pycom01g09780

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000733
Physical Location & Seq
Forward (+)
10589036 .. 10590467
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g09780.1

Sequence Viewer

Length: 1242 bp
ATGGAAAAAGATGATCATCTTAGCGTTGTGATGCTGCCATGGTCTGCCTTTGGCCACATGATGCCTTTTTTCCAACTTTCAATAGCTTTAGCAAAAGCGAAAGTTCATGTCTCCTTCATATCCACACCAAAAAACATCCAAAGACTCCCCAAAATCTTACCAGATTTACAACCCTTTGTGCAATTAGTCCCCATTCCATTTCCACCGTTGGATCCCGATTTATTGCCGGGAGGAGCTGAGGCCACCGTAGACCTCCCCTTTGAGAACACTGACAACTTGAAGATTGCATACGACCTCCTGGAAAAACCCATCAAGCAGTTTATTGCGGATCGATTGCCTGATTCGATCATAACCGACTTTGCCGCTCATTGGGTCGTAGAGATTGGCAGAGAGTACGGCGTTCCACTTGTCTATTTTTCTGTATTCTCTGCTGCGACAAGGCTCGTTTTTAGGTCGTCTGGAAATCTCTCCAGTGGTAATACAAATGATGTTCTGCCGTCGTTGGAAAGCCTTACTTTGCCGCCGGATTTGGTTACTTATCAGTCAACGGTCGCATTCCGAGAGCACGAGGCGGTCCGTATGCATGCGGGCTTTTATGGAGGGAATGAGTCCGGGATAAGTGATGCAGAAAGGAACGCCAAGATTCTATCAGCGTGTCAAGTTCTCGCCATTCGGAGTTGCGATGAGTTTGAAGGAGAGTACTTGGAGGCATACAAGAACAACTCTGGGAAGCTTGTGATTCCCACTGGTTTGCTTCCTCCTCAGATACCTGCAAAAGGGGTAAAAGGAGAAATTTCCACTGATGATGGGATCTCTCAATGGCTCGATAAGCAAAAAACCAGGTCAGTTGTGTTCGTAGGGTTTGGGAGTGAGTGTAAGTTGAGTAAAGAGCAAGTCTTTGAGATAGCTCATGGGCTGGAGCTATCAGAACTCCCTTTTATATGGGCACTCAGAGAACCCAACGGGGCAAATAGTGAAGCTGATGCTCTGCCTCTAGGGCTTTTGGAGGAGAAGGGTATGGCTGTCGAAGTGAAACGACGCGGAGATGGATCGTTTAGTAGAGATGACATAGCCAAAAGACTCCGGCACGCGATGGTGGAAGAGGGAGGAGAGCAGTTAAGATCCAATGCGAGGAAAGCTGGAACAGTTTTTGGAAATCACAAGCTGCACCAAGACCACTACATTGGCCAGTTTGTCAACTTTCTCAAAAACAACACTACAGAAAGGTCATCCTGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

414

Amino Acids

45.7

Weight (kDa)

