pycom01g09840

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000733
Physical Location & Seq
Forward (+)
10633345 .. 10634163
819 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g09840.2

Sequence Viewer

Length: 621 bp
ATGGAAAAAGATGATCATCTAAGTGTTGTGATGCTGCCATGGTCTGCCTTTGTCCCCATTCCATTTCCACCGTTGCATCACGACTTATTGCCGGAAGGAGCTGAGGCCACGGTGGACCTCCCCTCTGAAAACACTGACAACTTGAAGATTGCATACGACCTCCGGTCCTGCAAAAACCCATCAAAGCAGTTCATTGTGGATCGATTGCCTGATTGGATCATAATCGACTCTGCTGCTCATTCGGCTGTAGAGATTGGCAAAGAGTACGTTGTTCCACTTGTCTATTTTTCTGTTTTCTCTGCTGCTACAAGGGCCTTTGTTAGTTCAGCACAAAACCTCTCAAGTCGTAATACAAATGATGTTCTGCGGTCGCTGAAAACCCTTACTTTGCCGCCGGATTTGGTTAATTCTAAGTCAACGGGGGAAATTTCCACTTATGATGGGATCTTTGAATGGCTCGATAAGCAAAAAACCAGGTCAGTTGTATTTGTAGGGTTTGGGAGTGAGTGTAAGTTGAGTAAAGAGCAAGTCTTTGAGATAGCTCATGGGCTGGAGCTATCAGAACTCCCTTTTCTTTGGGCACTCAGAAAACCTAATTGGGCAAATAAGAATGCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

207

Amino Acids

23.06

Weight (kDa)

