MD01G1068700.v1.1

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000733
Physical Location & Seq
Forward (+)
17278370 .. 17279867
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1068700.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGGAAAAAGATGATCATCTTAGCGTTGTGATGCTGCCATGGTCTGCCTTTGGCCACATGATGCCTTTTTTCCAACTTTCAATAGCTTTAGCAAAAGCAAAAGTTCATGTCTCCTTCATATCCACACCAAAAAACATCCAAAGACTCCCCAAAATCTTACCAGATTTGCAACCCTTTGTGCAATTAGTCCCCATTCCATTTCCACCGTTGGATCCCGACTTATTGCCGGAAGGAGCTGAGGCCTCGGTGGACCTCCCCTTTGAAAATACTGACAACTTGAAGATTGCATACGACCTCCTGCAAACACCCATCAAGCAGTTCATTGGGGATCGATTGCCTGATTGGATCATAACCGACTTTGCTGCTCATTGGGTCGTAGAGATTGGCAAAGAGTACGGCGTTCCACTTGTCTATTTTACTGTTGTCTCTGCTGCTACAGTTGTCGTTTTTAGTTCAGCTGAAAATCCCTCCAGTGGTAATACAGATGATACTCTGCCATCGCCGGAAAGCCTTACTTCGCCGCCGGATCTGGTTACTTCTCAGTCAACGGTCGCATACCGAGAGCACGAGGCGGTCGATATGCACGAGGGCCTTTACGGAGTGAATGATTCCGGCATAAGTGATGCCGAAAGGCACGCCAAGATTCTATCAGCTTGTCGAGTTTTCGCCATTCGGAGTTGCTATGAGTTTGAAGGAGAGTACTTGGAGGCATACAAGAACAGGTCTGGGAAGCTTGTGATTCCCACTGGTTTGCTTCCTCCTGAGATACCTGCAAAAGGGGTAAAAGGAGAAATTTCCACTGATGATGGGATCTTTGAATGGCTCGATAAGCAAAAAACCAGGTCAGTTGTGTTTCCTCTGAATGCAAGGCTTTTGGAGGAGAAGGGTATGGCTGTCGAAGTGAAACGACGCGGAGATGGGTCGTTTAGTAGAGATGACATAGCCAAAACACTCCGGCACGCGATGGTGGAGGAGGAAGGAGAGCGGCTGAGATCCAATGCTAGGAAAGCTGCAACTGTTTTTGGAGATCACAAGCTGCACCAAGACCACTACATTGGCAAGTTTGTCAACTTTCTTAAAAACAACACTACAAAAAGGTCATCCGGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

371

Amino Acids

41.15

Weight (kDa)

