MD01G1068500.v1.1

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000733
Physical Location & Seq
Forward (+)
17253037 .. 17254563
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1068500.v1.1.491

Sequence Viewer

Length: 1527 bp
ATGTCATTTAGTCCAATAAACCGACAATCTCGTTCAGAACTACATTTTAATTCTCTCATTGCAAATTCCATCCCACAGAAAGAATACGATACAATTATGGAAAAAGATGATCATCTTAGCGTTGTGATGCTGCCATGGTCTGCCTTTGGCCACATGATGCCTTTTTTCCAACTTTCAATAGCTTTAGCAAAAGCGAAAGTTCATGTCTCCTTCATTTCCACACCAAAAAACATCCAAAGACTCCCCAAAATCTTACCAGATTTACAACCCTTTGTGCAGTTAGTCCCCATTCCATTTCCACCGTTGGATCCCGACTTATTGCCGGAAGGAGCTGAGGCCACCGTGGACCTCCCCTTTGAAAACACTGACAACTTGAAGATTGCATACGACCTCCTGCAAACACCCATCAAGCAGTTCATTGGGGATCGATTGCCTGATTGGATCATAACCGACTTTGTTGCTCATTGGGTTGCAGATATTGGCAAAGAGTACGGCGTTCCACTTGTCTATTTTTCTGTTTTCTCTGCTGCTTCAAGGATCGTTTATAGTCCAGCTGAAAATCTCTACGGTTGTAATACAACTGATGTTCTGCCATCGCCGGAAAGCCTTACTTCGCCACCGGATTTGCTTACTTCTCAGTCAACTGTCGCGTTCCGGGAGCGCGAGGCGGTCCATATACACGCAGGCTTTTATGGAGTGAACGAGTCCGGGATAAGTGATGCCGAAAGAAAAGCCAAGATTCTATCAGCTTGTCAAGTTCACGCCATTCGGAGCTGCGATGAGTTTGAAGGAGAGTACTTGGAGGCGTACAAGAACAACTGTAGGAAGCTTGTGATTCCCACAGGTTTGCTTCCTCCTGAGATACCTGCTAAAGGGGTAGAAAGGGAGATTTCCAGTGACGATGGGATCTTTGAATGGCTCGATAAGCAAAAAACCAGGTCAGTTGTGTTTGTAGGGTTTGGGAGTGAGTGTAAGTTGAGTAAAGCGCAAGTCTTTGAGATAGCTCATGGGCTGGAGCTATCACAACTCCCTTTTCTTTGGGCACTCAGAAAACCCAATTGGGCAACCAGTGAAGCTGATGCTCTGCCTCTCGGGTTTGTTGACCGTATATCAGATAAGGGGCTTGTTTGCTTCTTATGGGTGCCCCAAATGGAAATCTTGGCACACCCATCAGTTGGGGGTTCTTTGTTTCACTCTGGATGGGGATCAATAATTGAGACTCTGCAATTTGGGCATGTTCTTGTTGTGCTACCATTCATTATTGATCAGCCTCTCAATGCAAGGCTTTTGGAGGAGAAGGGTATGGCTGTCGAAGTGAAACGACTCGGAGATGGGTCGTTTAGTAGAGATGACATAGCCAAAACACTGCGGCATGCGATGGTGGAAGAGGAAGGAGAGCCGTTGAGATCCAATGCTAGGAAAGCTGCAACTGTTTTTGGAGATCACAAGCTGCACCAAGACCACTACATTGGCCAGTTTGTCAACTTTCTCAAAAACAACACTACAGAAAGGTCATCCTGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

509

Amino Acids

56.73

Weight (kDa)

