FvH4_7g15610

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000733
Physical Location & Seq
Forward (+)
13473023 .. 13474332
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15610.t1

Sequence Viewer

Length: 1239 bp
ATGGAAAAAGAGCTGTTTCATGTTGTGATGCTTCCATGGTCTGCCTTCGGCCATTTGATGCCCTTCTTTCAACTCTCCATAGCCTTGGCCAAAGCCAAAGTTCATGTCTCCTTCATATCCACACCGAGAAACATTCAAAGGCTCCCCAAAATCTCACCTGATTTACAACCTTTCATACACTTGGTCCCCATTCCATTTCCTCCATTGGATCCCGACTTCTTGCCGGAAGGAGCAGAGGCCAGTGTAGACGTACCCTCTGAAAAAATCGTCAACTTAATGATCGCATACGATCTTCTTCAAACACCCATCAAGCAGTTCATTGCAAATCAAATGCCGGATTGGATAGTACCCGATTTCGCTGCTCATTGGGTGGTCGACATTGCTAAAGAGTATGCCGTTCCATTAGTATACTTCTCTCCTTTCTCCGCAGCTAGCAGTGTATTCTTTGGCCCCCCTGAAAATCTCTCCGGTGTGAATAGAAACTATGCTCTTCCATCACCAAAAAGCTTGACATCTCCACCAGACTGGATCACCTTTCCTTCGTTGGTGGCGTTCAAGGAGCTTGCCAAGATAATATCAGCAAGCCAAGCTTTGGCACTTCGTACTTGTAATGAGATTGAAGGAGACTACTTGGAAGTGTACAAGAAAATCACTGGAAAGCCAGTGATTCCCACTGGTGTACTTCCTCCAGATCAAGCTAGGAAAAGGGCAAAAGGGGAAATAAACTCCGATGTGCCAATGCTTCATTGGCTTGACAAGCAAAAACCTAGGTCAGTGGTGTTTGTGGGGTTTGGGAGTGAGTGTAAGCTGAGCAAAGAACAAGTTCATGAGATAGCTCATGGGTTGGAGCTTTCAGATTTGCCATTTATTTGGGGACTCAGAAAACCCAATTCAGCTAACAGTGATCAAGTCGATGATTTTCTGCCTTTAGGTTTTGTTGACAGAACATCTGAGAAAGGGCTTGTTTGCTTCGGATGGGTGCCTCAAATGGAAATTTTGGGGCACCCATCAATTGGGGGCTCTTTGTTTCATTCTGGATGGGGTTCTGTGATTGAGACTCTGCAATTTGGGCATTGCCTTGTTGTGTTACCCTTCATTATTGATCAGCCTTTGAACGCAAGGTTTTTGGTAGAGAAGGGTCTGGCTGCCGAAGTGAAGCACAACGAAGATGGGTCGCTTAGTAGAGAGGAAATAGCAAAATCACTGAGGCTAGCAATGGTGGAAGAAGAAGGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

413

Amino Acids

45.76

Weight (kDa)

