Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000733

Physical Location & Seq

Genomic Coordinates Forward (+)

13497201 .. 13498371

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGATCGCATACGATCTTCTTCAAACACCCATCAAACAGTTCATTGCATATCAAATGCCGGATTGGATAGTACTCGATTTCGCTGCTCATTGGGTGGTCGACATTGCTAAAGAGTATGTCGTTCCATTAGTCTACTTCTCTGCTTTCTCCGCGGCTAGCAGTGTATTCTTTGGCCCCCCTGAAAATCTCTCTGGTGTGAACAGAAACTATGTTCTTCCATCACCAAAAAGCTTGACATCTCCACCAGACTGGATCGCCTTTCCTTCTTTGGTGGCGTTCAAGGAGTATGAAGCAATTTATGTGCCTCGAGGGTTTTGGGGTGCAGATAGTACTGGGATAAGTGGAGCTTCTAGGCTTGCCAAGATAATCAGCAAGTCAAGCTTTGGCACTTCGTACTTAACACACCTTGGGGGTGAGTGTAAGCTGAACAAAGAACAATTTCATGAGATAGCTCATGGGTTGGAGTTTTCGGATTTGCCATTTATTTGGGGACTCATAAAACCCAATTCAGATAACAGTGACCAAGTCGATGATTTTCTGCCTTTAGGTTTTGTTGACAGAACATCTGAGAAAGGGCTTGTTTGCTTCGGATGGGTGCCTCAAATGGAAATTTTGGGGCACCCATCAATTGGGGGCTCTTTGTTTCATTCTGGATGGGGTTCTGTGATTGAGACTCTGCAATTTGGGCATTGCCTTGTTGTGTTACCAATAATTTTTGATCAACCTTTGAACGCAAGGCTTTTGGTAGAGAAGGGTCTGGCTGCCGAAGTGAAGCGCAACGAAGATGGATCGCTTAGTAGAGAGGAAATAGCAAAATCATTGAGGCTAGCAATAGTGGAAGAAGAAGGAGAGCAGCTGAGAACCAATGCGAGGAAAGCTGGAGCAGCTTTTGGAGATCACAAGCTGCAAGACCACTACATCGGTGCATTTGTTGAATATCTTAAAAATAACATCAAAAAAGAGGTGATCAATCGATCATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

328

Amino Acids

36.3

Weight (kDa)