5.43

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 312 - 460 2e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 874
AccB1I GGYRCC 1 cut(s) 1141
AccB7I CCANNNNNTGG 1 cut(s) 1175
AccII CGCG 2 cut(s) 650, 663
AciI CCGC 2 cut(s) 668, 1369
AclWI GGATC 8 cut(s) 302, 315, 432, 449, 545, 914, 1213, 1401
AcoI YGGCCR 2 cut(s) 148, 1471
AcsI RAATTY 1 cut(s) 64
AfaI GTAC 3 cut(s) 491, 797, 809
AfiI CCNNNNNNNGG 3 cut(s) 872, 1175, 1416
AgsI TTSAA 6 cut(s) 177, 359, 376, 534, 788, 914
AjnI CCWGG 1 cut(s) 935
AjuI GAANNNNNNNTTGG 2 cut(s) 1042, 1074
Alw26I GTCTC 2 cut(s) 211, 1211
AlwI GGATC 8 cut(s) 302, 315, 432, 449, 545, 914, 1213, 1401
Ama87I CYCGRG 1 cut(s) 1091
AoxI GGCC 3 cut(s) 148, 336, 1471
ApeKI GCWGC 5 cut(s) 130, 527, 774, 1424, 1450
ApoI RAATTY 1 cut(s) 64
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AspLEI GCGC 2 cut(s) 663, 988
AspS9I GGNCC 2 cut(s) 346, 670
AsuC2I CCSGG 2 cut(s) 656, 709
AvaI CYCGRG 1 cut(s) 1091
AvaII GGWCC 2 cut(s) 346, 670
BaeGI GKGCMC 2 cut(s) 1045, 1146
BalI TGGCCA 2 cut(s) 150, 1473
BamHI GGATCC 1 cut(s) 307
BanI GGYRCC 1 cut(s) 1141
BarI GAAGNNNNNNTAC 2 cut(s) 368, 400
BbvCI CCTCAGC 1 cut(s) 333
BbvI GCAGC 5 cut(s) 117, 514, 761, 1411, 1437
BccI CCATC 8 cut(s) 77, 413, 601, 896, 1177, 1194, 1325, 1372
BceAI ACGGC 2 cut(s) 508, 1384
BcgI CGANNNNNNTGC 2 cut(s) 440, 474
BciT130I CCWGG 1 cut(s) 937
BclI TGATCA 2 cut(s) 109, 1264
BcnI CCSGG 2 cut(s) 656, 709
BcoDI GTCTC 2 cut(s) 211, 1211
BfaI CTAG 1 cut(s) 1416
BfmI CTRYAG 2 cut(s) 820, 1503
BfuAI ACCTGC 1 cut(s) 874
BisI GCNGC 6 cut(s) 131, 528, 775, 1370, 1425, 1451
BlsI GCNGC 6 cut(s) 132, 529, 776, 1371, 1426, 1452
BmcAI AGTACT 1 cut(s) 797
Bme1390I CCNGG 3 cut(s) 656, 709, 937
Bme18I GGWCC 2 cut(s) 346, 670
BmeT110I CYCGRG 1 cut(s) 1091
BmgT120I GGNCC 2 cut(s) 346, 670
BmiI GGNNCC 2 cut(s) 309, 1143
BmrFI CCNGG 3 cut(s) 656, 709, 937
BmsI GCATC 4 cut(s) 117, 147, 709, 1069
BpmI CTGGAG 1 cut(s) 1034
Bpu10I CCTNAGC 1 cut(s) 333
BpuMI CCSGG 2 cut(s) 656, 709
Bsa29I ATCGAT 1 cut(s) 427
BsaBI GATNNNNATC 2 cut(s) 111, 1204
BsaJI CCNNGG 2 cut(s) 134, 342
BsaWI WCCGGW 1 cut(s) 619
BsaXI ACNNNNNCTCC 2 cut(s) 955, 985
Bsc4I CCNNNNNNNGG 3 cut(s) 872, 1175, 1416
Bse1I ACTGG 3 cut(s) 894, 1068, 1474
Bse3DI GCAATG 1 cut(s) 57
Bse8I GATNNNNATC 2 cut(s) 111, 1204
BseBI CCWGG 1 cut(s) 937
BseCI ATCGAT 1 cut(s) 427
BseDI CCNNGG 2 cut(s) 134, 342
BseGI GGATG 4 cut(s) 69, 231, 1205, 1514
BseJI GATNNNNATC 2 cut(s) 111, 1204