5.51

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 256 - 402 1.1e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 979, 1002
AccB7I CCANNNNNTGG 2 cut(s) 592, 1013
AccI GTMKAC 3 cut(s) 246, 375, 408
AciI CCGC 1 cut(s) 426
AclWI GGATC 3 cut(s) 203, 216, 536
AcoI YGGCCR 2 cut(s) 49, 87
AcsI RAATTY 1 cut(s) 993
AfaI GTAC 5 cut(s) 252, 348, 604, 641, 681
AfiI CCNNNNNNNGG 2 cut(s) 592, 1013
AgsI TTSAA 6 cut(s) 71, 137, 299, 556, 620, 1114
Alw26I GTCTC 3 cut(s) 112, 618, 1049
AlwI GGATC 3 cut(s) 203, 216, 536
AoxI GGCC 4 cut(s) 49, 87, 237, 448
ApeKI GCWGC 3 cut(s) 359, 428, 1145
ApoI RAATTY 1 cut(s) 993
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
Asp700I GAANNNNTTC 1 cut(s) 822
AspA2I CCTAGG 1 cut(s) 767
AspS9I GGNCC 2 cut(s) 184, 449
AsuHPI GGTGA 3 cut(s) 147, 489, 523
AsuNHI GCTAGC 2 cut(s) 431, 1210
AvaII GGWCC 1 cut(s) 184
AvrII CCTAGG 1 cut(s) 767
BaeGI GKGCMC 1 cut(s) 1005
BalI TGGCCA 1 cut(s) 89
BamHI GGATCC 1 cut(s) 208
BanI GGYRCC 2 cut(s) 979, 1002
BanII GRGCYC 1 cut(s) 1022
BbvI GCAGC 3 cut(s) 346, 440, 1132
BccI CCATC 6 cut(s) 314, 502, 969, 1015, 1032, 1163
BceAI ACGGC 1 cut(s) 380
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BclI TGATCA 2 cut(s) 904, 1102
BcoDI GTCTC 3 cut(s) 112, 618, 1049
BfaI CTAG 4 cut(s) 432, 699, 768, 1211
BisI GCNGC 3 cut(s) 360, 429, 1146
BlnI CCTAGG 1 cut(s) 767
BlpI GCTNAGC 1 cut(s) 809
BlsI GCNGC 3 cut(s) 361, 430, 1147
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 184, 449
BmiI GGNNCC 6 cut(s) 143, 186, 210, 451, 981, 1004
BmsI GCATC 2 cut(s) 18, 48
BmtI GCTAGC 2 cut(s) 435, 1214
BpmI CTGGAG 1 cut(s) 672
Bpu1102I GCTNAGC 1 cut(s) 809
BsaJI CCNNGG 3 cut(s) 35, 84, 767
BsaWI WCCGGW 1 cut(s) 467
BsaXI ACNNNNNCTCC 2 cut(s) 787, 817
Bsc4I CCNNNNNNNGG 2 cut(s) 592, 1013
Bse1I ACTGG 5 cut(s) 240, 530, 658, 662, 679
Bse3DI GCAATG 4 cut(s) 318, 378, 1072, 1221
BseDI CCNNGG 3 cut(s) 35, 84, 767
BseGI GGATG 2 cut(s) 980, 1043
BseLI CCNNNNNNNGG 2 cut(s) 592, 1013
BseMI GCAATG 4 cut(s) 318, 378, 1072, 1221
BseMII CTCAG 4 cut(s) 800, 892, 942, 1196
BseNI ACTGG 5 cut(s) 240, 530, 658, 662, 679
BseSI GKGCMC 1 cut(s) 1005
BseXI GCAGC 3 cut(s) 346, 440, 1132
BshFI GGCC 4 cut(s) 51, 89, 239, 450
BshNI GGYRCC 2 cut(s) 979, 1002
BsiSI CCGG 3 cut(s) 224, 335, 468
BslFI GGGAC 2 cut(s) 170, 888
BslI CCNNNNNNNGG 2 cut(s) 592, 1013
BsmAI GTCTC 3 cut(s) 112, 618, 1049
BsmFI GGGAC 2 cut(s) 170, 888
BsnI GGCC 4 cut(s) 51, 89, 239, 450
Bsp1286I GDGCHC 2 cut(s) 1005, 1022
Bsp1407I TGTACA 1 cut(s) 639
Bsp143I GATC 7 cut(s) 208, 279, 289, 528, 691, 904, 1102
Bsp1720I GCTNAGC 1 cut(s) 809
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 1 cut(s) 426
BspANI GGCC 4 cut(s) 51, 89, 239, 450
BspCNI CTCAG 4 cut(s) 801, 891, 943, 1197
BspHI TCATGA 1 cut(s) 826
BspLI GGNNCC 6 cut(s) 143, 186, 210, 451, 981, 1004
BspOI GCTAGC 2 cut(s) 435, 1214
BspPI GGATC 3 cut(s) 203, 216, 536
BspQI GCTCTTC 1 cut(s) 495
BspT107I GGYRCC 2 cut(s) 979, 1002
BsrDI GCAATG 4 cut(s) 318, 378, 1072, 1221
BsrGI TGTACA 1 cut(s) 639