5.51

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	141 - 278	1.1e-12	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05830 FvH4_7g15020 FvH4_7g15600 FvH4_7g15610 FvH4_7g15620 FvH4_7g15650
malus_domestica	MD00G1112100.v1.1 MD01G1068500.v1.1 MD01G1068700.v1.1 MD01G1068800.v1.1 MD03G1019100.v1.1
prunus_persica	Prupe.2G174700_v2.0.a1 Prupe.2G175000_v2.0.a1 Prupe.2G175000_v2.0.a1
pyrus_communis	pycom01g09780 pycom01g09790 pycom01g09820 pycom01g09840 pycom07g13020
rosa_chinensis	RchiOBHm_Chr1g0357061 RchiOBHm_Chr1g0357071 RchiOBHm_Chr1g0358281 RchiOBHm_Chr1g0358291 RchiOBHm_Chr1g0358321 RchiOBHm_Chr1g0358331
rosa_laevigata	RLG00000027973 RLG00000027974 RLG00000027975 RLG00000027976 RLG00000028053 RLG00000028054 RLG00000028055 RLG00000028057 RLG00000028153
rosa_multiflora	Rmu_sc0000166.1_g000044 Rmu_sc0000166.1_g000047 Rmu_sc0002071.1_g000024 Rmu_sc0002071.1_g000025 Rmu_sc0002144.1_g000001 Rmu_sc0013980.1_g000005 Rmu_sc0013980.1_g000013 Rmu_sc0013980.1_g000020 Rmu_sc0013980.1_g000023 Rmu_sc0016079.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298220 Rroxscaffold_4G00298250 Rroxscaffold_4G00299080
rosa_rugosa	Rorug01G0246700 Rorug01G0254000 Rorug01G0254100 Rorug01G0260600 Rorug01G0261000
rosa_samantha	Rh1AG267700 Rh1AG267800 Rh1AG268200 Rh1AG274700 Rh1BG235600 Rh1BG235700 Rh1BG235900 Rh1BG241500 Rh1CG243100 Rh1CG251700 Rh1CG251900 Rh1CG257800 Rh1DG263000 Rh1DG263100 Rh1DG263200 Rh1DG270300
rosa_wichuraiana	Rw1G023630 Rw1G023640 Rw1G023670 Rw1G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	306
AccB1I	GGYRCC	2 cut(s)	595, 618
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccI	GTMKAC	2 cut(s)	99, 132
AccII	CGCG	1 cut(s)	152
AciI	CCGC	2 cut(s)	150, 152
AclWI	GGATC	2 cut(s)	260, 796
AcsI	RAATTY	1 cut(s)	609
AfaI	GTAC	3 cut(s)	72, 331, 395
AfiI	CCNNNNNNNGG	2 cut(s)	629, 870
AgsI	TTSAA	4 cut(s)	23, 280, 730, 935
AluBI	AGCT	9 cut(s)	231, 347, 381, 424, 452, 856, 878, 887, 904
AluI	AGCT	9 cut(s)	231, 347, 381, 424, 452, 856, 878, 887, 904
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	2 cut(s)	260, 796
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	5 cut(s)	83, 761, 853, 884, 904
ApoI	RAATTY	1 cut(s)	609
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	777
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	3 cut(s)	213, 425, 976
AsuNHI	GCTAGC	2 cut(s)	155, 826
AvaI	CYCGRG	1 cut(s)	306
BaeGI	GKGCMC	1 cut(s)	621
BanI	GGYRCC	2 cut(s)	595, 618
BanII	GRGCYC	1 cut(s)	638
BbvI	GCAGC	5 cut(s)	70, 748, 865, 891, 896
BccI	CCATC	6 cut(s)	38, 226, 585, 631, 648, 779
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BclI	TGATCA	2 cut(s)	718, 966
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	4 cut(s)	156, 351, 827, 982
BisI	GCNGC	6 cut(s)	84, 153, 762, 854, 885, 905
BlsI	GCNGC	6 cut(s)	85, 154, 763, 855, 886, 906
BmcAI	AGTACT	2 cut(s)	72, 331
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	3 cut(s)	175, 597, 620
BmrI	ACTGGG	1 cut(s)	342
BmtI	GCTAGC	2 cut(s)	159, 830
BmuI	ACTGGG	1 cut(s)	342
BpmI	CTGGAG	1 cut(s)	900
Bsa29I	ATCGAT	1 cut(s)	973
BsaJI	CCNNGG	2 cut(s)	150, 406
Bsc4I	CCNNNNNNNGG	2 cut(s)	629, 870
Bse1I	ACTGG	2 cut(s)	254, 337
Bse3DI	GCAATG	3 cut(s)	42, 102, 688
BseCI	ATCGAT	1 cut(s)	973
BseDI	CCNNGG	2 cut(s)	150, 406
BseGI	GGATG	3 cut(s)	596, 659, 977
BseLI	CCNNNNNNNGG	2 cut(s)	629, 870
BseMI	GCAATG	3 cut(s)	42, 102, 688
BseMII	CTCAG	2 cut(s)	558, 848
BseNI	ACTGG	2 cut(s)	254, 337