BseLI CCNNNNNNNGG 3 cut(s) 872, 1175, 1416
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 4 cut(s) 324, 650, 849, 1060
BseNI ACTGG 3 cut(s) 894, 1068, 1474
BseRI GAGGAG 1 cut(s) 1307
BseSI GKGCMC 2 cut(s) 1045, 1146
BseXI GCAGC 5 cut(s) 117, 514, 761, 1411, 1437
BsgI GTGCAG 2 cut(s) 296, 1436
Bsh1236I CGCG 2 cut(s) 650, 663
BshFI GGCC 3 cut(s) 150, 338, 1473
BshNI GGYRCC 1 cut(s) 1141
BshVI ATCGAT 1 cut(s) 427
BsiHKCI CYCGRG 1 cut(s) 1091
BsiSI CCGG 5 cut(s) 323, 599, 620, 655, 708
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 3 cut(s) 872, 1175, 1416
BsmAI GTCTC 2 cut(s) 211, 1211
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 3 cut(s) 150, 338, 1473
BsoBI CYCGRG 1 cut(s) 1091
Bsp1286I GDGCHC 2 cut(s) 1045, 1146
Bsp19I CCATGG 1 cut(s) 134
BspACI CCGC 2 cut(s) 668, 1369
BspANI GGCC 3 cut(s) 150, 338, 1473
BspCNI CTCAG 4 cut(s) 325, 649, 850, 1059
BspDI ATCGAT 1 cut(s) 427
BspFNI CGCG 2 cut(s) 650, 663
BspLI GGNNCC 2 cut(s) 309, 1143
BspMI ACCTGC 1 cut(s) 874
BspPI GGATC 8 cut(s) 302, 315, 432, 449, 545, 914, 1213, 1401
BspT107I GGYRCC 1 cut(s) 1141
BsrDI GCAATG 1 cut(s) 57
BsrI ACTGG 3 cut(s) 894, 1068, 1474
BssECI CCNNGG 2 cut(s) 134, 342
BssT1I CCWWGG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 937
Bst4CI ACNGT 7 cut(s) 303, 343, 569, 646, 821, 1106, 1432
Bst6I CTCTTC 1 cut(s) 1380
BstC8I GCNNGC 2 cut(s) 685, 1374
BstDEI CTNAG 6 cut(s) 116, 333, 636, 858, 1046, 1524
BstDSI CCRYGG 2 cut(s) 134, 342
BstENI CCTNNNNNAGG 1 cut(s) 870
BstF5I GGATG 4 cut(s) 69, 231, 1205, 1514
BstFNI CGCG 2 cut(s) 650, 663
BstHHI GCGC 2 cut(s) 663, 988
BstMAI GTCTC 2 cut(s) 211, 1211
BstMWI GCNNNNNNNGC 3 cut(s) 925, 1231, 1421
BstNI CCWGG 1 cut(s) 937
BstNSI RCATGY 2 cut(s) 1238, 1376
BstSCI CCNGG 3 cut(s) 654, 707, 935
BstSFI CTRYAG 2 cut(s) 820, 1503
BstSLI GKGCMC 2 cut(s) 1045, 1146
BstUI CGCG 2 cut(s) 650, 663
BstV1I GCAGC 5 cut(s) 117, 514, 761, 1411, 1437
BstX2I RGATCY 3 cut(s) 307, 906, 1406
BstXI CCANNNNNNTGG 1 cut(s) 1469
BstYI RGATCY 3 cut(s) 307, 906, 1406
Bsu15I ATCGAT 1 cut(s) 427
BsuRI GGCC 3 cut(s) 150, 338, 1473
BsuTUI ATCGAT 1 cut(s) 427
BtgI CCRYGG 2 cut(s) 134, 342
BtgZI GCGATG 3 cut(s) 579, 792, 1391
BtsCI GGATG 4 cut(s) 69, 231, 1205, 1514
BtsI GCAGTG 1 cut(s) 1364
BtsIMutI CAGTG 4 cut(s) 363, 901, 1075, 1364
BveI ACCTGC 1 cut(s) 874
Cac8I GCNNGC 2 cut(s) 685, 1374
CfoI GCGC 2 cut(s) 663, 988
Cfr13I GGNCC 2 cut(s) 346, 670
ClaI ATCGAT 1 cut(s) 427
CsiI ACCWGGT 1 cut(s) 935
