Rh1CG257800

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000733
Physical Location & Seq
Forward (+)
52224942 .. 52226944
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG257800.1

Sequence Viewer

Length: 1416 bp
ATGGGAAACGAGCTTCGAGTTGTGATGCTTCCATGGTCTGCCTTTGGCCATTTGATGCCCTTCTTTCAACTCTCCATAGCCTTGGCCAAAGCCAAAGTTCATGTCTCCTTCATATCAACCCCAAGAAACATTCACAGGCTCCCCAAAATCTCACCAGATTTACAACCTTTCATACACTTGGTCCCCATTCCATTTCCTCGTTTGGATCCTGACTTCTTGCCGGAAGGAGCCGAGGCCAGTATCGAGGTACCCTTCGAAAAAACCGAAAACTTATATATGGCATACGATCTTCTTCAAACACCCATCAAGCATTTCATTGCAGATCAAATGCCGGATTGGATAATTGCCGATTTTGCTGCTCATTGGGTGGTCGAAATTGCCGAAGAGTATGGTATTCCACTTGCCTACTTCTCAGTTTTCAGTGCTGCAACCAGTGTTTTCATGGGCCCACCTGAATATCTCACTGGTGCAAACAGAAATTATGCTCTCCCATCACCACAAAGCTTGACATCTCCACGAGAATGGGTCACTTTTCCTTCTTTGGTGGCATTGAAGCAGCATGAAGCCATTTATGTGCCTCAAGGGTCTTTCGCACCAAATAGTACAGGGATAAGTCTTACGTCAAGGTTTGCCGAGATCATATCAGCAAGTCAAGTTTTGGCTATTCGTACTTGCAGTGAGATTGAAGGAGACTACTTGGAAGTGTACAAGAAAATTAATGGAAAGCCAGTGATTCCCATTGGTGTGCTTCCTCCAGATCAACCTGGGAAAAGAGCAAAAGGGGAAATAAACTCCGATGGGGCTATGTTTGATTGGCTTGATAAGCAAAAACCCAGGTCAATTGTGTTTGTGGGGTTTGGGAGTGAGTGTAAGCTGAGCAAAGAACAAGTTCATGAGATAGCTCAGGGGTTGGAGCTTTCAGAATTGCCTTTTATTTGGGGACTCAGAAAACCCATTTCAGCTAACAGTGATGAAGTAGATGATTTTCTGCCTTCAGGTTTTGTTGACAGAACATCAGAGAAAGGGCTTGTTTGCTTTGGATGGGTGCCCCAAATGGAAATTTTGGCGCACCCATCAATTGGGGGCTCTTTGTTTCATTCTGGATGGGGTTCTGTGATTGAGTCTCTGCAATTTGGGCATTGCCTTGTTGTGTTACCCTTCATGTACGATCAGCCTTTGAATGCAAGGCTTTTGGTGGAGAAGGGTCTGGCTGCCGAAGTGAAGTGCAACGAAGACGGGTCGCTTCGTAGAGAGGAAATAGCAAAAACGCTGAGGCTAGCAATGGTGGAAGAGGAAGGAGAGCACTTGAGAAGCAATGCGAGGAAAGCTGCTGCAGTTTTTGGAGATCATAAGCTGCACCAAGACCACTACATCGGTGCATTTGTTGATTATCTTAAAAATAATGTTGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

471

Amino Acids

52.41

Weight (kDa)

