Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013980.1

Orthogroup ID

OG0000733

Physical Location & Seq

Genomic Coordinates Reverse (-)

91309 .. 93321

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013980.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgcaatttgggcattgccttcagtgtcttattgtgtcaccacccctcattgttgatcagcctttgaatgcaaggctcttggtggagaagggtctggctgttgaagtaaaacgcagggaagatgggtcgtttagtaaagaggacatagccaaaacactgagacatacaatggtggaagaggaaggacagcagctaagaaccaatgcaaggaaagctgcagcagtttttggagatcatacgttgcaccaagaccactacgttggagcatttgttcattatcttaaaacctactgtcaaatgccaaaagctttttcaaaactagaaactgacataaaccgattccaaacgggccgacctccatcactcctccttctgactggagttttcagttcgcagcccagatcgccgtcgcttctcttcgaccggattctgcagtcaacccagatcgccgtctcctcccttccactggattcttcagttcacagcctaagtccgactaaatcttgcacttcgtcacagcccacagatcgaccggtttcgactcagtcaggcgtcacgatctcccagtcaactcgcctccaacttggtcaactcgcctcaactcaatcaactcgcctcaactcggtcaactcacctcagttattaatcttatttccgctgcgtacttcggaatttgtgttgtttcctatttgtattattgcaatgggtggtgatgacaatgaaggtcagagttccaggatcaatgaggtccagaaagttgaggtttatgtccgtagtttagatggaggttcttttggaggtacgaaactcaatggtaccaactttcgaacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

277

Amino Acids

30.49

Weight (kDa)

8.84

Isoelectric Point (pI)