Csp6I GTAC 3 cut(s) 490, 796, 808
CspCI CAANNNNNGTGG 2 cut(s) 606, 641
CviAII CATG 6 cut(s) 135, 154, 203, 1007, 1235, 1373
CviQI GTAC 3 cut(s) 490, 796, 808
DdeI CTNAG 6 cut(s) 116, 333, 636, 858, 1046, 1524
EaeI YGGCCR 2 cut(s) 148, 1471
Eam1104I CTCTTC 1 cut(s) 1380
EarI CTCTTC 1 cut(s) 1380
Eco130I CCWWGG 1 cut(s) 134
Eco47I GGWCC 2 cut(s) 346, 670
Eco88I CYCGRG 1 cut(s) 1091
EcoNI CCTNNNNNAGG 1 cut(s) 870
EcoRII CCWGG 1 cut(s) 935
EcoT14I CCWWGG 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 6 cut(s) 138, 157, 206, 1010, 1238, 1376
FalI AAGNNNNNCTT 2 cut(s) 595, 627
FaqI GGGAC 1 cut(s) 269
FatI CATG 6 cut(s) 134, 153, 202, 1006, 1234, 1372
FbaI TGATCA 2 cut(s) 109, 1264
Fnu4HI GCNGC 6 cut(s) 131, 528, 775, 1370, 1425, 1451
FokI GGATG 4 cut(s) 56, 218, 1212, 1501
Fsp4HI GCNGC 6 cut(s) 131, 528, 775, 1370, 1425, 1451
FspBI CTAG 1 cut(s) 1416
GlaI GCGC 2 cut(s) 662, 987
GluI GCNGC 6 cut(s) 131, 528, 775, 1370, 1425, 1451
GsuI CTGGAG 1 cut(s) 1034
HaeIII GGCC 3 cut(s) 150, 338, 1473
HapII CCGG 5 cut(s) 323, 599, 620, 655, 708
HhaI GCGC 2 cut(s) 663, 988
Hin1II CATG 6 cut(s) 138, 157, 206, 1010, 1238, 1376
Hin6I GCGC 2 cut(s) 661, 986
HinP1I GCGC 2 cut(s) 661, 986
HincII GTYRAC 3 cut(s) 642, 1102, 1483
HindII GTYRAC 3 cut(s) 642, 1102, 1483
HindIII AAGCTT 1 cut(s) 827
HinfI GANTC 6 cut(s) 240, 704, 739, 835, 1219, 1323
HpaII CCGG 5 cut(s) 323, 599, 620, 655, 708
Hpy166II GTNNAC 6 cut(s) 346, 642, 700, 760, 1102, 1483
Hpy188I TCNGA 5 cut(s) 37, 771, 1049, 1114, 1328
Hpy188III TCNNGA 3 cut(s) 311, 857, 1197
Hpy8I GTNNAC 6 cut(s) 346, 642, 700, 760, 1102, 1483
HpyAV CCTTC 5 cut(s) 220, 320, 782, 1291, 1385
HpyCH4III ACNGT 7 cut(s) 303, 343, 569, 646, 821, 1106, 1432
HpyCH4V TGCA 9 cut(s) 62, 277, 383, 397, 473, 1225, 1280, 1427, 1453
HpyF10VI GCNNNNNNNGC 3 cut(s) 925, 1231, 1421
HpyF3I CTNAG 6 cut(s) 116, 333, 636, 858, 1046, 1524
Hsp92II CATG 6 cut(s) 138, 157, 206, 1010, 1238, 1376
HspAI GCGC 2 cut(s) 661, 986
Ksp22I TGATCA 2 cut(s) 109, 1264
LmnI GCTCC 4 cut(s) 329, 658, 771, 1015
Lsp1109I GCAGC 5 cut(s) 117, 514, 761, 1411, 1437
LweI GCATC 4 cut(s) 117, 147, 709, 1069
MabI ACCWGGT 1 cut(s) 935
MaeI CTAG 1 cut(s) 1416
MaeIII GTNAC 1 cut(s) 896
MboII GAAGA 2 cut(s) 388, 1397
MfeI CAATTG 1 cut(s) 1057
MflI RGATCY 3 cut(s) 307, 906, 1406
MhlI GDGCHC 2 cut(s) 1045, 1146
MlsI TGGCCA 2 cut(s) 150, 1473
MluCI AATT 6 cut(s) 49, 64, 93, 1057, 1212, 1226
MluNI TGGCCA 2 cut(s) 150, 1473
MlyI GAGTC 4 cut(s) 234, 713, 1213, 1317