5.52

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 778
AccBSI CCGCTC 1 cut(s) 985
AccII CGCG 2 cut(s) 912, 962
AciI CCGC 4 cut(s) 521, 572, 912, 985
AclWI GGATC 7 cut(s) 206, 219, 336, 353, 534, 818, 987
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 1 cut(s) 792
AfaI GTAC 2 cut(s) 395, 701
AfiI CCNNNNNNNGG 3 cut(s) 473, 776, 1002
AgsI TTSAA 5 cut(s) 81, 263, 280, 692, 818
AjnI CCWGG 1 cut(s) 839
AluBI AGCT 7 cut(s) 86, 236, 458, 653, 733, 1010, 1036
AluI AGCT 7 cut(s) 86, 236, 458, 653, 733, 1010, 1036
Alw21I GWGCWC 1 cut(s) 567
Alw26I GTCTC 2 cut(s) 115, 430
AlwI GGATC 7 cut(s) 206, 219, 336, 353, 534, 818, 987
AoxI GGCC 3 cut(s) 52, 240, 589
ApeKI GCWGC 5 cut(s) 34, 362, 431, 1010, 1036
ApoI RAATTY 1 cut(s) 792
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AspS9I GGNCC 2 cut(s) 250, 589
AvaII GGWCC 1 cut(s) 250
BalI TGGCCA 1 cut(s) 54
BamHI GGATCC 1 cut(s) 211
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BauI CACGAG 2 cut(s) 566, 584
Bbv12I GWGCWC 1 cut(s) 567
BbvCI CCTCAGC 1 cut(s) 237
BbvI GCAGC 5 cut(s) 21, 349, 418, 997, 1023
BccI CCATC 5 cut(s) 317, 505, 800, 911, 958
BceAI ACGGC 1 cut(s) 412
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 841
BclI TGATCA 1 cut(s) 13
BcoDI GTCTC 2 cut(s) 115, 430
BfaI CTAG 1 cut(s) 1002
BfmI CTRYAG 1 cut(s) 435
BfuAI ACCTGC 1 cut(s) 778
BisI GCNGC 7 cut(s) 35, 363, 432, 521, 986, 1011, 1037
BlsI GCNGC 7 cut(s) 36, 364, 433, 522, 987, 1012, 1038
BmcAI AGTACT 1 cut(s) 701
Bme1390I CCNGG 1 cut(s) 841
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 2 cut(s) 250, 589
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 841
BmsI GCATC 3 cut(s) 21, 51, 613
BpmI CTGGAG 1 cut(s) 454
Bpu10I CCTNAGC 1 cut(s) 237
Bsa29I ATCGAT 1 cut(s) 331
BsaBI GATNNNNATC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 38, 243
BsaWI WCCGGW 1 cut(s) 1103
Bsc4I CCNNNNNNNGG 3 cut(s) 473, 776, 1002
Bse1I ACTGG 2 cut(s) 471, 751
Bse8I GATNNNNATC 1 cut(s) 15
BseBI CCWGG 1 cut(s) 841
BseCI ATCGAT 1 cut(s) 331
BseDI CCNNGG 2 cut(s) 38, 243
BseGI GGATG 2 cut(s) 135, 1100
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 3 cut(s) 473, 776, 1002
BseMII CTCAG 4 cut(s) 228, 554, 753, 980
BseNI ACTGG 2 cut(s) 471, 751
BseRI GAGGAG 2 cut(s) 893, 986
BseXI GCAGC 5 cut(s) 21, 349, 418, 997, 1023
BsgI GTGCAG 1 cut(s) 1022
Bsh1236I CGCG 2 cut(s) 912, 962
Bsh1285I CGRYCG 2 cut(s) 552, 576
BshFI GGCC 3 cut(s) 54, 242, 591
BshVI ATCGAT 1 cut(s) 331
BsiEI CGRYCG 2 cut(s) 552, 576
BsiHKAI GWGCWC 1 cut(s) 567
BsiSI CCGG 6 cut(s) 227, 503, 524, 612, 955, 1104
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 3 cut(s) 473, 776, 1002
BsmAI GTCTC 2 cut(s) 115, 430
BsmFI GGGAC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 868
BsnI GGCC 3 cut(s) 54, 242, 591
Bsp1286I GDGCHC 1 cut(s) 567
Bsp143I GATC 8 cut(s) 13, 211, 328, 345, 526, 810, 992, 1027
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 4 cut(s) 521, 572, 912, 985
BspANI GGCC 3 cut(s) 54, 242, 591
BspCNI CTCAG 4 cut(s) 229, 553, 754, 981
BspDI ATCGAT 1 cut(s) 331
BspFNI CGCG 2 cut(s) 912, 962