5.54

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 778
AccBSI CCGCTC 1 cut(s) 365
AccI GTMKAC 1 cut(s) 249
AccII CGCG 2 cut(s) 1041, 1091
AciI CCGC 6 cut(s) 326, 363, 521, 572, 587, 1041
AclWI GGATC 6 cut(s) 206, 219, 336, 818, 1057, 1116
AcoI YGGCCR 2 cut(s) 52, 1186
AcsI RAATTY 1 cut(s) 792
AfaI GTAC 2 cut(s) 395, 701
AfiI CCNNNNNNNGG 3 cut(s) 369, 776, 1131
AgsI TTSAA 3 cut(s) 81, 280, 692
AjnI CCWGG 2 cut(s) 297, 839
AluBI AGCT 8 cut(s) 86, 236, 733, 908, 922, 980, 1139, 1165
AluI AGCT 8 cut(s) 86, 236, 733, 908, 922, 980, 1139, 1165
Alw21I GWGCWC 1 cut(s) 567
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 6 cut(s) 206, 219, 336, 818, 1057, 1116
AoxI GGCC 3 cut(s) 52, 240, 1186
ApeKI GCWGC 3 cut(s) 34, 431, 1165
ApoI RAATTY 1 cut(s) 792
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AspS9I GGNCC 1 cut(s) 574
AsuC2I CCSGG 2 cut(s) 228, 613
AvaII GGWCC 1 cut(s) 574
BaeGI GKGCMC 1 cut(s) 949
BalI TGGCCA 2 cut(s) 54, 1188
BamHI GGATCC 1 cut(s) 211
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BauI CACGAG 1 cut(s) 566
Bbv12I GWGCWC 1 cut(s) 567
BbvCI CCTCAGC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 21, 418, 1152
BccI CCATC 4 cut(s) 317, 800, 1040, 1087
BceAI ACGGC 2 cut(s) 412, 481
BciT130I CCWGG 2 cut(s) 299, 841
BclI TGATCA 1 cut(s) 13
BcnI CCSGG 2 cut(s) 228, 613
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 1 cut(s) 995
BfmI CTRYAG 1 cut(s) 1218
BfuAI ACCTGC 1 cut(s) 778
BglI GCCNNNNNGGC 1 cut(s) 997
BisI GCNGC 5 cut(s) 35, 363, 432, 521, 1166
BlsI GCNGC 5 cut(s) 36, 364, 433, 522, 1167
BmcAI AGTACT 1 cut(s) 701
Bme1390I CCNGG 4 cut(s) 228, 299, 613, 841
Bme18I GGWCC 1 cut(s) 574
BmgT120I GGNCC 1 cut(s) 574
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 4 cut(s) 228, 299, 613, 841
BmsI GCATC 4 cut(s) 21, 51, 613, 973
BpmI CTGGAG 2 cut(s) 454, 938
Bpu10I CCTNAGC 1 cut(s) 237
BpuMI CCSGG 2 cut(s) 228, 613
Bsa29I ATCGAT 1 cut(s) 331
BsaBI GATNNNNATC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 859, 889
Bsc4I CCNNNNNNNGG 3 cut(s) 369, 776, 1131
Bse1I ACTGG 3 cut(s) 471, 751, 1189
Bse8I GATNNNNATC 1 cut(s) 15
BseBI CCWGG 2 cut(s) 299, 841
BseCI ATCGAT 1 cut(s) 331
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 2 cut(s) 135, 1229
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 3 cut(s) 369, 776, 1131
BseMII CTCAG 3 cut(s) 228, 776, 964
BseNI ACTGG 3 cut(s) 471, 751, 1189
BseRI GAGGAG 4 cut(s) 246, 750, 1022, 1122
BseSI GKGCMC 1 cut(s) 949
BseXI GCAGC 3 cut(s) 21, 418, 1152
BsgI GTGCAG 1 cut(s) 1151
Bsh1236I CGCG 2 cut(s) 1041, 1091
Bsh1285I CGRYCG 1 cut(s) 552
BshFI GGCC 3 cut(s) 54, 242, 1188
BshVI ATCGAT 1 cut(s) 331
BsiEI CGRYCG 1 cut(s) 552
BsiHKAI GWGCWC 1 cut(s) 567
BsiSI CCGG 4 cut(s) 227, 524, 612, 1084
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 3 cut(s) 369, 776, 1131
BsmAI GTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 3 cut(s) 54, 242, 1188
Bsp1286I GDGCHC 2 cut(s) 567, 949
Bsp143I GATC 7 cut(s) 13, 211, 328, 345, 810, 1049, 1121
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 6 cut(s) 326, 363, 521, 572, 587, 1041
BspANI GGCC 3 cut(s) 54, 242, 1188
BspCNI CTCAG 3 cut(s) 229, 775, 963
BspDI ATCGAT 1 cut(s) 331
BspFNI CGCG 2 cut(s) 1041, 1091