5.49

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 278 - 411 3.6e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 247
AccB1I GGYRCC 2 cut(s) 247, 1045
AccB7I CCANNNNNTGG 1 cut(s) 1079
AclWI GGATC 2 cut(s) 200, 213
AcoI YGGCCR 2 cut(s) 46, 84
AcsI RAATTY 1 cut(s) 1059
AcuI CTGAAG 1 cut(s) 978
AfaI GTAC 5 cut(s) 249, 604, 670, 707, 1166
AfiI CCNNNNNNNGG 1 cut(s) 1079
AgsI TTSAA 5 cut(s) 68, 296, 553, 686, 1180
AjnI CCWGG 2 cut(s) 763, 833
AluBI AGCT 8 cut(s) 13, 504, 874, 902, 916, 962, 1328, 1354
AluI AGCT 8 cut(s) 13, 504, 874, 902, 916, 962, 1328, 1354
Alw21I GWGCWC 1 cut(s) 1305
Alw26I GTCTC 3 cut(s) 109, 684, 1128
AlwI GGATC 2 cut(s) 200, 213
AoxI GGCC 4 cut(s) 46, 84, 234, 445
ApaI GGGCCC 1 cut(s) 449
ApeKI GCWGC 7 cut(s) 356, 425, 556, 1211, 1328, 1331, 1354
ApoI RAATTY 1 cut(s) 1059
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
AseI ATTAAT 1 cut(s) 717
Asp700I GAANNNNTTC 1 cut(s) 888
Asp718I GGTACC 1 cut(s) 247
AspLEI GCGC 1 cut(s) 1069
AspS9I GGNCC 3 cut(s) 181, 445, 446
AsuHPI GGTGA 2 cut(s) 144, 486
AsuII TTCGAA 1 cut(s) 255
AsuNHI GCTAGC 1 cut(s) 1276
AvaII GGWCC 1 cut(s) 181
BaeGI GKGCMC 2 cut(s) 449, 1050
BalI TGGCCA 2 cut(s) 48, 86
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 2 cut(s) 247, 1045
BanII GRGCYC 2 cut(s) 449, 1088
BauI CACGAG 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 1239
Bbv12I GWGCWC 1 cut(s) 1305
BbvCI CCTCAGC 1 cut(s) 1271
BbvI GCAGC 7 cut(s) 343, 412, 568, 1198, 1315, 1318, 1341
BccI CCATC 6 cut(s) 311, 499, 791, 1035, 1081, 1098
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 2 cut(s) 765, 835
BcoDI GTCTC 3 cut(s) 109, 684, 1128
BfaI CTAG 1 cut(s) 1277
BfmI CTRYAG 1 cut(s) 1332
BisI GCNGC 7 cut(s) 357, 426, 557, 1212, 1329, 1332, 1355
BlpI GCTNAGC 1 cut(s) 875
BlsI GCNGC 7 cut(s) 358, 427, 558, 1213, 1330, 1333, 1356
Bme1390I CCNGG 2 cut(s) 765, 835
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 3 cut(s) 181, 445, 446
BmiI GGNNCC 7 cut(s) 140, 183, 207, 229, 249, 447, 1047
BmrFI CCNGG 2 cut(s) 765, 835
BmsI GCATC 2 cut(s) 15, 45
BmtI GCTAGC 1 cut(s) 1280
BpiI GAAGAC 1 cut(s) 1239
BpmI CTGGAG 1 cut(s) 738
Bpu10I CCTNAGC 2 cut(s) 903, 1271
Bpu1102I GCTNAGC 1 cut(s) 875
Bpu14I TTCGAA 1 cut(s) 255
BpuEI CTTGAG 2 cut(s) 564, 1327
BsaJI CCNNGG 5 cut(s) 32, 81, 231, 764, 833
BsaXI ACNNNNNCTCC 2 cut(s) 853, 883
Bsc4I CCNNNNNNNGG 1 cut(s) 1079
Bse1I ACTGG 4 cut(s) 237, 432, 469, 728
Bse3DI GCAATG 4 cut(s) 315, 1138, 1287, 1321
BseBI CCWGG 2 cut(s) 765, 835
BseDI CCNNGG 5 cut(s) 32, 81, 231, 764, 833
BseGI GGATG 2 cut(s) 1046, 1109
BseLI CCNNNNNNNGG 1 cut(s) 1079
BseMI GCAATG 4 cut(s) 315, 1138, 1287, 1321