BspLI GGNNCC 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 778
BspPI GGATC 7 cut(s) 206, 219, 336, 353, 534, 818, 987
BsrBI CCGCTC 1 cut(s) 985
BsrI ACTGG 2 cut(s) 471, 751
BssECI CCNNGG 2 cut(s) 38, 243
BssMI GATC 8 cut(s) 13, 211, 328, 345, 526, 810, 992, 1027
BssSI CACGAG 2 cut(s) 566, 584
BssT1I CCWWGG 1 cut(s) 38
Bst2BI CACGAG 2 cut(s) 566, 584
Bst2UI CCWGG 1 cut(s) 841
Bst4CI ACNGT 5 cut(s) 207, 421, 439, 550, 1018
BstC8I GCNNGC 2 cut(s) 636, 960
BstDEI CTNAG 6 cut(s) 20, 237, 540, 762, 989, 1110
BstDSI CCRYGG 1 cut(s) 38
BstENI CCTNNNNNAGG 1 cut(s) 774
BstF5I GGATG 2 cut(s) 135, 1100
BstFNI CGCG 2 cut(s) 912, 962
BstKTI GATC 8 cut(s) 16, 214, 331, 348, 529, 813, 995, 1030
BstMAI GTCTC 2 cut(s) 115, 430
BstMBI GATC 8 cut(s) 13, 211, 328, 345, 526, 810, 992, 1027
BstMCI CGRYCG 2 cut(s) 552, 576
BstMWI GCNNNNNNNGC 2 cut(s) 829, 1007
BstNI CCWGG 1 cut(s) 841
BstSCI CCNGG 1 cut(s) 839
BstSFI CTRYAG 1 cut(s) 435
BstUI CGCG 2 cut(s) 912, 962
BstV1I GCAGC 5 cut(s) 21, 349, 418, 997, 1023
BstX2I RGATCY 4 cut(s) 211, 526, 810, 992
BstXI CCANNNNNNTGG 1 cut(s) 1055
BstYI RGATCY 4 cut(s) 211, 526, 810, 992
Bsu15I ATCGAT 1 cut(s) 331
BsuRI GGCC 3 cut(s) 54, 242, 591
BsuTUI ATCGAT 1 cut(s) 331
BtgI CCRYGG 1 cut(s) 38
BtgZI GCGATG 2 cut(s) 483, 977
BtsCI GGATG 2 cut(s) 135, 1100
BtsIMutI CAGTG 3 cut(s) 478, 744, 798
BveI ACCTGC 1 cut(s) 778
Cac8I GCNNGC 2 cut(s) 636, 960
Cfr13I GGNCC 2 cut(s) 250, 589
ClaI ATCGAT 1 cut(s) 331
CseI GACGC 1 cut(s) 918
CsiI ACCWGGT 1 cut(s) 839
Csp6I GTAC 2 cut(s) 394, 700
CviAII CATG 3 cut(s) 39, 58, 107
CviQI GTAC 2 cut(s) 394, 700
DdeI CTNAG 6 cut(s) 20, 237, 540, 762, 989, 1110
DpnI GATC 8 cut(s) 15, 213, 330, 347, 528, 812, 994, 1029
DpnII GATC 8 cut(s) 13, 211, 328, 345, 526, 810, 992, 1027
EaeI YGGCCR 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 38
Eco147I AGGCCT 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 250
EcoNI CCTNNNNNAGG 1 cut(s) 774
EcoO109I RGGNCCY 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 839
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 3 cut(s) 42, 61, 110
FalI AAGNNNNNCTT 2 cut(s) 499, 531
FaqI GGGAC 1 cut(s) 173
FatI CATG 3 cut(s) 38, 57, 106
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 7 cut(s) 35, 363, 432, 521, 986, 1011, 1037
FokI GGATG 2 cut(s) 122, 1087
Fsp4HI GCNGC 7 cut(s) 35, 363, 432, 521, 986, 1011, 1037
FspBI CTAG 1 cut(s) 1002
GluI GCNGC 7 cut(s) 35, 363, 432, 521, 986, 1011, 1037
GsuI CTGGAG 1 cut(s) 454
HaeIII GGCC 3 cut(s) 54, 242, 591
HapII CCGG 6 cut(s) 227, 503, 524, 612, 955, 1104
HgaI GACGC 1 cut(s) 918
Hin1II CATG 3 cut(s) 42, 61, 110
HincII GTYRAC 2 cut(s) 546, 1069
HindII GTYRAC 2 cut(s) 546, 1069
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 4 cut(s) 144, 608, 643, 739
HpaII CCGG 6 cut(s) 227, 503, 524, 612, 955, 1104
Hpy166II GTNNAC 3 cut(s) 250, 546, 1069
Hpy188I TCNGA 2 cut(s) 675, 861
Hpy188III TCNNGA 2 cut(s) 215, 761
Hpy8I GTNNAC 3 cut(s) 250, 546, 1069
Hpy99I CGWCG 1 cut(s) 912
HpyAV CCTTC 5 cut(s) 124, 224, 686, 877, 971
HpyCH4III ACNGT 5 cut(s) 207, 421, 439, 550, 1018