BspLI GGNNCC 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 778
BspPI GGATC 6 cut(s) 206, 219, 336, 818, 1057, 1116
BsrBI CCGCTC 1 cut(s) 365
BsrI ACTGG 3 cut(s) 471, 751, 1189
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 7 cut(s) 13, 211, 328, 345, 810, 1049, 1121
BssSI CACGAG 1 cut(s) 566
BssT1I CCWWGG 1 cut(s) 38
Bst2BI CACGAG 1 cut(s) 566
Bst2UI CCWGG 2 cut(s) 299, 841
Bst4CI ACNGT 4 cut(s) 207, 247, 550, 1147
Bst6I CTCTTC 1 cut(s) 1095
BstC8I GCNNGC 3 cut(s) 585, 589, 1089
BstDEI CTNAG 4 cut(s) 20, 237, 762, 950
BstDSI CCRYGG 1 cut(s) 38
BstENI CCTNNNNNAGG 1 cut(s) 774
BstF5I GGATG 2 cut(s) 135, 1229
BstFNI CGCG 2 cut(s) 1041, 1091
BstKTI GATC 7 cut(s) 16, 214, 331, 348, 813, 1052, 1124
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 7 cut(s) 13, 211, 328, 345, 810, 1049, 1121
BstMCI CGRYCG 1 cut(s) 552
BstMWI GCNNNNNNNGC 3 cut(s) 829, 997, 1136
BstNI CCWGG 2 cut(s) 299, 841
BstNSI RCATGY 1 cut(s) 587
BstSCI CCNGG 4 cut(s) 226, 297, 611, 839
BstSFI CTRYAG 1 cut(s) 1218
BstSLI GKGCMC 1 cut(s) 949
BstUI CGCG 2 cut(s) 1041, 1091
BstV1I GCAGC 3 cut(s) 21, 418, 1152
BstX2I RGATCY 3 cut(s) 211, 810, 1121
BstXI CCANNNNNNTGG 1 cut(s) 1184
BstYI RGATCY 3 cut(s) 211, 810, 1121
Bsu15I ATCGAT 1 cut(s) 331
BsuRI GGCC 3 cut(s) 54, 242, 1188
BsuTUI ATCGAT 1 cut(s) 331
BtgI CCRYGG 1 cut(s) 38
BtgZI GCGATG 2 cut(s) 696, 1106
BtsCI GGATG 2 cut(s) 135, 1229
BtsIMutI CAGTG 4 cut(s) 267, 478, 744, 798
BveI ACCTGC 1 cut(s) 778
Cac8I GCNNGC 3 cut(s) 585, 589, 1089
Cfr13I GGNCC 1 cut(s) 574
ClaI ATCGAT 1 cut(s) 331
CpoI CGGWCCG 1 cut(s) 574
CseI GACGC 1 cut(s) 1047
CsiI ACCWGGT 1 cut(s) 839
Csp6I GTAC 2 cut(s) 394, 700
CspI CGGWCCG 1 cut(s) 574
CviAII CATG 5 cut(s) 39, 58, 107, 584, 911
CviQI GTAC 2 cut(s) 394, 700
DdeI CTNAG 4 cut(s) 20, 237, 762, 950
DpnI GATC 7 cut(s) 15, 213, 330, 347, 812, 1051, 1123
DpnII GATC 7 cut(s) 13, 211, 328, 345, 810, 1049, 1121
EaeI YGGCCR 2 cut(s) 52, 1186
Eam1104I CTCTTC 1 cut(s) 1095
EarI CTCTTC 1 cut(s) 1095
Eco130I CCWWGG 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 574
EcoNI CCTNNNNNAGG 1 cut(s) 774
EcoRII CCWGG 2 cut(s) 297, 839
EcoT14I CCWWGG 1 cut(s) 38
EcoT22I ATGCAT 1 cut(s) 585
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 5 cut(s) 42, 61, 110, 587, 914
FalI AAGNNNNNCTT 2 cut(s) 499, 531
FaqI GGGAC 1 cut(s) 173
FatI CATG 5 cut(s) 38, 57, 106, 583, 910
FauI CCCGC 1 cut(s) 580
FbaI TGATCA 1 cut(s) 13
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 5 cut(s) 35, 363, 432, 521, 1166
FokI GGATG 2 cut(s) 122, 1216
Fsp4HI GCNGC 5 cut(s) 35, 363, 432, 521, 1166
FspBI CTAG 1 cut(s) 995
GluI GCNGC 5 cut(s) 35, 363, 432, 521, 1166
GsuI CTGGAG 2 cut(s) 454, 938
HaeIII GGCC 3 cut(s) 54, 242, 1188
HapII CCGG 4 cut(s) 227, 524, 612, 1084
HgaI GACGC 1 cut(s) 1047
Hin1II CATG 5 cut(s) 42, 61, 110, 587, 914
HincII GTYRAC 2 cut(s) 546, 1198
HindII GTYRAC 2 cut(s) 546, 1198
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 6 cut(s) 144, 341, 608, 643, 739, 1080
HpaII CCGG 4 cut(s) 227, 524, 612, 1084
Hpy166II GTNNAC 3 cut(s) 250, 546, 1198
Hpy188I TCNGA 5 cut(s) 560, 675, 765, 928, 953
Hpy188III TCNNGA 2 cut(s) 215, 459
Hpy8I GTNNAC 3 cut(s) 250, 546, 1198
Hpy99I CGWCG 2 cut(s) 502, 1041
HpyAV CCTTC 3 cut(s) 124, 686, 1006
HpyCH4III ACNGT 4 cut(s) 207, 247, 550, 1147
