GCGC 1 cut(s) 1069
Cfr13I GGNCC 3 cut(s) 181, 445, 446
ClaI ATCGAT 1 cut(s) 1429
Csp6I GTAC 5 cut(s) 248, 603, 669, 706, 1165
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CviAII CATG 8 cut(s) 33, 101, 442, 560, 893, 905, 1162, 1438
CviQI GTAC 5 cut(s) 248, 603, 669, 706, 1165
DdeI CTNAG 5 cut(s) 412, 875, 944, 1244, 1271
EaeI YGGCCR 2 cut(s) 46, 84
Eam1104I CTCTTC 3 cut(s) 378, 1284, 1410
EarI CTCTTC 3 cut(s) 378, 1284, 1410
Eco130I CCWWGG 3 cut(s) 32, 81, 1437
Eco24I GRGCYC 2 cut(s) 449, 1088
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 978
EcoRII CCWGG 2 cut(s) 763, 833
EcoT14I CCWWGG 3 cut(s) 32, 81, 1437
EcoT38I GRGCYC 2 cut(s) 449, 1088
ErhI CCWWGG 3 cut(s) 32, 81, 1437
FaeI CATG 8 cut(s) 36, 104, 445, 563, 896, 908, 1165, 1441
FaqI GGGAC 2 cut(s) 167, 954
FatI CATG 8 cut(s) 32, 100, 441, 559, 892, 904, 1161, 1437
Fnu4HI GCNGC 7 cut(s) 357, 426, 594, 1212, 1329, 1332, 1355
FokI GGATG 3 cut(s) 1053, 1116, 1420
FriOI GRGCYC 2 cut(s) 449, 1088
Fsp4HI GCNGC 7 cut(s) 357, 426, 594, 1212, 1329, 1332, 1355
FspBI CTAG 1 cut(s) 1277
GlaI GCGC 1 cut(s) 1068
GluI GCNGC 7 cut(s) 357, 426, 594, 1212, 1329, 1332, 1355
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 4 cut(s) 48, 86, 236, 447
HapII CCGG 2 cut(s) 221, 332
HhaI GCGC 1 cut(s) 1069
Hin1II CATG 8 cut(s) 36, 104, 445, 563, 896, 908, 1165, 1441
Hin6I GCGC 1 cut(s) 1067
HinP1I GCGC 1 cut(s) 1067
HincII GTYRAC 1 cut(s) 1006
HindII GTYRAC 1 cut(s) 1006
HindIII AAGCTT 1 cut(s) 502
HinfI GANTC 3 cut(s) 733, 942, 1123
HpaII CCGG 2 cut(s) 221, 332
HphI GGTGA 3 cut(s) 144, 486, 1432
Hpy166II GTNNAC 2 cut(s) 706, 1006
Hpy188I TCNGA 3 cut(s) 922, 947, 1018
Hpy188III TCNNGA 4 cut(s) 209, 755, 893, 1101
Hpy8I GTNNAC 2 cut(s) 706, 1006
HpyCH4III ACNGT 1 cut(s) 968
HpyCH4IV ACGT 1 cut(s) 620
HpyF10VI GCNNNNNNNGC 4 cut(s) 353, 823, 1135, 1325
HpyF3I CTNAG 5 cut(s) 412, 875, 944, 1244, 1271
HpySE526I ACGT 1 cut(s) 620
Hsp92II CATG 8 cut(s) 36, 104, 445, 563, 896, 908, 1165, 1441
HspAI GCGC 1 cut(s) 1067
KpnI GGTACC 1 cut(s) 251
LmnI GCTCC 4 cut(s) 144, 227, 556, 913
Lsp1109I GCAGC 7 cut(s) 343, 412, 605, 1198, 1315, 1318, 1341
LweI GCATC 2 cut(s) 15, 45
MaeI CTAG 1 cut(s) 1277
MaeII ACGT 1 cut(s) 620
MaeIII GTNAC 2 cut(s) 526, 1152
MboII GAAGA 6 cut(s) 281, 284, 395, 1244, 1301, 1427
MfeI CAATTG 2 cut(s) 840, 1077
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 4 cut(s) 449, 1050, 1088, 1305
MlsI TGGCCA 2 cut(s) 48, 86
MluCI AATT 9 cut(s) 342, 375, 478, 714, 840, 923, 1059, 1077, 1130
MluNI TGGCCA 2 cut(s) 48, 86
MlyI GAGTC 2 cut(s) 936, 1117
MmeI TCCRAC 1 cut(s) 891
Mox20I TGGCCA 2 cut(s) 48, 86
MroXI GAANNNNTTC 1 cut(s) 888