HpyCH4V TGCA 9 cut(s) 169, 181, 287, 301, 583, 773, 866, 1013, 1039
HpyF10VI GCNNNNNNNGC 2 cut(s) 829, 1007
HpyF3I CTNAG 6 cut(s) 20, 237, 540, 762, 989, 1110
Hsp92II CATG 3 cut(s) 42, 61, 110
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 8 cut(s) 13, 211, 328, 345, 526, 810, 992, 1027
LmnI GCTCC 1 cut(s) 233
Lsp1109I GCAGC 5 cut(s) 21, 349, 418, 997, 1023
LweI GCATC 3 cut(s) 21, 51, 613
MabI ACCWGGT 1 cut(s) 839
MaeI CTAG 1 cut(s) 1002
MaeIII GTNAC 1 cut(s) 532
MalI GATC 8 cut(s) 15, 213, 330, 347, 528, 812, 994, 1029
MbiI CCGCTC 1 cut(s) 985
MboI GATC 8 cut(s) 13, 211, 328, 345, 526, 810, 992, 1027
MboII GAAGA 1 cut(s) 292
MflI RGATCY 4 cut(s) 211, 526, 810, 992
MhlI GDGCHC 1 cut(s) 567
MlsI TGGCCA 1 cut(s) 54
MluCI AATT 2 cut(s) 182, 792
MluNI TGGCCA 1 cut(s) 54
MlyI GAGTC 1 cut(s) 138
MmeI TCCRAC 2 cut(s) 97, 189
Mox20I TGGCCA 1 cut(s) 54
MscI TGGCCA 1 cut(s) 54
MseI TTAA 1 cut(s) 1077
Msp20I TGGCCA 1 cut(s) 54
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 6 cut(s) 227, 503, 524, 612, 955, 1104
MspR9I CCNGG 1 cut(s) 841
Mva1269I GAATGC 1 cut(s) 868
MvaI CCWGG 1 cut(s) 841
MvnI CGCG 2 cut(s) 912, 962
MwoI GCNNNNNNNGC 2 cut(s) 829, 1007
NcoI CCATGG 1 cut(s) 38
NdeII GATC 8 cut(s) 13, 211, 328, 345, 526, 810, 992, 1027
NlaIII CATG 3 cut(s) 42, 61, 110
NlaIV GGNNCC 1 cut(s) 213
PceI AGGCCT 1 cut(s) 242
PcsI WCGNNNNNNNCGW 2 cut(s) 573, 582
PctI GAATGC 1 cut(s) 868
PfeI GAWTC 3 cut(s) 608, 643, 739
PkrI GCNGC 7 cut(s) 36, 364, 433, 522, 987, 1012, 1038
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 839
PspGI CCWGG 1 cut(s) 839
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 2 cut(s) 250, 589
PsuI RGATCY 4 cut(s) 211, 526, 810, 992
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 2 cut(s) 395, 701
RsaNI GTAC 2 cut(s) 394, 700
SaqAI TTAA 1 cut(s) 1077
SatI GCNGC 7 cut(s) 35, 363, 432, 521, 986, 1011, 1037
Sau3AI GATC 8 cut(s) 13, 211, 328, 345, 526, 810, 992, 1027
Sau96I GGNCC 2 cut(s) 250, 589
ScaI AGTACT 1 cut(s) 701
SchI GAGTC 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 841
SduI GDGCHC 1 cut(s) 567
SexAI ACCWGGT 1 cut(s) 839
SfaNI GCATC 3 cut(s) 21, 51, 613
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 1 cut(s) 250
Sse9I AATT 2 cut(s) 182, 792
SseBI AGGCCT 1 cut(s) 242
SsiI CCGC 4 cut(s) 521, 572, 912, 985
SspMI CTAG 1 cut(s) 1002
StuI AGGCCT 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 839
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 5 cut(s) 207, 421, 439, 550, 1018
TaqI TCGA 5 cut(s) 331, 576, 658, 825, 897
TasI AATT 2 cut(s) 182, 792
TatI WGTACW 1 cut(s) 699
TauI GCSGC 2 cut(s) 523, 988
TfiI GAWTC 3 cut(s) 608, 643, 739
Tru1I TTAA 1 cut(s) 1077
Tru9I TTAA 1 cut(s) 1077
TscAI CASTG 3 cut(s) 478, 751, 805
TseI GCWGC 5 cut(s) 34, 362, 431, 1010, 1036
TspDTI ATGAA 3 cut(s) 95, 106, 310
TspGWI ACGGA 1 cut(s) 612
TspRI CASTG 3 cut(s) 478, 751, 805
VpaK11BI GGWCC 1 cut(s) 250
XagI CCTNNNNNAGG 1 cut(s) 774
XapI RAATTY 1 cut(s) 792
XspI CTAG 1 cut(s) 1002
ZrmI AGTACT 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.