RLG00000028057

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000733
Physical Location & Seq
Reverse (-)
18157849 .. 18159004
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028057

Sequence Viewer

Length: 732 bp
ATGCCGGATTGGATCATAGCCGATTTTACTGCTCATTGGGTGGTTGATATTGCCAAAGAAAACTATGCTCTCCCATCACCAGAAAGCTTGATATCTCCACCAGAGTGGGTTACTTCTCCTTCACAAGTCGCATTTAAAGAATGTGAAGGCATCCATGTGCCTCAAGGGTTTTTTGGGGCAAATAGTACTGGGATTAGTGGTGCTTCAAGGCTTGCCAAGATTGTTTCGGCAAGTCAAGTTTTGGCTATTCGTAGCTGCAATGAGATTGAAGAAGAGTCTCTCCTTCAATCTCAGAGAAAAACCAGAGAAAGGACTGGTTTATTTCGGATGGGTTCCCCAGTCGAAAATTTTGGGCCACCTATCAATTGGGGGTTCTCGTTTCACTCTGGATGGGGTTCTATAATTGAAAACATGCAATTTGGGCATTGCCTTCAATGCCATATTGTGTCACCACCCATCATTGTTGATCAGCCTTTGAATGCAAGGCTCTTGGTGGAGAAGGGGCTGGCTGTTGAAGTAAAATGCAGGGAAGATGGGTCATTTAGTAAAGAGGACATAGCCAAAACACTGAGACATACAATGGTGGAAGAGGAAGGACAACAGCTAAGAACTAATGTAAGGAAAGCTGCAGCAGTTTTTGGAGATCATAAACTGCACCAAGACCACTACGTTGGTGCATTTGTTCATTACCATAAAACTTACTGTCAAACGCCAAAAGTTGAGTCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

244

Amino Acids

27.1

Weight (kDa)

6.12

Isoelectric Point (pI)