BseSI	GKGCMC	1 cut(s)	621
BseXI	GCAGC	5 cut(s)	70, 748, 865, 891, 896
BsgI	GTGCAG	1 cut(s)	342
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	174
BshNI	GGYRCC	2 cut(s)	595, 618
BshVI	ATCGAT	1 cut(s)	973
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	2 cut(s)	629, 870
BsmAI	GTCTC	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	306
Bsp1286I	GDGCHC	2 cut(s)	621, 638
Bsp143I	GATC	8 cut(s)	3, 13, 252, 718, 788, 895, 966, 974
BspACI	CCGC	2 cut(s)	150, 152
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	2 cut(s)	559, 849
BspDI	ATCGAT	1 cut(s)	973
BspFNI	CGCG	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	3 cut(s)	175, 597, 620
BspOI	GCTAGC	2 cut(s)	159, 830
BspPI	GGATC	2 cut(s)	260, 796
BspT107I	GGYRCC	2 cut(s)	595, 618
BsrDI	GCAATG	3 cut(s)	42, 102, 688
BsrI	ACTGG	2 cut(s)	254, 337
BssECI	CCNNGG	2 cut(s)	150, 406
BssMI	GATC	8 cut(s)	3, 13, 252, 718, 788, 895, 966, 974
BssT1I	CCWWGG	1 cut(s)	406
Bst4CI	ACNGT	2 cut(s)	39, 518
BstC8I	GCNNGC	3 cut(s)	157, 357, 828
BstDEI	CTNAG	3 cut(s)	567, 794, 857
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	3 cut(s)	596, 659, 977
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	777
BstKTI	GATC	8 cut(s)	6, 16, 255, 721, 791, 898, 969, 977
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	8 cut(s)	3, 13, 252, 718, 788, 895, 966, 974
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 378, 685, 875, 884
BstSLI	GKGCMC	1 cut(s)	621
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	5 cut(s)	70, 748, 865, 891, 896
BstXI	CCANNNNNNTGG	2 cut(s)	249, 486
Bsu15I	ATCGAT	1 cut(s)	973
BsuRI	GGCC	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	973
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	3 cut(s)	596, 659, 977
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	2 cut(s)	166, 523
Cac8I	GCNNGC	3 cut(s)	157, 357, 828
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	777
Cfr13I	GGNCC	1 cut(s)	173
Cfr42I	CCGCGG	1 cut(s)	153
ClaI	ATCGAT	1 cut(s)	973
Csp6I	GTAC	3 cut(s)	71, 330, 394
CviAII	CATG	2 cut(s)	443, 455
CviQI	GTAC	3 cut(s)	71, 330, 394
DdeI	CTNAG	3 cut(s)	567, 794, 857
DpnI	GATC	8 cut(s)	5, 15, 254, 720, 790, 897, 968, 976
DpnII	GATC	8 cut(s)	3, 13, 252, 718, 788, 895, 966, 974
Eco130I	CCWWGG	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	638
Eco88I	CYCGRG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	638
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	2 cut(s)	446, 458
FaiI	YATR	9 cut(s)	10, 49, 117, 210, 288, 300, 444, 456, 497
FalI	AAGNNNNNCTT	4 cut(s)	331, 363, 365, 397
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	2 cut(s)	442, 454
FbaI	TGATCA	2 cut(s)	718, 966
FblI	GTMKAC	2 cut(s)	99, 132
Fnu4HI	GCNGC	6 cut(s)	84, 153, 762, 854, 885, 905
FokI	GGATG	3 cut(s)	603, 666, 964
FriOI	GRGCYC	1 cut(s)	638
Fsp4HI	GCNGC	6 cut(s)	84, 153, 762, 854, 885, 905
FspBI	CTAG	4 cut(s)	156, 351, 827, 982
GlaI	GCGC	1 cut(s)	776
GluI	GCNGC	6 cut(s)	84, 153, 762, 854, 885, 905
GsuI	CTGGAG	1 cut(s)	900
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	1 cut(s)	777
Hin1II	CATG	2 cut(s)	446, 458
Hin6I	GCGC	1 cut(s)	775
HinP1I	GCGC	1 cut(s)	775
HincII	GTYRAC	2 cut(s)	100, 556
HindII	GTYRAC	2 cut(s)	100, 556
HindIII	AAGCTT	2 cut(s)	229, 379
HinfI	GANTC	2 cut(s)	492, 673
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	3 cut(s)	213, 425, 976
Hpy166II	GTNNAC	4 cut(s)	100, 133, 199, 556
Hpy188I	TCNGA	4 cut(s)	472, 511, 568, 590