60.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05830 FvH4_7g15020 FvH4_7g15600 FvH4_7g15610 FvH4_7g15620 FvH4_7g15650
malus_domestica	MD00G1112100.v1.1 MD01G1068500.v1.1 MD01G1068700.v1.1 MD01G1068800.v1.1 MD03G1019100.v1.1
prunus_persica	Prupe.2G174700_v2.0.a1 Prupe.2G175000_v2.0.a1 Prupe.2G175000_v2.0.a1
pyrus_communis	pycom01g09780 pycom01g09790 pycom01g09820 pycom01g09840 pycom07g13020
rosa_chinensis	RchiOBHm_Chr1g0357061 RchiOBHm_Chr1g0357071 RchiOBHm_Chr1g0358281 RchiOBHm_Chr1g0358291 RchiOBHm_Chr1g0358321 RchiOBHm_Chr1g0358331
rosa_laevigata	RLG00000027973 RLG00000027974 RLG00000027975 RLG00000027976 RLG00000028053 RLG00000028054 RLG00000028055 RLG00000028057 RLG00000028153
rosa_multiflora	Rmu_sc0000166.1_g000044 Rmu_sc0000166.1_g000047 Rmu_sc0002071.1_g000024 Rmu_sc0002071.1_g000025 Rmu_sc0002144.1_g000001 Rmu_sc0013980.1_g000005 Rmu_sc0013980.1_g000013 Rmu_sc0013980.1_g000020 Rmu_sc0013980.1_g000023 Rmu_sc0016079.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298220 Rroxscaffold_4G00298250 Rroxscaffold_4G00299080
rosa_rugosa	Rorug01G0246700 Rorug01G0254000 Rorug01G0254100 Rorug01G0260600 Rorug01G0261000
rosa_samantha	Rh1AG267700 Rh1AG267800 Rh1AG268200 Rh1AG274700 Rh1BG235600 Rh1BG235700 Rh1BG235900 Rh1BG241500 Rh1CG243100 Rh1CG251700 Rh1CG251900 Rh1CG257800 Rh1DG263000 Rh1DG263100 Rh1DG263200 Rh1DG270300
rosa_wichuraiana	Rw1G023630 Rw1G023640 Rw1G023670 Rw1G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	815
AccB1I	GGYRCC	1 cut(s)	815
AciI	CCGC	1 cut(s)	656
AclWI	GGATC	1 cut(s)	746
AcsI	RAATTY	1 cut(s)	671
AcuI	CTGAAG	2 cut(s)	5, 459
AcyI	GRCGYC	1 cut(s)	552
AfaI	GTAC	3 cut(s)	664, 802, 817
AfiI	CCNNNNNNNGG	3 cut(s)	207, 466, 622
AgeI	ACCGGT	1 cut(s)	532
AgsI	TTSAA	3 cut(s)	67, 104, 315
AjnI	CCWGG	1 cut(s)	734
AjuI	GAANNNNNNNTTGG	2 cut(s)	295, 327
AloI	GAACNNNNNNTCC	2 cut(s)	255, 287
AluBI	AGCT	3 cut(s)	193, 215, 308
AluI	AGCT	3 cut(s)	193, 215, 308
Alw26I	GTCTC	2 cut(s)	154, 457
AlwI	GGATC	1 cut(s)	746
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	5 cut(s)	190, 215, 218, 394, 658
ApoI	RAATTY	1 cut(s)	671
AseI	ATTAAT	1 cut(s)	644
AsiGI	ACCGGT	1 cut(s)	532
Asp718I	GGTACC	1 cut(s)	815
AspS9I	GGNCC	2 cut(s)	349, 748
AsuHPI	GGTGA	3 cut(s)	30, 624, 722
AsuII	TTCGAA	1 cut(s)	826
AvaII	GGWCC	1 cut(s)	748
BanI	GGYRCC	1 cut(s)	815
BbvI	GCAGC	5 cut(s)	202, 202, 230, 406, 645
BccI	CCATC	3 cut(s)	116, 367, 776
BceAI	ACGGC	2 cut(s)	391, 434
BciT130I	CCWGG	1 cut(s)	736
BclI	TGATCA	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	154, 457
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	2 cut(s)	216, 431
BisI	GCNGC	5 cut(s)	191, 216, 219, 395, 659
BlsI	GCNGC	5 cut(s)	192, 217, 220, 396, 660
Bme1390I	CCNGG	1 cut(s)	736
Bme18I	GGWCC	1 cut(s)	748
BmgT120I	GGNCC	2 cut(s)	349, 748
BmiI	GGNNCC	1 cut(s)	817
BmrFI	CCNGG	1 cut(s)	736
BmrI	ACTGGG	1 cut(s)	559
BmuI	ACTGGG	1 cut(s)	559
BpmI	CTGGAG	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	826
BsaHI	GRCGYC	1 cut(s)	552
BsaWI	WCCGGW	2 cut(s)	423, 532
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 466, 622
