Rroxscaffold_4G00298220

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000733
Physical Location & Seq
Reverse (-)
18100326 .. 18102063
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298220.1

Sequence Viewer

Length: 1407 bp
ATGGGAAAAGAGCTACAAGTTGTGATGCTTCCATGGGCTTCCTTTGGCCATTTGTTGCCCTGCTTTCAACTTTCCATAGCCTTGGCCAAAGCCAAAGTTCATGTCTCCTTCATATCAACCCCAAGAAACATTCAAAGGCTCCCCAAAATCTCACTTGATTTACAACCTTTCATACACCTTGTCCCCATTCCATTTCCTCGTTTGGATCCTGACTTCTTGCCGGAAGGAGCCGAGGCCAGTATCGACATACCCTTGGAAAAAAACCAAAACTTAATGATGGCATACGATCTTCTTCAAACACCCATCAAGCTTTTCATTGCAGATAAAATGCCGGATTGGATAATTGCCGATTTCGCTGCTCATTGGGTGGTCGAAATTGCCAAAGAGTATGGTGTTCCACTTGCCTACTTCTCAGGTTTCAGTGCTGCAACCAGTGTTTTCTTTGGCCCACCTGAATATCTCACTGGTGCAAACAGAAACTATGCTCTCCCATCACCACAAAGCTTGACATCTCCACGAGAATGGGTCCCTTTTCCTTCTTTGGTGGCATTGAAGGAGCATGAAGCCATTTCTGTGCCGCAAAGGTCTTTCGCACCAAATAGTACAGGGATAAGTTTTATGTCAAGGATTGCCAAGATCATATCAGCAAGTCAAGTTTTGGCGATTCGTACTTGCAGTGAGATTGAAGGAGACTACTTGGAAGTGTACAAGAAAATTACTGGAAAGCCAGTGATTCCCATTGGTGTGCTTCCTCCAGATCAACCTGGGAAAAGGGAAATAAACTCCGATGGGGCTATTGTTGATTGGCTTGATAAGCAAAAACCCAGGTCAATTGTGTTTGTGGGGTTTGGGAGTGAGTGTAGGCTGAGCAAAGAACAAGTTCATGAGATAGCTCATGGGCTGGAGCTTTCAGAATTGCCATTTATTTGGGGACTCAGAAAACCCAATTCAGCTAACAGTGATGAAGTAGATGATTTTCTGCCTTTAGGTTTTGTTGACAGGACATCAGAGAAAGGGCTTGTTTGCTTTGGATGGGTACCCCAAATGGAAATTTTGGCGCACCCATCAGTTGGGGGCTCTTTGTTTCATTCTGGATGGGGTTCTGTGATTGAGACCCTGCAATTTGGGCATTGCCTTGTTGTGTTACCCTTCATGTATGATCAGCCTTTGAATGCAAGGCTTTTGGTAGAGAAGGGTCTGGCTGCGGAAGTGAAGCGCAACGAAGACGGGTCGCTTAGTAGAGAGGAAATAGCAAAAGCACTGAGGCTAGCAATGGTGGAAGAGGAAGGAGAGCACTTGAGAAGCAATGCGAGTAAAGCTGCTGCAGTTTTTGGAGATCACAAGCTGCACCAAGACCACTACATCGGTGCATTTGTCGATTATCTTAAAAATAATGTTGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

468

Amino Acids

51.89

Weight (kDa)