MmeI TCCRAC 2 cut(s) 193, 285
Mox20I TGGCCA 2 cut(s) 150, 1473
MscI TGGCCA 2 cut(s) 150, 1473
MseI TTAA 1 cut(s) 48
Msp20I TGGCCA 2 cut(s) 150, 1473
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 5 cut(s) 323, 599, 620, 655, 708
MspR9I CCNGG 3 cut(s) 656, 709, 937
MunI CAATTG 1 cut(s) 1057
MvaI CCWGG 1 cut(s) 937
MvnI CGCG 2 cut(s) 650, 663
MwoI GCNNNNNNNGC 3 cut(s) 925, 1231, 1421
NciI CCSGG 2 cut(s) 656, 709
NcoI CCATGG 1 cut(s) 134
NlaIII CATG 6 cut(s) 138, 157, 206, 1010, 1238, 1376
NlaIV GGNNCC 2 cut(s) 309, 1143
NmuCI GTSAC 1 cut(s) 896
NspI RCATGY 2 cut(s) 1238, 1376
PaeI GCATGC 1 cut(s) 1376
PfeI GAWTC 2 cut(s) 739, 835
PflMI CCANNNNNTGG 1 cut(s) 1175
PfoI TCCNGGA 2 cut(s) 654, 707
PkrI GCNGC 6 cut(s) 132, 529, 776, 1371, 1426, 1452
PleI GAGTC 4 cut(s) 234, 712, 1213, 1317
PpsI GAGTC 4 cut(s) 234, 712, 1213, 1317
Psp6I CCWGG 1 cut(s) 935
PspGI CCWGG 1 cut(s) 935
PspN4I GGNNCC 2 cut(s) 309, 1143
PspPI GGNCC 2 cut(s) 346, 670
PsuI RGATCY 3 cut(s) 307, 906, 1406
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 3 cut(s) 491, 797, 809
RsaNI GTAC 3 cut(s) 490, 796, 808
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 6 cut(s) 131, 528, 775, 1370, 1425, 1451
Sau96I GGNCC 2 cut(s) 346, 670
ScaI AGTACT 1 cut(s) 797
SchI GAGTC 4 cut(s) 234, 713, 1213, 1317
ScrFI CCNGG 3 cut(s) 656, 709, 937
SduI GDGCHC 2 cut(s) 1045, 1146
SexAI ACCWGGT 1 cut(s) 935
SfaNI GCATC 4 cut(s) 117, 147, 709, 1069
SfcI CTRYAG 2 cut(s) 820, 1503
SinI GGWCC 2 cut(s) 346, 670
SphI GCATGC 1 cut(s) 1376
Sse9I AATT 6 cut(s) 49, 64, 93, 1057, 1212, 1226
SsiI CCGC 2 cut(s) 668, 1369
SspMI CTAG 1 cut(s) 1416
StyD4I CCNGG 3 cut(s) 654, 707, 935
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 7 cut(s) 303, 343, 569, 646, 821, 1106, 1432
TaqI TCGA 3 cut(s) 427, 921, 1311
TasI AATT 6 cut(s) 49, 64, 93, 1057, 1212, 1226
TatI WGTACW 1 cut(s) 795
TauI GCSGC 1 cut(s) 1372
TfiI GAWTC 2 cut(s) 739, 835
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 4 cut(s) 370, 901, 1075, 1371
TseFI GTSAC 1 cut(s) 896
TseI GCWGC 5 cut(s) 130, 527, 774, 1424, 1450
Tsp45I GTSAC 1 cut(s) 896
TspDTI ATGAA 4 cut(s) 191, 202, 406, 1246
TspRI CASTG 4 cut(s) 370, 901, 1075, 1371
Van91I CCANNNNNTGG 1 cut(s) 1175
VpaK11BI GGWCC 2 cut(s) 346, 670
XagI CCTNNNNNAGG 1 cut(s) 870
XapI RAATTY 1 cut(s) 64
XceI RCATGY 2 cut(s) 1238, 1376
XspI CTAG 1 cut(s) 1416
ZrmI AGTACT 1 cut(s) 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.