HpyCH4V TGCA 6 cut(s) 181, 287, 583, 626, 773, 1168
HpyF10VI GCNNNNNNNGC 3 cut(s) 829, 997, 1136
HpyF3I CTNAG 4 cut(s) 20, 237, 762, 950
Hsp92II CATG 5 cut(s) 42, 61, 110, 587, 914
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 7 cut(s) 13, 211, 328, 345, 810, 1049, 1121
LmnI GCTCC 2 cut(s) 233, 919
Lsp1109I GCAGC 3 cut(s) 21, 418, 1152
LweI GCATC 4 cut(s) 21, 51, 613, 973
MabI ACCWGGT 1 cut(s) 839
MaeI CTAG 1 cut(s) 995
MaeIII GTNAC 1 cut(s) 532
MalI GATC 7 cut(s) 15, 213, 330, 347, 812, 1051, 1123
MbiI CCGCTC 1 cut(s) 365
MboI GATC 7 cut(s) 13, 211, 328, 345, 810, 1049, 1121
MboII GAAGA 2 cut(s) 292, 1112
MflI RGATCY 3 cut(s) 211, 810, 1121
MhlI GDGCHC 2 cut(s) 567, 949
MlsI TGGCCA 2 cut(s) 54, 1188
MluCI AATT 2 cut(s) 182, 792
MluNI TGGCCA 2 cut(s) 54, 1188
MlyI GAGTC 3 cut(s) 138, 617, 1074
MmeI TCCRAC 3 cut(s) 97, 189, 483
Mox20I TGGCCA 2 cut(s) 54, 1188
Mph1103I ATGCAT 1 cut(s) 585
MscI TGGCCA 2 cut(s) 54, 1188
MseI TTAA 1 cut(s) 1118
Msp20I TGGCCA 2 cut(s) 54, 1188
MspI CCGG 4 cut(s) 227, 524, 612, 1084
MspR9I CCNGG 4 cut(s) 228, 299, 613, 841
Mva1269I GAATGC 1 cut(s) 554
MvaI CCWGG 2 cut(s) 299, 841
MvnI CGCG 2 cut(s) 1041, 1091
MwoI GCNNNNNNNGC 3 cut(s) 829, 997, 1136
NciI CCSGG 2 cut(s) 228, 613
NcoI CCATGG 1 cut(s) 38
NdeII GATC 7 cut(s) 13, 211, 328, 345, 810, 1049, 1121
NlaIII CATG 5 cut(s) 42, 61, 110, 587, 914
NlaIV GGNNCC 1 cut(s) 213
NsiI ATGCAT 1 cut(s) 585
NspI RCATGY 1 cut(s) 587
PaeI GCATGC 1 cut(s) 587
PctI GAATGC 1 cut(s) 554
PfeI GAWTC 3 cut(s) 341, 643, 739
PfoI TCCNGGA 2 cut(s) 297, 611
PkrI GCNGC 5 cut(s) 36, 364, 433, 522, 1167
PleI GAGTC 3 cut(s) 138, 616, 1074
PpsI GAGTC 3 cut(s) 138, 616, 1074
Psp6I CCWGG 2 cut(s) 297, 839
PspGI CCWGG 2 cut(s) 297, 839
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 574
PsuI RGATCY 3 cut(s) 211, 810, 1121
RsaI GTAC 2 cut(s) 395, 701
RsaNI GTAC 2 cut(s) 394, 700
Rsr2I CGGWCCG 1 cut(s) 574
RsrII CGGWCCG 1 cut(s) 574
SaqAI TTAA 1 cut(s) 1118
SatI GCNGC 5 cut(s) 35, 363, 432, 521, 1166
Sau3AI GATC 7 cut(s) 13, 211, 328, 345, 810, 1049, 1121
Sau96I GGNCC 1 cut(s) 574
ScaI AGTACT 1 cut(s) 701
SchI GAGTC 3 cut(s) 138, 617, 1074
ScrFI CCNGG 4 cut(s) 228, 299, 613, 841
SduI GDGCHC 2 cut(s) 567, 949
SexAI ACCWGGT 1 cut(s) 839
SfaNI GCATC 4 cut(s) 21, 51, 613, 973
SfcI CTRYAG 1 cut(s) 1218
SinI GGWCC 1 cut(s) 574
SphI GCATGC 1 cut(s) 587
Sse9I AATT 2 cut(s) 182, 792
SsiI CCGC 6 cut(s) 326, 363, 521, 572, 587, 1041
SspMI CTAG 1 cut(s) 995
StyD4I CCNGG 4 cut(s) 226, 297, 611, 839
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 4 cut(s) 207, 247, 550, 1147
TaqI TCGA 4 cut(s) 331, 344, 825, 1026
TasI AATT 2 cut(s) 182, 792
TatI WGTACW 1 cut(s) 699
TauI GCSGC 2 cut(s) 365, 523
TfiI GAWTC 3 cut(s) 341, 643, 739
Tru1I TTAA 1 cut(s) 1118
Tru9I TTAA 1 cut(s) 1118
TscAI CASTG 4 cut(s) 274, 478, 751, 805
TseI GCWGC 3 cut(s) 34, 431, 1165
TspDTI ATGAA 2 cut(s) 95, 106
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 4 cut(s) 274, 478, 751, 805
VpaK11BI GGWCC 1 cut(s) 574
XagI CCTNNNNNAGG 1 cut(s) 774
XapI RAATTY 1 cut(s) 792
XceI RCATGY 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 1 cut(s) 995
ZrmI AGTACT 1 cut(s) 701
Zsp2I ATGCAT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.