5.73

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 276 - 425 2e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1036
AccB1I GGYRCC 1 cut(s) 1036
AccB7I CCANNNNNTGG 1 cut(s) 1070
AciI CCGC 2 cut(s) 578, 1205
AclWI GGATC 2 cut(s) 200, 213
AcoI YGGCCR 2 cut(s) 46, 84
AcsI RAATTY 1 cut(s) 1050
AfaI GTAC 4 cut(s) 604, 670, 707, 1038
AfiI CCNNNNNNNGG 1 cut(s) 1070
AgsI TTSAA 6 cut(s) 68, 134, 296, 553, 686, 1171
AjnI CCWGG 2 cut(s) 763, 824
AluBI AGCT 8 cut(s) 13, 310, 504, 893, 907, 953, 1319, 1345
AluI AGCT 8 cut(s) 13, 310, 504, 893, 907, 953, 1319, 1345
Alw21I GWGCWC 1 cut(s) 1296
Alw26I GTCTC 3 cut(s) 109, 684, 1106
AlwI GGATC 2 cut(s) 200, 213
AoxI GGCC 4 cut(s) 46, 84, 234, 445
ApeKI GCWGC 6 cut(s) 356, 425, 1202, 1319, 1322, 1345
ApoI RAATTY 1 cut(s) 1050
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
Asp700I GAANNNNTTC 1 cut(s) 879
Asp718I GGTACC 1 cut(s) 1036
AspLEI GCGC 2 cut(s) 1060, 1218
AspS9I GGNCC 2 cut(s) 446, 526
AsuHPI GGTGA 1 cut(s) 486
AsuNHI GCTAGC 1 cut(s) 1267
AvaII GGWCC 1 cut(s) 526
BalI TGGCCA 2 cut(s) 48, 86
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 1036
BanII GRGCYC 1 cut(s) 1079
BauI CACGAG 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 1230
Bbv12I GWGCWC 1 cut(s) 1296
BbvI GCAGC 6 cut(s) 343, 412, 1189, 1306, 1309, 1332
BccI CCATC 7 cut(s) 271, 311, 499, 782, 1026, 1072, 1089
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 2 cut(s) 765, 826
BclI TGATCA 1 cut(s) 1159
BcoDI GTCTC 3 cut(s) 109, 684, 1106
BfaI CTAG 1 cut(s) 1268
BfmI CTRYAG 1 cut(s) 1323
BisI GCNGC 7 cut(s) 357, 426, 578, 1203, 1320, 1323, 1346
BlpI GCTNAGC 1 cut(s) 866
BlsI GCNGC 7 cut(s) 358, 427, 579, 1204, 1321, 1324, 1347
Bme1390I CCNGG 2 cut(s) 765, 826
Bme18I GGWCC 1 cut(s) 526
BmgT120I GGNCC 2 cut(s) 446, 526
BmiI GGNNCC 6 cut(s) 140, 207, 229, 527, 528, 1038
BmrFI CCNGG 2 cut(s) 765, 826
BmsI GCATC 1 cut(s) 15
BmtI GCTAGC 1 cut(s) 1271
BpiI GAAGAC 1 cut(s) 1230
BpmI CTGGAG 2 cut(s) 738, 923
Bpu1102I GCTNAGC 1 cut(s) 866
BpuEI CTTGAG 1 cut(s) 1318
BsaI GGTCTC 1 cut(s) 1106
BsaJI CCNNGG 6 cut(s) 32, 81, 231, 252, 764, 824
BsaXI ACNNNNNCTCC 2 cut(s) 844, 874
Bsc4I CCNNNNNNNGG 1 cut(s) 1070
Bse1I ACTGG 5 cut(s) 237, 432, 469, 724, 728
Bse3DI GCAATG 4 cut(s) 315, 1129, 1278, 1312
BseBI CCWGG 2 cut(s) 765, 826
BseDI CCNNGG 6 cut(s) 32, 81, 231, 252, 764, 824
BseGI GGATG 2 cut(s) 1037, 1100
BseLI CCNNNNNNNGG 1 cut(s) 1070
BseMI GCAATG 4 cut(s) 315, 1129, 1278, 1312
BseMII CTCAG 4 cut(s) 426, 857, 949, 1253
BseNI ACTGG 5 cut(s) 237, 432, 469, 724, 728