Hpy188III	TCNNGA	2 cut(s)	443, 651
Hpy8I	GTNNAC	4 cut(s)	100, 133, 199, 556
HpyAV	CCTTC	3 cut(s)	273, 745, 839
HpyCH4III	ACNGT	2 cut(s)	39, 518
HpyCH4V	TGCA	5 cut(s)	47, 323, 679, 907, 926
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 378, 685, 875, 884
HpyF3I	CTNAG	3 cut(s)	567, 794, 857
Hsp92II	CATG	2 cut(s)	446, 458
HspAI	GCGC	1 cut(s)	775
Ksp22I	TGATCA	2 cut(s)	718, 966
KspI	CCGCGG	1 cut(s)	153
Kzo9I	GATC	8 cut(s)	3, 13, 252, 718, 788, 895, 966, 974
LmnI	GCTCC	2 cut(s)	344, 881
LpnPI	CCDG	9 cut(s)	72, 177, 192, 235, 258, 318, 636, 743, 864
Lsp1109I	GCAGC	5 cut(s)	70, 748, 865, 891, 896
MaeI	CTAG	4 cut(s)	156, 351, 827, 982
MaeIII	GTNAC	2 cut(s)	518, 702
MalI	GATC	8 cut(s)	5, 15, 254, 720, 790, 897, 968, 976
MboI	GATC	8 cut(s)	3, 13, 252, 718, 788, 895, 966, 974
MboII	GAAGA	6 cut(s)	8, 11, 206, 794, 851, 854
MfeI	CAATTG	1 cut(s)	627
MhlI	GDGCHC	2 cut(s)	621, 638
MluCI	AATT	7 cut(s)	294, 437, 505, 609, 627, 680, 711
MlyI	GAGTC	2 cut(s)	486, 667
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	7 cut(s)	302, 315, 609, 796, 816, 864, 955
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	2 cut(s)	398, 942
MspA1I	CMGCKG	2 cut(s)	152, 856
MspI	CCGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	627
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	5 cut(s)	149, 378, 685, 875, 884
NdeII	GATC	8 cut(s)	3, 13, 252, 718, 788, 895, 966, 974
NheI	GCTAGC	2 cut(s)	155, 826
NlaIII	CATG	2 cut(s)	446, 458
NlaIV	GGNNCC	3 cut(s)	175, 597, 620
NmuCI	GTSAC	1 cut(s)	518
PaeR7I	CTCGAG	1 cut(s)	306
PagI	TCATGA	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	438
PflFI	GACNNNGTC	1 cut(s)	524
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	6 cut(s)	85, 154, 763, 855, 886, 906
PleI	GAGTC	2 cut(s)	486, 667
PpsI	GAGTC	2 cut(s)	486, 667
PspN4I	GGNNCC	3 cut(s)	175, 597, 620
PspPI	GGNCC	1 cut(s)	173
PspXI	VCTCGAGB	1 cut(s)	306
PsyI	GACNNNGTC	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	856
RsaI	GTAC	3 cut(s)	72, 331, 395
RsaNI	GTAC	3 cut(s)	71, 330, 394
SacII	CCGCGG	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	398, 942
SatI	GCNGC	6 cut(s)	84, 153, 762, 854, 885, 905
Sau3AI	GATC	8 cut(s)	3, 13, 252, 718, 788, 895, 966, 974
Sau96I	GGNCC	1 cut(s)	173
ScaI	AGTACT	2 cut(s)	72, 331
SchI	GAGTC	2 cut(s)	486, 667
SduI	GDGCHC	2 cut(s)	621, 638
Sfr274I	CTCGAG	1 cut(s)	306
Sfr303I	CCGCGG	1 cut(s)	153
SgrBI	CCGCGG	1 cut(s)	153
SlaI	CTCGAG	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
Sse9I	AATT	7 cut(s)	294, 437, 505, 609, 627, 680, 711
SsiI	CCGC	2 cut(s)	150, 152
SspMI	CTAG	4 cut(s)	156, 351, 827, 982
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	2 cut(s)	39, 518
TaqI	TCGA	5 cut(s)	75, 99, 307, 528, 973
TasI	AATT	7 cut(s)	294, 437, 505, 609, 627, 680, 711
TatI	WGTACW	2 cut(s)	70, 329
TauI	GCSGC	1 cut(s)	155
Tru1I	TTAA	2 cut(s)	398, 942
Tru9I	TTAA	2 cut(s)	398, 942
TscAI	CASTG	2 cut(s)	166, 523
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	5 cut(s)	83, 761, 853, 884, 904
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	4 cut(s)	31, 303, 431, 635
TspRI	CASTG	2 cut(s)	166, 523
Tth111I	GACNNNGTC	1 cut(s)	524
Van91I	CCANNNNNTGG	1 cut(s)	629
XapI	RAATTY	1 cut(s)	609
XhoI	CTCGAG	1 cut(s)	306
XmiI	GTMKAC	2 cut(s)	99, 132
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	4 cut(s)	156, 351, 827, 982
ZrmI	AGTACT	2 cut(s)	72, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.