BsrI ACTGG 5 cut(s) 240, 530, 658, 662, 679
BssECI CCNNGG 3 cut(s) 35, 84, 767
BssMI GATC 7 cut(s) 208, 279, 289, 528, 691, 904, 1102
BssNAI GTATAC 1 cut(s) 409
BssT1I CCWWGG 3 cut(s) 35, 84, 767
Bst1107I GTATAC 1 cut(s) 409
Bst4CI ACNGT 1 cut(s) 902
Bst6I CTCTTC 1 cut(s) 495
BstAUI TGTACA 1 cut(s) 639
BstC8I GCNNGC 4 cut(s) 433, 564, 583, 1212
BstDEI CTNAG 5 cut(s) 809, 878, 951, 1178, 1205
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 980, 1043
BstKTI GATC 7 cut(s) 211, 282, 292, 531, 694, 907, 1105
BstMAI GTCTC 3 cut(s) 112, 618, 1049
BstMBI GATC 7 cut(s) 208, 279, 289, 528, 691, 904, 1102
BstMWI GCNNNNNNNGC 4 cut(s) 587, 748, 757, 1069
BstSLI GKGCMC 1 cut(s) 1005
BstV1I GCAGC 3 cut(s) 346, 440, 1132
BstX2I RGATCY 1 cut(s) 208
BstXI CCANNNNNNTGG 3 cut(s) 85, 525, 870
BstYI RGATCY 1 cut(s) 208
BstZ17I GTATAC 1 cut(s) 409
BsuRI GGCC 4 cut(s) 51, 89, 239, 450
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 2 cut(s) 980, 1043
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 8 cut(s) 247, 442, 651, 669, 672, 780, 907, 1202
Cac8I GCNNGC 4 cut(s) 433, 564, 583, 1212
CciI TCATGA 1 cut(s) 826
Cfr13I GGNCC 2 cut(s) 184, 449
Csp6I GTAC 5 cut(s) 251, 347, 603, 640, 680
CviAII CATG 5 cut(s) 20, 36, 104, 827, 839
CviQI GTAC 5 cut(s) 251, 347, 603, 640, 680
DdeI CTNAG 5 cut(s) 809, 878, 951, 1178, 1205
DpnI GATC 7 cut(s) 210, 281, 291, 530, 693, 906, 1104
DpnII GATC 7 cut(s) 208, 279, 289, 528, 691, 904, 1102
EaeI YGGCCR 2 cut(s) 49, 87
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Eco130I CCWWGG 3 cut(s) 35, 84, 767
Eco24I GRGCYC 1 cut(s) 1022
Eco47I GGWCC 1 cut(s) 184
EcoT14I CCWWGG 3 cut(s) 35, 84, 767
EcoT38I GRGCYC 1 cut(s) 1022
ErhI CCWWGG 3 cut(s) 35, 84, 767
FaeI CATG 5 cut(s) 23, 39, 107, 830, 842
FalI AAGNNNNNCTT 2 cut(s) 574, 606
FaqI GGGAC 2 cut(s) 170, 888
FatI CATG 5 cut(s) 19, 35, 103, 826, 838
FbaI TGATCA 2 cut(s) 904, 1102
FblI GTMKAC 3 cut(s) 246, 375, 408
Fnu4HI GCNGC 3 cut(s) 360, 429, 1146
FokI GGATG 2 cut(s) 987, 1050
FriOI GRGCYC 1 cut(s) 1022
Fsp4HI GCNGC 3 cut(s) 360, 429, 1146
FspBI CTAG 4 cut(s) 432, 699, 768, 1211
GluI GCNGC 3 cut(s) 360, 429, 1146
GsuI CTGGAG 1 cut(s) 672
HaeIII GGCC 4 cut(s) 51, 89, 239, 450
HapII CCGG 3 cut(s) 224, 335, 468
Hin1II CATG 5 cut(s) 23, 39, 107, 830, 842
HincII GTYRAC 3 cut(s) 271, 376, 940
HindII GTYRAC 3 cut(s) 271, 376, 940
HindIII AAGCTT 2 cut(s) 505, 588
HinfI GANTC 3 cut(s) 667, 876, 1057
HpaII CCGG 3 cut(s) 224, 335, 468
HphI GGTGA 3 cut(s) 147, 489, 523
Hpy166II GTNNAC 7 cut(s) 247, 271, 376, 409, 640, 680, 940
Hpy188I TCNGA 6 cut(s) 259, 730, 856, 881, 952, 974
Hpy188III TCNNGA 4 cut(s) 212, 689, 827, 1035
Hpy8I GTNNAC 7 cut(s) 247, 271, 376, 409, 640, 680, 940
HpyAV CCTTC 9 cut(s) 55, 73, 121, 221, 549, 614, 1102, 1129, 1223
HpyCH4III ACNGT 1 cut(s) 902
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 2 cut(s) 323, 1063
HpyF10VI GCNNNNNNNGC 4 cut(s) 587, 748, 757, 1069
HpyF3I CTNAG 5 cut(s) 809, 878, 951, 1178, 1205