BseXI GCAGC 6 cut(s) 343, 412, 1189, 1306, 1309, 1332
BsgI GTGCAG 1 cut(s) 1331
BshFI GGCC 4 cut(s) 48, 86, 236, 447
BshNI GGYRCC 1 cut(s) 1036
BsiHKAI GWGCWC 1 cut(s) 1296
BsiSI CCGG 2 cut(s) 221, 332
BslFI GGGAC 3 cut(s) 167, 512, 945
BslI CCNNNNNNNGG 1 cut(s) 1070
BsmAI GTCTC 3 cut(s) 109, 684, 1106
BsmFI GGGAC 3 cut(s) 167, 512, 945
BsmI GAATGC 1 cut(s) 1177
BsnI GGCC 4 cut(s) 48, 86, 236, 447
Bso31I GGTCTC 1 cut(s) 1106
Bsp1286I GDGCHC 2 cut(s) 1079, 1296
Bsp1407I TGTACA 1 cut(s) 705
Bsp143I GATC 6 cut(s) 205, 286, 636, 757, 1159, 1336
Bsp1720I GCTNAGC 1 cut(s) 866
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 2 cut(s) 578, 1205
BspANI GGCC 4 cut(s) 48, 86, 236, 447
BspCNI CTCAG 4 cut(s) 425, 858, 948, 1254
BspHI TCATGA 1 cut(s) 883
BspLI GGNNCC 6 cut(s) 140, 207, 229, 527, 528, 1038
BspMAI CTGCAG 1 cut(s) 1327
BspOI GCTAGC 1 cut(s) 1271
BspPI GGATC 2 cut(s) 200, 213
BspT107I GGYRCC 1 cut(s) 1036
BspTNI GGTCTC 1 cut(s) 1106
BsrDI GCAATG 4 cut(s) 315, 1129, 1278, 1312
BsrGI TGTACA 1 cut(s) 705
BsrI ACTGG 5 cut(s) 237, 432, 469, 724, 728
BssECI CCNNGG 6 cut(s) 32, 81, 231, 252, 764, 824
BssMI GATC 6 cut(s) 205, 286, 636, 757, 1159, 1336
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 3 cut(s) 32, 81, 252
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 2 cut(s) 765, 826
Bst4CI ACNGT 1 cut(s) 959
Bst6I CTCTTC 1 cut(s) 1275
BstAUI TGTACA 1 cut(s) 705
BstC8I GCNNGC 1 cut(s) 1269
BstDEI CTNAG 5 cut(s) 412, 866, 935, 1235, 1262
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 1037, 1100
BstHHI GCGC 2 cut(s) 1060, 1218
BstKTI GATC 6 cut(s) 208, 289, 639, 760, 1162, 1339
BstMAI GTCTC 3 cut(s) 109, 684, 1106
BstMBI GATC 6 cut(s) 205, 286, 636, 757, 1159, 1336
BstMWI GCNNNNNNNGC 4 cut(s) 353, 814, 1126, 1316
BstNI CCWGG 2 cut(s) 765, 826
BstSCI CCNGG 2 cut(s) 763, 824
BstSFI CTRYAG 1 cut(s) 1323
BstV1I GCAGC 6 cut(s) 343, 412, 1189, 1306, 1309, 1332
BstV2I GAAGAC 1 cut(s) 1230
BstX2I RGATCY 1 cut(s) 205
BstXI CCANNNNNNTGG 3 cut(s) 82, 522, 927
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 4 cut(s) 48, 86, 236, 447
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 2 cut(s) 1037, 1100
BtsI GCAGTG 1 cut(s) 682
BtsIMutI CAGTG 7 cut(s) 427, 439, 462, 682, 735, 964, 1259
Cac8I GCNNGC 1 cut(s) 1269
CciI TCATGA 1 cut(s) 883
CfoI GCGC 2 cut(s) 1060, 1218
Cfr13I GGNCC 2 cut(s) 446, 526
Csp6I GTAC 4 cut(s) 603, 669, 706, 1037
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CviAII CATG 6 cut(s) 33, 101, 560, 884, 896, 1153
CviQI GTAC 4 cut(s) 603, 669, 706, 1037
DdeI CTNAG 5 cut(s) 412, 866, 935, 1235, 1262