Bse118I	RCCGGY	1 cut(s)	532
Bse1I	ACTGG	3 cut(s)	382, 471, 565
Bse3DI	GCAATG	2 cut(s)	13, 708
BseBI	CCWGG	1 cut(s)	736
BseLI	CCNNNNNNNGG	3 cut(s)	207, 466, 622
BseMI	GCAATG	2 cut(s)	13, 708
BseMII	CTCAG	3 cut(s)	149, 557, 650
BseNI	ACTGG	3 cut(s)	382, 471, 565
BseRI	GAGGAG	2 cut(s)	356, 445
BseXI	GCAGC	5 cut(s)	202, 202, 230, 406, 645
Bsh1285I	CGRYCG	2 cut(s)	424, 533
BshFI	GGCC	1 cut(s)	351
BshNI	GGYRCC	1 cut(s)	815
BshTI	ACCGGT	1 cut(s)	532
BsiEI	CGRYCG	2 cut(s)	424, 533
BsiSI	CCGG	2 cut(s)	424, 533
BslI	CCNNNNNNNGG	3 cut(s)	207, 466, 622
BsmAI	GTCTC	2 cut(s)	154, 457
BsmBI	CGTCTC	1 cut(s)	457
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	351
Bsp119I	TTCGAA	1 cut(s)	826
Bsp143I	GATC	7 cut(s)	55, 232, 401, 444, 526, 558, 738
BspACI	CCGC	1 cut(s)	656
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	3 cut(s)	150, 556, 649
BspLI	GGNNCC	1 cut(s)	817
BspMAI	CTGCAG	2 cut(s)	220, 435
BspPI	GGATC	1 cut(s)	746
BspT104I	TTCGAA	1 cut(s)	826
BspT107I	GGYRCC	1 cut(s)	815
BsrDI	GCAATG	2 cut(s)	13, 708
BsrFI	RCCGGY	1 cut(s)	532
BsrI	ACTGG	3 cut(s)	382, 471, 565
BssAI	RCCGGY	1 cut(s)	532
BssMI	GATC	7 cut(s)	55, 232, 401, 444, 526, 558, 738
BssNI	GRCGYC	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	736
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	2 cut(s)	171, 422
BstACI	GRCGYC	1 cut(s)	552
BstBI	TTCGAA	1 cut(s)	826
BstDEI	CTNAG	5 cut(s)	158, 194, 488, 543, 636
BstKTI	GATC	7 cut(s)	58, 235, 404, 447, 529, 561, 741
BstMAI	GTCTC	2 cut(s)	154, 457
BstMBI	GATC	7 cut(s)	55, 232, 401, 444, 526, 558, 738
BstMCI	CGRYCG	2 cut(s)	424, 533
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 212, 403
BstNI	CCWGG	1 cut(s)	736
BstSCI	CCNGG	1 cut(s)	734
BstSFI	CTRYAG	2 cut(s)	216, 431
BstV1I	GCAGC	5 cut(s)	202, 202, 230, 406, 645
BstXI	CCANNNNNNTGG	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	351
BtsIMutI	CAGTG	3 cut(s)	29, 155, 464
Cfr10I	RCCGGY	1 cut(s)	532
Cfr13I	GGNCC	2 cut(s)	349, 748
CseI	GACGC	1 cut(s)	541
Csp6I	GTAC	3 cut(s)	663, 801, 816
CspAI	ACCGGT	1 cut(s)	532
CviQI	GTAC	3 cut(s)	663, 801, 816
DdeI	CTNAG	5 cut(s)	158, 194, 488, 543, 636
DpnI	GATC	7 cut(s)	57, 234, 403, 446, 528, 560, 740
DpnII	GATC	7 cut(s)	55, 232, 401, 444, 526, 558, 738
Eam1104I	CTCTTC	2 cut(s)	171, 422
EarI	CTCTTC	2 cut(s)	171, 422
Eco47I	GGWCC	1 cut(s)	748
Eco57I	CTGAAG	2 cut(s)	5, 459
EcoRII	CCWGG	1 cut(s)	734
Esp3I	CGTCTC	1 cut(s)	457
FaiI	YATR	5 cut(s)	146, 165, 237, 332, 768
FbaI	TGATCA	1 cut(s)	55
Fnu4HI	GCNGC	5 cut(s)	191, 216, 219, 395, 659
Fsp4HI	GCNGC	5 cut(s)	191, 216, 219, 395, 659
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	5 cut(s)	191, 216, 219, 395, 659
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	351
HapII	CCGG	2 cut(s)	424, 533
HgaI	GACGC	1 cut(s)	541
Hin1I	GRCGYC	1 cut(s)	552
HincII	GTYRAC	4 cut(s)	438, 570, 590, 628
HindII	GTYRAC	4 cut(s)	438, 570, 590, 628
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	4 cut(s)	339, 427, 470, 541
HpaII	CCGG	2 cut(s)	424, 533
HphI	GGTGA	3 cut(s)	30, 624, 722