BseMII CTCAG 5 cut(s) 426, 866, 917, 958, 1262
BseNI ACTGG 4 cut(s) 237, 432, 469, 728
BseSI GKGCMC 2 cut(s) 449, 1050
BseXI GCAGC 7 cut(s) 343, 412, 568, 1198, 1315, 1318, 1341
BsgI GTGCAG 1 cut(s) 1340
BshFI GGCC 4 cut(s) 48, 86, 236, 447
BshNI GGYRCC 2 cut(s) 247, 1045
BsiHKAI GWGCWC 1 cut(s) 1305
BsiSI CCGG 2 cut(s) 221, 332
BslFI GGGAC 2 cut(s) 167, 954
BslI CCNNNNNNNGG 1 cut(s) 1079
BsmAI GTCTC 3 cut(s) 109, 684, 1128
BsmFI GGGAC 2 cut(s) 167, 954
BsmI GAATGC 1 cut(s) 1186
BsnI GGCC 4 cut(s) 48, 86, 236, 447
Bsp119I TTCGAA 1 cut(s) 255
Bsp120I GGGCCC 1 cut(s) 445
Bsp1286I GDGCHC 4 cut(s) 449, 1050, 1088, 1305
Bsp1407I TGTACA 1 cut(s) 705
Bsp143I GATC 7 cut(s) 205, 286, 322, 636, 757, 1168, 1345
Bsp1720I GCTNAGC 1 cut(s) 875
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 4 cut(s) 48, 86, 236, 447
BspCNI CTCAG 5 cut(s) 425, 867, 916, 957, 1263
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 7 cut(s) 140, 183, 207, 229, 249, 447, 1047
BspMAI CTGCAG 1 cut(s) 1336
BspOI GCTAGC 1 cut(s) 1280
BspPI GGATC 2 cut(s) 200, 213
BspT104I TTCGAA 1 cut(s) 255
BspT107I GGYRCC 2 cut(s) 247, 1045
BsrDI GCAATG 4 cut(s) 315, 1138, 1287, 1321
BsrGI TGTACA 1 cut(s) 705
BsrI ACTGG 4 cut(s) 237, 432, 469, 728
BssECI CCNNGG 5 cut(s) 32, 81, 231, 764, 833
BssMI GATC 7 cut(s) 205, 286, 322, 636, 757, 1168, 1345
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 2 cut(s) 32, 81
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 2 cut(s) 765, 835
Bst4CI ACNGT 1 cut(s) 968
Bst6I CTCTTC 2 cut(s) 378, 1284
BstAUI TGTACA 1 cut(s) 705
BstBI TTCGAA 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 1278
BstDEI CTNAG 5 cut(s) 412, 875, 903, 944, 1271
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 1046, 1109
BstHHI GCGC 1 cut(s) 1069
BstKTI GATC 7 cut(s) 208, 289, 325, 639, 760, 1171, 1348
BstMAI GTCTC 3 cut(s) 109, 684, 1128
BstMBI GATC 7 cut(s) 205, 286, 322, 636, 757, 1168, 1345
BstMWI GCNNNNNNNGC 4 cut(s) 353, 823, 1135, 1325
BstNI CCWGG 2 cut(s) 765, 835
BstSCI CCNGG 2 cut(s) 763, 833
BstSFI CTRYAG 1 cut(s) 1332
BstSLI GKGCMC 2 cut(s) 449, 1050
BstV1I GCAGC 7 cut(s) 343, 412, 568, 1198, 1315, 1318, 1341
BstV2I GAAGAC 1 cut(s) 1239
BstX2I RGATCY 1 cut(s) 205
BstXI CCANNNNNNTGG 2 cut(s) 82, 522
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 4 cut(s) 48, 86, 236, 447
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 2 cut(s) 1046, 1109
BtsI GCAGTG 1 cut(s) 682
BtsIMutI CAGTG 6 cut(s) 427, 439, 462, 682, 735, 973
Cac8I GCNNGC 1 cut(s) 1278
CciI TCATGA 1 cut(s) 892
CfoI GCGC 1 cut(s) 1069
Cfr13I GGNCC 3 cut(s) 181, 445, 446
Csp6I GTAC 5 cut(s) 248, 603, 669, 706, 1165