DpnI GATC 6 cut(s) 207, 288, 638, 759, 1161, 1338
DpnII GATC 6 cut(s) 205, 286, 636, 757, 1159, 1336
EaeI YGGCCR 2 cut(s) 46, 84
Eam1104I CTCTTC 1 cut(s) 1275
EarI CTCTTC 1 cut(s) 1275
Eco130I CCWWGG 3 cut(s) 32, 81, 252
Eco24I GRGCYC 1 cut(s) 1079
Eco31I GGTCTC 1 cut(s) 1106
Eco47I GGWCC 1 cut(s) 526
EcoO109I RGGNCCY 1 cut(s) 526
EcoRII CCWGG 2 cut(s) 763, 824
EcoT14I CCWWGG 3 cut(s) 32, 81, 252
EcoT38I GRGCYC 1 cut(s) 1079
ErhI CCWWGG 3 cut(s) 32, 81, 252
FaeI CATG 6 cut(s) 36, 104, 563, 887, 899, 1156
FaqI GGGAC 3 cut(s) 167, 512, 945
FatI CATG 6 cut(s) 32, 100, 559, 883, 895, 1152
FbaI TGATCA 1 cut(s) 1159
Fnu4HI GCNGC 7 cut(s) 357, 426, 578, 1203, 1320, 1323, 1346
FokI GGATG 2 cut(s) 1044, 1107
FriOI GRGCYC 1 cut(s) 1079
Fsp4HI GCNGC 7 cut(s) 357, 426, 578, 1203, 1320, 1323, 1346
FspBI CTAG 1 cut(s) 1268
GlaI GCGC 2 cut(s) 1059, 1217
GluI GCNGC 7 cut(s) 357, 426, 578, 1203, 1320, 1323, 1346
GsuI CTGGAG 2 cut(s) 738, 923
HaeIII GGCC 4 cut(s) 48, 86, 236, 447
HapII CCGG 2 cut(s) 221, 332
HhaI GCGC 2 cut(s) 1060, 1218
Hin1II CATG 6 cut(s) 36, 104, 563, 887, 899, 1156
Hin6I GCGC 2 cut(s) 1058, 1216
HinP1I GCGC 2 cut(s) 1058, 1216
HincII GTYRAC 1 cut(s) 997
HindII GTYRAC 1 cut(s) 997
HindIII AAGCTT 2 cut(s) 308, 502
HinfI GANTC 3 cut(s) 664, 733, 933
HpaII CCGG 2 cut(s) 221, 332
HphI GGTGA 1 cut(s) 486
Hpy166II GTNNAC 2 cut(s) 706, 997
Hpy188I TCNGA 4 cut(s) 787, 913, 938, 1009
Hpy188III TCNNGA 4 cut(s) 209, 755, 884, 1092
Hpy8I GTNNAC 2 cut(s) 706, 997
HpyAV CCTTC 8 cut(s) 118, 218, 546, 547, 680, 1159, 1186, 1280
HpyCH4III ACNGT 1 cut(s) 959
HpyF10VI GCNNNNNNNGC 4 cut(s) 353, 814, 1126, 1316
HpyF3I CTNAG 5 cut(s) 412, 866, 935, 1235, 1262
Hsp92II CATG 6 cut(s) 36, 104, 563, 887, 899, 1156
HspAI GCGC 2 cut(s) 1058, 1216
KflI GGGWCCC 1 cut(s) 526
KpnI GGTACC 1 cut(s) 1040
Ksp22I TGATCA 1 cut(s) 1159
Kzo9I GATC 6 cut(s) 205, 286, 636, 757, 1159, 1336
LmnI GCTCC 4 cut(s) 144, 227, 556, 904
Lsp1109I GCAGC 6 cut(s) 343, 412, 1189, 1306, 1309, 1332
LweI GCATC 1 cut(s) 15
MaeI CTAG 1 cut(s) 1268
MaeIII GTNAC 1 cut(s) 1143
MalI GATC 6 cut(s) 207, 288, 638, 759, 1161, 1338
MboI GATC 6 cut(s) 205, 286, 636, 757, 1159, 1336
MboII GAAGA 4 cut(s) 281, 284, 1235, 1292
MfeI CAATTG 1 cut(s) 831
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 2 cut(s) 1079, 1296
MlsI TGGCCA 2 cut(s) 48, 86
MluCI AATT 9 cut(s) 342, 375, 714, 831, 914, 946, 1050, 1121, 1402
MluNI TGGCCA 2 cut(s) 48, 86
MlyI GAGTC 1 cut(s) 927
MnlI CCTC 6 cut(s) 207, 226, 762, 1237, 1257, 1276
Mox20I TGGCCA 2 cut(s) 48, 86
MroXI GAANNNNTTC 1 cut(s) 879