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 5 cut(s) 23, 39, 107, 830, 842
Ksp22I TGATCA 2 cut(s) 904, 1102
Kzo9I GATC 7 cut(s) 208, 279, 289, 528, 691, 904, 1102
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 4 cut(s) 147, 230, 559, 847
Lsp1109I GCAGC 3 cut(s) 346, 440, 1132
LweI GCATC 2 cut(s) 18, 48
MaeI CTAG 4 cut(s) 432, 699, 768, 1211
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 1086
MalI GATC 7 cut(s) 210, 281, 291, 530, 693, 906, 1104
MboI GATC 7 cut(s) 208, 279, 289, 528, 691, 904, 1102
MboII GAAGA 6 cut(s) 284, 287, 482, 1178, 1235, 1238
MfeI CAATTG 1 cut(s) 1011
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 2 cut(s) 1005, 1022
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 4 cut(s) 889, 993, 1011, 1064
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 2 cut(s) 870, 1051
MmeI TCCRAC 1 cut(s) 825
MnlI CCTC 7 cut(s) 210, 229, 265, 696, 993, 1180, 1200
Mox20I TGGCCA 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 822
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 89
MspI CCGG 3 cut(s) 224, 335, 468
MunI CAATTG 1 cut(s) 1011
MwoI GCNNNNNNNGC 4 cut(s) 587, 748, 757, 1069
NcoI CCATGG 1 cut(s) 35
NdeII GATC 7 cut(s) 208, 279, 289, 528, 691, 904, 1102
NheI GCTAGC 2 cut(s) 431, 1210
NlaIII CATG 5 cut(s) 23, 39, 107, 830, 842
NlaIV GGNNCC 6 cut(s) 143, 186, 210, 451, 981, 1004
PagI TCATGA 1 cut(s) 826
PciSI GCTCTTC 1 cut(s) 495
PcsI WCGNNNNNNNCGW 1 cut(s) 548
PdmI GAANNNNTTC 1 cut(s) 822
PfeI GAWTC 1 cut(s) 667
PflMI CCANNNNNTGG 2 cut(s) 592, 1013
PkrI GCNGC 3 cut(s) 361, 430, 1147
PleI GAGTC 2 cut(s) 870, 1051
PpsI GAGTC 2 cut(s) 870, 1051
PspN4I GGNNCC 6 cut(s) 143, 186, 210, 451, 981, 1004
PspPI GGNCC 2 cut(s) 184, 449
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 5 cut(s) 252, 348, 604, 641, 681
RsaNI GTAC 5 cut(s) 251, 347, 603, 640, 680
SalI GTCGAC 1 cut(s) 374
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 3 cut(s) 360, 429, 1146
Sau3AI GATC 7 cut(s) 208, 279, 289, 528, 691, 904, 1102
Sau96I GGNCC 2 cut(s) 184, 449
SchI GAGTC 2 cut(s) 870, 1051
SduI GDGCHC 2 cut(s) 1005, 1022
SfaNI GCATC 2 cut(s) 18, 48
SinI GGWCC 1 cut(s) 184
Sse9I AATT 4 cut(s) 889, 993, 1011, 1064
SsiI CCGC 1 cut(s) 426
SspMI CTAG 4 cut(s) 432, 699, 768, 1211
StyI CCWWGG 3 cut(s) 35, 84, 767
TaaI ACNGT 1 cut(s) 902
TaiI ACGT 1 cut(s) 252
TaqI TCGA 2 cut(s) 375, 912
TasI AATT 4 cut(s) 889, 993, 1011, 1064
TatI WGTACW 2 cut(s) 639, 679
TfiI GAWTC 1 cut(s) 667
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 8 cut(s) 247, 442, 658, 669, 679, 780, 907, 1209
TseI GCWGC 3 cut(s) 359, 428, 1145
TspDTI ATGAA 9 cut(s) 8, 92, 103, 163, 307, 734, 815, 1019, 1084
TspRI CASTG 8 cut(s) 247, 442, 658, 669, 679, 780, 907, 1209
Van91I CCANNNNNTGG 2 cut(s) 592, 1013
VpaK11BI GGWCC 1 cut(s) 184
XapI RAATTY 1 cut(s) 993
XcmI CCANNNNNNNNNTGG 1 cut(s) 744
XmaJI CCTAGG 1 cut(s) 767
XmiI GTMKAC 3 cut(s) 246, 375, 408
XmnI GAANNNNTTC 1 cut(s) 822
XspI CTAG 4 cut(s) 432, 699, 768, 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.