57.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 725
AclWI GGATC 1 cut(s) 20
AcsI RAATTY 1 cut(s) 346
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 309
AgsI TTSAA 7 cut(s) 207, 269, 287, 407, 434, 478, 515
AleI CACNNNNGTG 1 cut(s) 103
AluBI AGCT 4 cut(s) 87, 255, 604, 626
AluI AGCT 4 cut(s) 87, 255, 604, 626
Alw26I GTCTC 2 cut(s) 282, 565
AlwI GGATC 1 cut(s) 20
AoxI GGCC 1 cut(s) 353
ApeKI GCWGC 3 cut(s) 255, 626, 629
ApoI RAATTY 1 cut(s) 346
ArsI GACNNNNNNTTYG 1 cut(s) 707
AspS9I GGNCC 1 cut(s) 353
AsuHPI GGTGA 2 cut(s) 69, 441
BbvI GCAGC 3 cut(s) 242, 613, 641
BccI CCATC 5 cut(s) 82, 322, 384, 464, 527
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BclI TGATCA 1 cut(s) 466
BcoDI GTCTC 2 cut(s) 282, 565
BfmI CTRYAG 1 cut(s) 627
BisI GCNGC 3 cut(s) 256, 627, 630
BlsI GCNGC 3 cut(s) 257, 628, 631
BmcAI AGTACT 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 1 cut(s) 334
BmrI ACTGGG 2 cut(s) 198, 332
BmsI GCATC 1 cut(s) 159
BmuI ACTGGG 2 cut(s) 198, 332
BpuEI CTTGAG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse1I ACTGG 3 cut(s) 193, 319, 338
Bse3DI GCAATG 2 cut(s) 265, 424
BseGI GGATG 3 cut(s) 150, 333, 395
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMI GCAATG 2 cut(s) 265, 424
BseMII CTCAG 2 cut(s) 305, 560
BseNI ACTGG 3 cut(s) 193, 319, 338
BseXI GCAGC 3 cut(s) 242, 613, 641
BsgI GTGCAG 1 cut(s) 638
BshFI GGCC 1 cut(s) 355
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 309
BsmAI GTCTC 2 cut(s) 282, 565
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 1 cut(s) 355
Bsp143I GATC 3 cut(s) 12, 466, 643
BspANI GGCC 1 cut(s) 355
BspCNI CTCAG 2 cut(s) 304, 561
BspLI GGNNCC 1 cut(s) 334
BspMAI CTGCAG 1 cut(s) 631
BspPI GGATC 1 cut(s) 20
BsrDI GCAATG 2 cut(s) 265, 424
BsrI ACTGG 3 cut(s) 193, 319, 338
BssMI GATC 3 cut(s) 12, 466, 643
Bst4CI ACNGT 1 cut(s) 704
Bst6I CTCTTC 2 cut(s) 267, 582
BstC8I GCNNGC 2 cut(s) 213, 507
BstDEI CTNAG 3 cut(s) 291, 569, 605
BstF5I GGATG 3 cut(s) 150, 333, 395
BstKTI GATC 3 cut(s) 15, 469, 646
BstMAI GTCTC 2 cut(s) 282, 565
BstMBI GATC 3 cut(s) 12, 466, 643
BstMWI GCNNNNNNNGC 2 cut(s) 421, 435
BstNSI RCATGY 1 cut(s) 415
BstSFI CTRYAG 1 cut(s) 627
BstV1I GCAGC 3 cut(s) 242, 613, 641
BstXI CCANNNNNNTGG 2 cut(s) 105, 671
BsuRI GGCC 1 cut(s) 355
BtsCI GGATG 3 cut(s) 150, 333, 395
BtsIMutI CAGTG 1 cut(s) 566
Cac8I GCNNGC 2 cut(s) 213, 507
Cfr13I GGNCC 1 cut(s) 353
Csp6I GTAC 1 cut(s) 186
CviAII CATG 2 cut(s) 155, 412
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 3 cut(s) 291, 569, 605
DpnI GATC 3 cut(s) 14, 468, 645
DpnII GATC 3 cut(s) 12, 466, 643
DraI TTTAAA 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 267, 582
EarI CTCTTC 2 cut(s) 267, 582
Eco32I GATATC 1 cut(s) 93
EcoRV GATATC 1 cut(s) 93
FaeI CATG 2 cut(s) 158, 415
FatI CATG 2 cut(s) 154, 411
FbaI TGATCA 1 cut(s) 466
FblI GTMKAC 1 cut(s) 725
Fnu4HI GCNGC 3 cut(s) 256, 627, 630
FokI GGATG 3 cut(s) 137, 340, 402
Fsp4HI GCNGC 3 cut(s) 256, 627, 630
GluI GCNGC 3 cut(s) 256, 627, 630
HaeIII GGCC 1 cut(s) 355
HapII CCGG 1 cut(s) 5
Hin1II CATG 2 cut(s) 158, 415
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 2 cut(s) 275, 722
HpaII CCGG 1 cut(s) 5
HphI GGTGA 2 cut(s) 69, 441
Hpy166II GTNNAC 1 cut(s) 726
Hpy188I TCNGA 2 cut(s) 294, 327
Hpy188III TCNNGA 1 cut(s) 387
Hpy8I GTNNAC 1 cut(s) 726
HpyAV CCTTC 6 cut(s) 129, 140, 293, 440, 493, 587
HpyCH4III ACNGT 1 cut(s) 704
HpyCH4IV ACGT 1 cut(s) 669
HpyCH4V TGCA 7 cut(s) 258, 415, 482, 525, 629, 655, 677
HpyF10VI GCNNNNNNNGC 2 cut(s) 421, 435
HpyF3I CTNAG 3 cut(s) 291, 569, 605
HpySE526I ACGT 1 cut(s) 669
Hsp92II CATG 2 cut(s) 158, 415
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 3 cut(s) 12, 466, 643
Lsp1109I GCAGC 3 cut(s) 242, 613, 641
LweI GCATC 1 cut(s) 159
MaeII ACGT 1 cut(s) 669
MaeIII GTNAC 2 cut(s) 109, 447
MalI GATC 3 cut(s) 14, 468, 645
MboI GATC 3 cut(s) 12, 466, 643
MboII GAAGA 4 cut(s) 281, 284, 542, 599
MfeI CAATTG 1 cut(s) 364
MluCI AATT 4 cut(s) 346, 364, 402, 416
MlyI GAGTC 2 cut(s) 284, 731
MnlI CCTC 3 cut(s) 171, 544, 583
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 2 cut(s) 103, 155
MspI CCGG 1 cut(s) 5
MunI CAATTG 1 cut(s) 364
Mva1269I GAATGC 1 cut(s) 484
MwoI GCNNNNNNNGC 2 cut(s) 421, 435
NdeII GATC 3 cut(s) 12, 466, 643
NlaIII CATG 2 cut(s) 158, 415
NlaIV GGNNCC 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 447
NspI RCATGY 1 cut(s) 415
OliI CACNNNNGTG 1 cut(s) 103
PctI GAATGC 1 cut(s) 484
PkrI GCNGC 3 cut(s) 257, 628, 631
PleI GAGTC 2 cut(s) 283, 730
PpsI GAGTC 2 cut(s) 283, 730
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 353
PstI CTGCAG 1 cut(s) 631
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
RseI CAYNNNNRTG 2 cut(s) 103, 155
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 3 cut(s) 256, 627, 630
Sau3AI GATC 3 cut(s) 12, 466, 643
Sau96I GGNCC 1 cut(s) 353
ScaI AGTACT 1 cut(s) 187
SchI GAGTC 2 cut(s) 284, 731
SetI ASST 6 cut(s) 89, 257, 361, 606, 628, 672
SfaNI GCATC 1 cut(s) 159
SfcI CTRYAG 1 cut(s) 627
SmiMI CAYNNNNRTG 2 cut(s) 103, 155
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
Sse9I AATT 4 cut(s) 346, 364, 402, 416
TaaI ACNGT 1 cut(s) 704
TaiI ACGT 1 cut(s) 672
TaqI TCGA 1 cut(s) 342
TasI AATT 4 cut(s) 346, 364, 402, 416
TatI WGTACW 1 cut(s) 185
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 573
TseFI GTSAC 1 cut(s) 447
TseI GCWGC 3 cut(s) 255, 626, 629
Tsp45I GTSAC 1 cut(s) 447
TspDTI ATGAA 1 cut(s) 674
TspRI CASTG 1 cut(s) 573
XapI RAATTY 1 cut(s) 346
XceI RCATGY 1 cut(s) 415
XcmI CCANNNNNNNNNTGG 1 cut(s) 363
XmiI GTMKAC 1 cut(s) 725
ZrmI AGTACT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.