MscI TGGCCA 2 cut(s) 48, 86
MseI TTAA 3 cut(s) 272, 1386, 1405
MslI CAYNNNNRTG 3 cut(s) 520, 572, 743
Msp20I TGGCCA 2 cut(s) 48, 86
MspI CCGG 2 cut(s) 221, 332
MspR9I CCNGG 2 cut(s) 765, 826
MunI CAATTG 1 cut(s) 831
Mva1269I GAATGC 1 cut(s) 1177
MvaI CCWGG 2 cut(s) 765, 826
MwoI GCNNNNNNNGC 4 cut(s) 353, 814, 1126, 1316
NcoI CCATGG 1 cut(s) 32
NdeII GATC 6 cut(s) 205, 286, 636, 757, 1159, 1336
NheI GCTAGC 1 cut(s) 1267
NlaIII CATG 6 cut(s) 36, 104, 563, 887, 899, 1156
NlaIV GGNNCC 6 cut(s) 140, 207, 229, 527, 528, 1038
NmeAIII GCCGAG 1 cut(s) 256
PagI TCATGA 1 cut(s) 883
PctI GAATGC 1 cut(s) 1177
PdmI GAANNNNTTC 1 cut(s) 879
PfeI GAWTC 2 cut(s) 664, 733
PflMI CCANNNNNTGG 1 cut(s) 1070
PkrI GCNGC 7 cut(s) 358, 427, 579, 1204, 1321, 1324, 1347
PleI GAGTC 1 cut(s) 927
PpsI GAGTC 1 cut(s) 927
PpuMI RGGWCCY 1 cut(s) 526
Psp5II RGGWCCY 1 cut(s) 526
Psp6I CCWGG 2 cut(s) 763, 824
PspGI CCWGG 2 cut(s) 763, 824
PspN4I GGNNCC 6 cut(s) 140, 207, 229, 527, 528, 1038
PspPI GGNCC 2 cut(s) 446, 526
PspPPI RGGWCCY 1 cut(s) 526
PstI CTGCAG 1 cut(s) 1327
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 4 cut(s) 604, 670, 707, 1038
RsaNI GTAC 4 cut(s) 603, 669, 706, 1037
RseI CAYNNNNRTG 3 cut(s) 520, 572, 743
SaqAI TTAA 3 cut(s) 272, 1386, 1405
SatI GCNGC 7 cut(s) 357, 426, 578, 1203, 1320, 1323, 1346
Sau3AI GATC 6 cut(s) 205, 286, 636, 757, 1159, 1336
Sau96I GGNCC 2 cut(s) 446, 526
SchI GAGTC 1 cut(s) 927
ScrFI CCNGG 2 cut(s) 765, 826
SduI GDGCHC 2 cut(s) 1079, 1296
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 1323
SinI GGWCC 1 cut(s) 526
SmiMI CAYNNNNRTG 3 cut(s) 520, 572, 743
SmlI CTYRAG 1 cut(s) 1297
SmoI CTYRAG 1 cut(s) 1297
Sse9I AATT 9 cut(s) 342, 375, 714, 831, 914, 946, 1050, 1121, 1402
SsiI CCGC 2 cut(s) 578, 1205
SspMI CTAG 1 cut(s) 1268
StyD4I CCNGG 2 cut(s) 763, 824
StyI CCWWGG 3 cut(s) 32, 81, 252
TaaI ACNGT 1 cut(s) 959
TaqI TCGA 3 cut(s) 243, 372, 1377
TasI AATT 9 cut(s) 342, 375, 714, 831, 914, 946, 1050, 1121, 1402
TatI WGTACW 2 cut(s) 602, 705
TauI GCSGC 1 cut(s) 580
TfiI GAWTC 2 cut(s) 664, 733
Tru1I TTAA 3 cut(s) 272, 1386, 1405
Tru9I TTAA 3 cut(s) 272, 1386, 1405
TscAI CASTG 7 cut(s) 427, 439, 469, 682, 735, 964, 1266
TseI GCWGC 6 cut(s) 356, 425, 1202, 1319, 1322, 1345
TspDTI ATGAA 9 cut(s) 89, 100, 160, 304, 576, 872, 978, 1076, 1141
TspRI CASTG 7 cut(s) 427, 439, 469, 682, 735, 964, 1266
Van91I CCANNNNNTGG 1 cut(s) 1070
VpaK11BI GGWCC 1 cut(s) 526
XapI RAATTY 1 cut(s) 1050
XmnI GAANNNNTTC 1 cut(s) 879
XspI CTAG 1 cut(s) 1268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.