MscI TGGCCA 2 cut(s) 48, 86
MseI TTAA 2 cut(s) 717, 1395
MslI CAYNNNNRTG 3 cut(s) 520, 572, 743
Msp20I TGGCCA 2 cut(s) 48, 86
MspI CCGG 2 cut(s) 221, 332
MspR9I CCNGG 2 cut(s) 765, 835
MunI CAATTG 2 cut(s) 840, 1077
Mva1269I GAATGC 1 cut(s) 1186
MvaI CCWGG 2 cut(s) 765, 835
MwoI GCNNNNNNNGC 4 cut(s) 353, 823, 1135, 1325
NcoI CCATGG 2 cut(s) 32, 1437
NheI GCTAGC 1 cut(s) 1276
NlaIII CATG 8 cut(s) 36, 104, 445, 563, 896, 908, 1165, 1441
NlaIV GGNNCC 7 cut(s) 140, 183, 207, 229, 249, 447, 1047
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 526
NspV TTCGAA 1 cut(s) 255
PagI TCATGA 1 cut(s) 892
PcsI WCGNNNNNNNCGW 2 cut(s) 261, 378
PctI GAATGC 1 cut(s) 1186
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 1 cut(s) 733
PflMI CCANNNNNTGG 1 cut(s) 1079
PkrI GCNGC 7 cut(s) 358, 427, 595, 1213, 1330, 1333, 1356
PleI GAGTC 2 cut(s) 936, 1117
PpsI GAGTC 2 cut(s) 936, 1117
PshBI ATTAAT 1 cut(s) 717
Psp6I CCWGG 2 cut(s) 763, 833
PspGI CCWGG 2 cut(s) 763, 833
PspN4I GGNNCC 7 cut(s) 140, 183, 207, 229, 249, 447, 1047
PspOMI GGGCCC 1 cut(s) 445
PspPI GGNCC 3 cut(s) 181, 445, 446
PstI CTGCAG 1 cut(s) 1336
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 5 cut(s) 249, 604, 670, 707, 1166
RsaNI GTAC 5 cut(s) 248, 603, 669, 706, 1165
RseI CAYNNNNRTG 3 cut(s) 520, 572, 743
SaqAI TTAA 2 cut(s) 717, 1395
SatI GCNGC 7 cut(s) 357, 426, 594, 1212, 1329, 1332, 1355
Sau96I GGNCC 3 cut(s) 181, 445, 446
SchI GAGTC 2 cut(s) 936, 1117
ScrFI CCNGG 2 cut(s) 765, 835
SduI GDGCHC 4 cut(s) 449, 1050, 1088, 1305
SfaNI GCATC 2 cut(s) 15, 45
SfcI CTRYAG 1 cut(s) 1332
SfuI TTCGAA 1 cut(s) 255
SinI GGWCC 1 cut(s) 181
SmiMI CAYNNNNRTG 3 cut(s) 520, 572, 743
SmlI CTYRAG 2 cut(s) 579, 1306
SmoI CTYRAG 2 cut(s) 579, 1306
Sse9I AATT 9 cut(s) 342, 375, 478, 714, 840, 923, 1059, 1077, 1130
SspMI CTAG 1 cut(s) 1277
StyD4I CCNGG 2 cut(s) 763, 833
StyI CCWWGG 3 cut(s) 32, 81, 1437
TaaI ACNGT 1 cut(s) 968
TaiI ACGT 1 cut(s) 623
TaqI TCGA 6 cut(s) 16, 243, 255, 372, 1386, 1429
TasI AATT 9 cut(s) 342, 375, 478, 714, 840, 923, 1059, 1077, 1130
TatI WGTACW 2 cut(s) 602, 705
TfiI GAWTC 1 cut(s) 733
Tru1I TTAA 2 cut(s) 717, 1395
Tru9I TTAA 2 cut(s) 717, 1395
TscAI CASTG 6 cut(s) 427, 439, 469, 682, 735, 973
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 7 cut(s) 356, 425, 593, 1211, 1328, 1331, 1354
Tsp45I GTSAC 1 cut(s) 526
TspRI CASTG 6 cut(s) 427, 439, 469, 682, 735, 973
Van91I CCANNNNNTGG 1 cut(s) 1079
VpaK11BI GGWCC 1 cut(s) 181
VspI ATTAAT 1 cut(s) 717
XapI RAATTY 1 cut(s) 1059
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 1 cut(s) 1277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.