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CviAII CATG 6 cut(s) 33, 101, 442, 560, 893, 1162
CviQI GTAC 5 cut(s) 248, 603, 669, 706, 1165
DdeI CTNAG 5 cut(s) 412, 875, 903, 944, 1271
DpnI GATC 7 cut(s) 207, 288, 324, 638, 759, 1170, 1347
DpnII GATC 7 cut(s) 205, 286, 322, 636, 757, 1168, 1345
EaeI YGGCCR 2 cut(s) 46, 84
Eam1104I CTCTTC 2 cut(s) 378, 1284
EarI CTCTTC 2 cut(s) 378, 1284
Eco130I CCWWGG 2 cut(s) 32, 81
Eco24I GRGCYC 2 cut(s) 449, 1088
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 978
EcoRII CCWGG 2 cut(s) 763, 833
EcoT14I CCWWGG 2 cut(s) 32, 81
EcoT38I GRGCYC 2 cut(s) 449, 1088
ErhI CCWWGG 2 cut(s) 32, 81
FaeI CATG 6 cut(s) 36, 104, 445, 563, 896, 1165
FaqI GGGAC 2 cut(s) 167, 954
FatI CATG 6 cut(s) 32, 100, 441, 559, 892, 1161
Fnu4HI GCNGC 7 cut(s) 357, 426, 557, 1212, 1329, 1332, 1355
FokI GGATG 2 cut(s) 1053, 1116
FriOI GRGCYC 2 cut(s) 449, 1088
Fsp4HI GCNGC 7 cut(s) 357, 426, 557, 1212, 1329, 1332, 1355
FspBI CTAG 1 cut(s) 1277
GlaI GCGC 1 cut(s) 1068
GluI GCNGC 7 cut(s) 357, 426, 557, 1212, 1329, 1332, 1355
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 4 cut(s) 48, 86, 236, 447
HapII CCGG 2 cut(s) 221, 332
HhaI GCGC 1 cut(s) 1069
Hin1II CATG 6 cut(s) 36, 104, 445, 563, 896, 1165
Hin6I GCGC 1 cut(s) 1067
HinP1I GCGC 1 cut(s) 1067
HincII GTYRAC 1 cut(s) 1006
HindII GTYRAC 1 cut(s) 1006
HindIII AAGCTT 1 cut(s) 502
HinfI GANTC 3 cut(s) 733, 942, 1121
HpaII CCGG 2 cut(s) 221, 332
HphI GGTGA 2 cut(s) 144, 486
Hpy166II GTNNAC 2 cut(s) 706, 1006
Hpy188I TCNGA 4 cut(s) 796, 922, 947, 1018
Hpy188III TCNNGA 4 cut(s) 209, 755, 893, 1101
Hpy8I GTNNAC 2 cut(s) 706, 1006
HpyCH4III ACNGT 1 cut(s) 968
HpyCH4IV ACGT 1 cut(s) 620
HpyF10VI GCNNNNNNNGC 4 cut(s) 353, 823, 1135, 1325
HpyF3I CTNAG 5 cut(s) 412, 875, 903, 944, 1271
HpySE526I ACGT 1 cut(s) 620
Hsp92II CATG 6 cut(s) 36, 104, 445, 563, 896, 1165
HspAI GCGC 1 cut(s) 1067
KpnI GGTACC 1 cut(s) 251
Kzo9I GATC 7 cut(s) 205, 286, 322, 636, 757, 1168, 1345
LmnI GCTCC 3 cut(s) 144, 227, 913
Lsp1109I GCAGC 7 cut(s) 343, 412, 568, 1198, 1315, 1318, 1341
LweI GCATC 2 cut(s) 15, 45
MaeI CTAG 1 cut(s) 1277
MaeII ACGT 1 cut(s) 620
MaeIII GTNAC 2 cut(s) 526, 1152
MalI GATC 7 cut(s) 207, 288, 324, 638, 759, 1170, 1347
MboI GATC 7 cut(s) 205, 286, 322, 636, 757, 1168, 1345
MboII GAAGA 5 cut(s) 281, 284, 395, 1244, 1301
MfeI CAATTG 2 cut(s) 840, 1077
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 4 cut(s) 449, 1050, 1088, 1305
MlsI TGGCCA 2 cut(s) 48, 86
MluNI TGGCCA 2 cut(s) 48, 86
MlyI GAGTC 2 cut(s) 936, 1130
MmeI TCCRAC 1 cut(s) 891
MnlI CCTC 9 cut(s) 207, 226, 238, 588, 762, 1246, 1266, 1285, 1314