Hpy166II	GTNNAC	5 cut(s)	438, 481, 570, 590, 628
Hpy188I	TCNGA	4 cut(s)	375, 495, 670, 729
Hpy188III	TCNNGA	2 cut(s)	556, 751
Hpy8I	GTNNAC	5 cut(s)	438, 481, 570, 590, 628
Hpy99I	CGWCG	1 cut(s)	412
HpyAV	CCTTC	6 cut(s)	29, 82, 176, 380, 470, 716
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	3 cut(s)	239, 258, 830
HpyCH4V	TGCA	8 cut(s)	4, 71, 206, 218, 244, 433, 507, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 212, 403
HpyF3I	CTNAG	5 cut(s)	158, 194, 488, 543, 636
HpySE526I	ACGT	3 cut(s)	239, 258, 830
Hsp92I	GRCGYC	1 cut(s)	552
KpnI	GGTACC	1 cut(s)	819
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	7 cut(s)	55, 232, 401, 444, 526, 558, 738
LmnI	GCTCC	1 cut(s)	263
Lsp1109I	GCAGC	5 cut(s)	202, 202, 230, 406, 645
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	3 cut(s)	239, 258, 830
MaeIII	GTNAC	3 cut(s)	36, 513, 553
MalI	GATC	7 cut(s)	57, 234, 403, 446, 528, 560, 740
MboI	GATC	7 cut(s)	55, 232, 401, 444, 526, 558, 738
MboII	GAAGA	4 cut(s)	131, 188, 409, 465
MluCI	AATT	2 cut(s)	5, 671
MlyI	GAGTC	1 cut(s)	535
MmeI	TCCRAC	3 cut(s)	241, 518, 604
MseI	TTAA	2 cut(s)	282, 644
MspA1I	CMGCKG	1 cut(s)	658
MspI	CCGG	2 cut(s)	424, 533
MspR9I	CCNGG	1 cut(s)	736
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	736
MwoI	GCNNNNNNNGC	3 cut(s)	10, 212, 403
NdeII	GATC	7 cut(s)	55, 232, 401, 444, 526, 558, 738
NlaIV	GGNNCC	1 cut(s)	817
NmuCI	GTSAC	3 cut(s)	36, 513, 553
NspV	TTCGAA	1 cut(s)	826
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	3 cut(s)	339, 427, 470
PflFI	GACNNNGTC	1 cut(s)	544
PfoI	TCCNGGA	1 cut(s)	734
PinAI	ACCGGT	1 cut(s)	532
PkrI	GCNGC	5 cut(s)	192, 217, 220, 396, 660
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
PshBI	ATTAAT	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	734
PspGI	CCWGG	1 cut(s)	734
PspN4I	GGNNCC	1 cut(s)	817
PspPI	GGNCC	2 cut(s)	349, 748
PstI	CTGCAG	2 cut(s)	220, 435
PsyI	GACNNNGTC	1 cut(s)	544
RsaI	GTAC	3 cut(s)	664, 802, 817
RsaNI	GTAC	3 cut(s)	663, 801, 816
SaqAI	TTAA	2 cut(s)	282, 644
SatI	GCNGC	5 cut(s)	191, 216, 219, 395, 659
Sau3AI	GATC	7 cut(s)	55, 232, 401, 444, 526, 558, 738
Sau96I	GGNCC	2 cut(s)	349, 748
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	1 cut(s)	736
SfcI	CTRYAG	2 cut(s)	216, 431
SfuI	TTCGAA	1 cut(s)	826
SinI	GGWCC	1 cut(s)	748
Sse9I	AATT	2 cut(s)	5, 671
SsiI	CCGC	1 cut(s)	656
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	734
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	3 cut(s)	242, 261, 833
TaqI	TCGA	4 cut(s)	420, 529, 539, 826
TaqII	GACCGA	1 cut(s)	613
TasI	AATT	2 cut(s)	5, 671
TfiI	GAWTC	3 cut(s)	339, 427, 470
Tru1I	TTAA	2 cut(s)	282, 644
Tru9I	TTAA	2 cut(s)	282, 644
TscAI	CASTG	3 cut(s)	29, 162, 471
TseFI	GTSAC	3 cut(s)	36, 513, 553
TseI	GCWGC	5 cut(s)	190, 215, 218, 394, 658
Tsp45I	GTSAC	3 cut(s)	36, 513, 553
TspDTI	ATGAA	2 cut(s)	263, 735
TspGWI	ACGGA	1 cut(s)	761
TspRI	CASTG	3 cut(s)	29, 162, 471
Tth111I	GACNNNGTC	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	748
VspI	ATTAAT	1 cut(s)	644
XapI	RAATTY	1 cut(s)	671
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.