5.37

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 367, 392
AclWI GGATC 3 cut(s) 207, 224, 452
AcsI RAATTY 1 cut(s) 426
AfaI GTAC 1 cut(s) 266
AgsI TTSAA 2 cut(s) 145, 452
AhdI GACNNNNNGTC 1 cut(s) 163
AjnI CCWGG 1 cut(s) 473
AjuI GAANNNNNNNTTGG 2 cut(s) 580, 612
AluBI AGCT 3 cut(s) 101, 542, 556
AluI AGCT 3 cut(s) 101, 542, 556
AlwI GGATC 3 cut(s) 207, 224, 452
AoxI GGCC 2 cut(s) 105, 312
ApeKI GCWGC 3 cut(s) 34, 233, 302
ApoI RAATTY 1 cut(s) 426
AspS9I GGNCC 3 cut(s) 115, 165, 312
AvaII GGWCC 2 cut(s) 115, 165
BaeGI GKGCMC 1 cut(s) 583
BarI GAAGNNNNNNTAC 2 cut(s) 137, 169
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 21, 220, 289
BccI CCATC 2 cut(s) 187, 434
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 1 cut(s) 475
BclI TGATCA 1 cut(s) 13
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 4 cut(s) 35, 234, 303, 392
BlsI GCNGC 4 cut(s) 36, 235, 304, 393
Bme1390I CCNGG 1 cut(s) 475
Bme18I GGWCC 2 cut(s) 115, 165
BmeRI GACNNNNNGTC 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 115, 165, 312
BmrFI CCNGG 1 cut(s) 475
BmsI GCATC 2 cut(s) 21, 85
BpmI CTGGAG 1 cut(s) 572
Bpu10I CCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 325
Bsa29I ATCGAT 1 cut(s) 202
BsaBI GATNNNNATC 2 cut(s) 15, 221
BsaJI CCNNGG 2 cut(s) 38, 108
BsaWI WCCGGW 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 493, 523
Bse8I GATNNNNATC 2 cut(s) 15, 221
BseBI CCWGG 1 cut(s) 475
BseCI ATCGAT 1 cut(s) 202
BseDI CCNNGG 2 cut(s) 38, 108
BseJI GATNNNNATC 2 cut(s) 15, 221
BseMII CTCAG 2 cut(s) 93, 598
BseSI GKGCMC 1 cut(s) 583
BseXI GCAGC 3 cut(s) 21, 220, 289
Bsh1285I CGRYCG 1 cut(s) 371
BshFI GGCC 2 cut(s) 107, 314
BshVI ATCGAT 1 cut(s) 202
BsiEI CGRYCG 1 cut(s) 371
BsiSI CCGG 3 cut(s) 92, 163, 395
BslFI GGGAC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 2 cut(s) 107, 314
Bsp1286I GDGCHC 1 cut(s) 583
Bsp143I GATC 4 cut(s) 13, 199, 216, 444
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 2 cut(s) 367, 392
BspANI GGCC 2 cut(s) 107, 314
BspCNI CTCAG 2 cut(s) 94, 597
BspDI ATCGAT 1 cut(s) 202
BspPI GGATC 3 cut(s) 207, 224, 452
BssECI CCNNGG 2 cut(s) 38, 108
BssMI GATC 4 cut(s) 13, 199, 216, 444
BssT1I CCWWGG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 475
Bst4CI ACNGT 2 cut(s) 72, 112
BstDEI CTNAG 4 cut(s) 20, 102, 411, 584
BstDSI CCRYGG 2 cut(s) 38, 108
BstKTI GATC 4 cut(s) 16, 202, 219, 447
BstMBI GATC 4 cut(s) 13, 199, 216, 444
BstMCI CGRYCG 1 cut(s) 371
BstMWI GCNNNNNNNGC 3 cut(s) 242, 311, 463
BstNI CCWGG 1 cut(s) 475
BstSCI CCNGG 1 cut(s) 473
BstSFI CTRYAG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 583
BstV1I GCAGC 3 cut(s) 21, 220, 289
BstX2I RGATCY 1 cut(s) 444
BstYI RGATCY 1 cut(s) 444
Bsu15I ATCGAT 1 cut(s) 202
BsuRI GGCC 2 cut(s) 107, 314
BsuTUI ATCGAT 1 cut(s) 202
BtgI CCRYGG 2 cut(s) 38, 108
BtsIMutI CAGTG 1 cut(s) 132
Cfr13I GGNCC 3 cut(s) 115, 165, 312
ClaI ATCGAT 1 cut(s) 202
CsiI ACCWGGT 1 cut(s) 473
Csp6I GTAC 1 cut(s) 265
CviAII CATG 2 cut(s) 39, 545
CviJI RGCY 8 cut(s) 101, 107, 245, 314, 457, 542, 550, 556
CviKI_1 RGCY 8 cut(s) 101, 107, 245, 314, 457, 542, 550, 556
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 4 cut(s) 20, 102, 411, 584
DpnI GATC 4 cut(s) 15, 201, 218, 446
DpnII GATC 4 cut(s) 13, 199, 216, 444
DriI GACNNNNNGTC 1 cut(s) 163
Eam1105I GACNNNNNGTC 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 115, 165
EcoO109I RGGNCCY 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 473
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 2 cut(s) 42, 548
FaiI YATR 5 cut(s) 40, 154, 221, 438, 546
FaqI GGGAC 1 cut(s) 38
FatI CATG 2 cut(s) 38, 544
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 4 cut(s) 35, 234, 303, 392
Fsp4HI GCNGC 4 cut(s) 35, 234, 303, 392
GluI GCNGC 4 cut(s) 35, 234, 303, 392
GsuI CTGGAG 1 cut(s) 572
HaeIII GGCC 2 cut(s) 107, 314
HapII CCGG 3 cut(s) 92, 163, 395
Hin1II CATG 2 cut(s) 42, 548
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HinfI GANTC 1 cut(s) 227
HpaII CCGG 3 cut(s) 92, 163, 395
Hpy166II GTNNAC 2 cut(s) 115, 417
Hpy188I TCNGA 3 cut(s) 127, 562, 587
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 2 cut(s) 115, 417
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 2 cut(s) 72, 112
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 3 cut(s) 76, 152, 171
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 311, 463
HpyF3I CTNAG 4 cut(s) 20, 102, 411, 584
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 2 cut(s) 42, 548
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 4 cut(s) 13, 199, 216, 444
LmnI GCTCC 2 cut(s) 98, 553
LpnPI CCDG 8 cut(s) 105, 176, 181, 222, 408, 460, 487, 536
Lsp1109I GCAGC 3 cut(s) 21, 220, 289
LweI GCATC 2 cut(s) 21, 85
MabI ACCWGGT 1 cut(s) 473
MaeII ACGT 1 cut(s) 267
MalI GATC 4 cut(s) 15, 201, 218, 446
MboI GATC 4 cut(s) 13, 199, 216, 444
MboII GAAGA 1 cut(s) 157
MflI RGATCY 1 cut(s) 444
MhlI GDGCHC 1 cut(s) 583
MluCI AATT 3 cut(s) 406, 426, 595
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 5 cut(s) 97, 128, 133, 170, 347
MseI TTAA 1 cut(s) 405
MslI CAYNNNNRTG 1 cut(s) 21
MspI CCGG 3 cut(s) 92, 163, 395
MspR9I CCNGG 1 cut(s) 475
Mva1269I GAATGC 1 cut(s) 616
MvaI CCWGG 1 cut(s) 475
MwoI GCNNNNNNNGC 3 cut(s) 242, 311, 463
NcoI CCATGG 1 cut(s) 38
NdeII GATC 4 cut(s) 13, 199, 216, 444
NlaIII CATG 2 cut(s) 42, 548
PctI GAATGC 1 cut(s) 616
PkrI GCNGC 4 cut(s) 36, 235, 304, 393
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 473
PspGI CCWGG 1 cut(s) 473
PspPI GGNCC 3 cut(s) 115, 165, 312
PsuI RGATCY 1 cut(s) 444
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 4 cut(s) 35, 234, 303, 392
Sau3AI GATC 4 cut(s) 13, 199, 216, 444
Sau96I GGNCC 3 cut(s) 115, 165, 312
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 475
SduI GDGCHC 1 cut(s) 583
SetI ASST 9 cut(s) 103, 120, 162, 270, 339, 479, 544, 558, 595
SexAI ACCWGGT 1 cut(s) 473
SfaNI GCATC 2 cut(s) 21, 85
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 2 cut(s) 115, 165
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
Sse9I AATT 3 cut(s) 406, 426, 595
SsiI CCGC 2 cut(s) 367, 392
StyD4I CCNGG 1 cut(s) 473
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 2 cut(s) 72, 112
TaiI ACGT 1 cut(s) 270
TaqI TCGA 3 cut(s) 202, 225, 459
TasI AATT 3 cut(s) 406, 426, 595
TauI GCSGC 1 cut(s) 394
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 1 cut(s) 139
TseI GCWGC 3 cut(s) 34, 233, 302
TspDTI ATGAA 1 cut(s) 181
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 2 cut(s) 115, 165
XapI RAATTY 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.