Mox20I TGGCCA 2 cut(s) 48, 86
MroXI GAANNNNTTC 1 cut(s) 888
MscI TGGCCA 2 cut(s) 48, 86
MseI TTAA 3 cut(s) 717, 1395, 1414
MslI CAYNNNNRTG 3 cut(s) 520, 572, 743
Msp20I TGGCCA 2 cut(s) 48, 86
MspI CCGG 2 cut(s) 221, 332
MspR9I CCNGG 2 cut(s) 765, 835
MunI CAATTG 2 cut(s) 840, 1077
Mva1269I GAATGC 1 cut(s) 1186
MvaI CCWGG 2 cut(s) 765, 835
MwoI GCNNNNNNNGC 4 cut(s) 353, 823, 1135, 1325
NcoI CCATGG 1 cut(s) 32
NdeII GATC 7 cut(s) 205, 286, 322, 636, 757, 1168, 1345
NheI GCTAGC 1 cut(s) 1276
NlaIII CATG 6 cut(s) 36, 104, 445, 563, 896, 1165
NlaIV GGNNCC 7 cut(s) 140, 183, 207, 229, 249, 447, 1047
NmeAIII GCCGAG 2 cut(s) 256, 658
NmuCI GTSAC 1 cut(s) 526
NspV TTCGAA 1 cut(s) 255
PagI TCATGA 1 cut(s) 892
PcsI WCGNNNNNNNCGW 2 cut(s) 261, 378
PctI GAATGC 1 cut(s) 1186
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 1 cut(s) 733
PflMI CCANNNNNTGG 1 cut(s) 1079
PkrI GCNGC 7 cut(s) 358, 427, 558, 1213, 1330, 1333, 1356
PleI GAGTC 2 cut(s) 936, 1129
PpsI GAGTC 2 cut(s) 936, 1129
PshBI ATTAAT 1 cut(s) 717
Psp6I CCWGG 2 cut(s) 763, 833
PspGI CCWGG 2 cut(s) 763, 833
PspN4I GGNNCC 7 cut(s) 140, 183, 207, 229, 249, 447, 1047
PspOMI GGGCCC 1 cut(s) 445
PspPI GGNCC 3 cut(s) 181, 445, 446
PstI CTGCAG 1 cut(s) 1336
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 5 cut(s) 249, 604, 670, 707, 1166
RsaNI GTAC 5 cut(s) 248, 603, 669, 706, 1165
RseI CAYNNNNRTG 3 cut(s) 520, 572, 743
SaqAI TTAA 3 cut(s) 717, 1395, 1414
SatI GCNGC 7 cut(s) 357, 426, 557, 1212, 1329, 1332, 1355
Sau3AI GATC 7 cut(s) 205, 286, 322, 636, 757, 1168, 1345
Sau96I GGNCC 3 cut(s) 181, 445, 446
SchI GAGTC 2 cut(s) 936, 1130
ScrFI CCNGG 2 cut(s) 765, 835
SduI GDGCHC 4 cut(s) 449, 1050, 1088, 1305
SfaNI GCATC 2 cut(s) 15, 45
SfcI CTRYAG 1 cut(s) 1332
SfuI TTCGAA 1 cut(s) 255
SinI GGWCC 1 cut(s) 181
SmiMI CAYNNNNRTG 3 cut(s) 520, 572, 743
SmlI CTYRAG 2 cut(s) 579, 1306
SmoI CTYRAG 2 cut(s) 579, 1306
SspMI CTAG 1 cut(s) 1277
StyD4I CCNGG 2 cut(s) 763, 833
StyI CCWWGG 2 cut(s) 32, 81
TaaI ACNGT 1 cut(s) 968
TaiI ACGT 1 cut(s) 623
TaqI TCGA 4 cut(s) 16, 243, 255, 372
TatI WGTACW 2 cut(s) 602, 705
TfiI GAWTC 1 cut(s) 733
Tru1I TTAA 3 cut(s) 717, 1395, 1414
Tru9I TTAA 3 cut(s) 717, 1395, 1414
TscAI CASTG 6 cut(s) 427, 439, 469, 682, 735, 973
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 7 cut(s) 356, 425, 556, 1211, 1328, 1331, 1354
Tsp45I GTSAC 1 cut(s) 526
TspRI CASTG 6 cut(s) 427, 439, 469, 682, 735, 973
Van91I CCANNNNNTGG 1 cut(s) 1079
VpaK11BI GGWCC 1 cut(s) 181
VspI ATTAAT 1 cut(s) 717
XapI RAATTY 1 cut(s) 1059
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 1 cut(s) 1277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.