FvH4_7g15620

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000733
Physical Location & Seq
Forward (+)
13486936 .. 13488912
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15620.t1

Sequence Viewer

Length: 1422 bp
ATGTCAGAAATGGTTAAGGAGCTTCATGTTGTGATGCTTCCATGGTCTGCCTTTGGCCATTTGATGCCCTTCTTTCAACTCTCTATAGCCTTGGCCAAGGCCAAAGTTCATGTATCCTTTATATCGACACCCAGAAACATCGAAAGGCTCCCCAAAATCGCACCCGACTTGCAACCTTTCATAAACCTAGTCCCCATTCCATTTCCTCCTCTGGAACCTGACTTCTTGCCGGAAGGAGCCGAGGCCAGTGTCGATGTACCCGTACAACAGTATGCAAACTTACAGGTCGCAGTTGATCTTCTGCAAACACCAATCAAGCAGTTCATTGCAGATAAAATGCCGGATTGGATTATAGCCGATTTCTTTACTCACTGGGTCGTCGACATTGCTAAAGAGTATGATGTTCCACTAGCCTACTTCTCAGTTTTCAGTGCTGCAACCTGTGTTTTCTTTGGCCCCCCTGAACATCTCACTGCTGCAACCAGAAACGGTGTTCTCCCAACGATACAAAGCTTGACATCTCCACCAGAATGGATCACTTTTCCTTCTTTGCTGTCATTGAAGGACTATGAAGCTGTTAAACGGCTTCTCGCTTGGGAAGTAAATAAAACTGGGATGTGTTTTGCTTGGAGGCTTGCCAAGATCGTATCAGCAAGTCAAGTTTTGGCGATTCGTACTTGCAGTGAGATTGAAGGAGACTACTTGGAAGTGTACAAGAAAATTACTGGAAAGCCAGTGATTCCCACTGGTGTACTTCCTCCTGATCAACCTGGGAAAAGGGCAGAAGGGGAAGTAAACTCCGATGCGTCTATGTTTGATTGGCTTGATAAGCAAAAACCCAGGTCAGTTGTGTTTGTGGGGTTCGGGAGTGAGTGTAGGTTAAGCAAAGAACAAGTTCATGAGATGGCTCATGGGCTGGAGCTATCGGAACAGCCATTTATTTGGGGACTCAGAAAACCTAATTCAACTGAGAGTGATGAAGTGGATGATTTTTTGCCTTTAGGTTTTACTGACAGAACATCAGAGAAAGGGCTTGTTTGCTTCGGATGGGTGCCCCAAATGGAAATTTTGGGGCACCCATCAATTGGGGGCTCTTTGTTTCATTCTGGATGGGGTTCGGTGATTGAGACTCTGCAATTTGGGCATGGCCTTGTTGTGTTACCCTTCATGTATGATCAGCCTTTGAATGCAAGGCTTCTGGTAGAGAAGGGTCTGGCTGCCGAAGTGAAGCGAAACGAAGACGGGTCGTTTAGTAGAGGGGAAATAGCAAAATCACTGAGGCTAGCAATGGTGGAAGAAGAAGGAGAGCAGCTACGAAGCAATGCAAGGAAAGCTGCTGCAGTTATTGGAGATCACAAGCTGCAACATGATCACTACATTAGTGCATTCGTTAACTATCTTAAAAATAATGTTGCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

474

Amino Acids

52.75

Weight (kDa)

5.52

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 278 - 411 1.6e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1051, 1074
AccB7I CCANNNNNTGG 1 cut(s) 1085
AccI GTMKAC 1 cut(s) 381
AclWI GGATC 1 cut(s) 542
AcoI YGGCCR 2 cut(s) 55, 93
AcsI RAATTY 1 cut(s) 1065
AfaI GTAC 5 cut(s) 258, 264, 676, 713, 753
AfiI CCNNNNNNNGG 1 cut(s) 1085
AgsI TTSAA 5 cut(s) 77, 562, 692, 966, 1186
AjnI CCWGG 2 cut(s) 769, 839
AluBI AGCT 7 cut(s) 22, 513, 575, 922, 1312, 1334, 1360
AluI AGCT 7 cut(s) 22, 513, 575, 922, 1312, 1334, 1360
Alw26I GTCTC 2 cut(s) 690, 1121
AlwI GGATC 1 cut(s) 542
AoxI GGCC 6 cut(s) 55, 93, 99, 243, 454, 1147
ApeKI GCWGC 7 cut(s) 434, 476, 1217, 1309, 1334, 1337, 1360
ApoI RAATTY 1 cut(s) 1065
Asp700I GAANNNNTTC 1 cut(s) 894
AspS9I GGNCC 1 cut(s) 455
AsuHPI GGTGA 1 cut(s) 1132
AsuNHI GCTAGC 1 cut(s) 1282
BaeGI GKGCMC 2 cut(s) 1056, 1077
BalI TGGCCA 2 cut(s) 57, 95
BanI GGYRCC 2 cut(s) 1051, 1074
BanII GRGCYC 1 cut(s) 1094
BbsI GAAGAC 1 cut(s) 1245
BbvI GCAGC 7 cut(s) 421, 463, 1204, 1321, 1321, 1324, 1347
BccI CCATC 4 cut(s) 898, 1041, 1087, 1104
BceAI ACGGC 1 cut(s) 599
BciT130I CCWGG 2 cut(s) 771, 841
BciVI GTATCC 1 cut(s) 124
BclI TGATCA 3 cut(s) 763, 1174, 1369
BcoDI GTCTC 2 cut(s) 690, 1121
BfaI CTAG 3 cut(s) 188, 410, 1283
BfmI CTRYAG 2 cut(s) 84, 1338
BfuI GTATCC 1 cut(s) 124
BisI GCNGC 7 cut(s) 435, 477, 1218, 1310, 1335, 1338, 1361
BlsI GCNGC 7 cut(s) 436, 478, 1219, 1311, 1336, 1339, 1362
Bme1390I CCNGG 2 cut(s) 771, 841
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 6 cut(s) 149, 216, 238, 457, 1053, 1076
BmrFI CCNGG 2 cut(s) 771, 841
BmrI ACTGGG 2 cut(s) 382, 621
BmsI GCATC 3 cut(s) 24, 54, 793
BmtI GCTAGC 1 cut(s) 1286
BmuI ACTGGG 2 cut(s) 382, 621
BpiI GAAGAC 1 cut(s) 1245
BpmI CTGGAG 1 cut(s) 938
BsaJI CCNNGG 6 cut(s) 41, 90, 96, 240, 770, 839
BsaXI ACNNNNNCTCC 2 cut(s) 859, 889
Bsc4I CCNNNNNNNGG 1 cut(s) 1085
Bse1I ACTGG 6 cut(s) 246, 377, 616, 730, 734, 751
Bse3DI GCAATG 4 cut(s) 324, 384, 1293, 1327
BseBI CCWGG 2 cut(s) 771, 841
BseDI CCNNGG 6 cut(s) 41, 90, 96, 240, 770, 839
BseGI GGATG 4 cut(s) 621, 991, 1052, 1115
BseLI CCNNNNNNNGG 1 cut(s) 1085
BseMI GCAATG 4 cut(s) 324, 384, 1293, 1327
BseMII CTCAG 4 cut(s) 435, 960, 964, 1268
BseNI ACTGG 6 cut(s) 246, 377, 616, 730, 734, 751
BseRI GAGGAG 1 cut(s) 198
BseSI GKGCMC 2 cut(s) 1056, 1077
BseXI GCAGC 7 cut(s) 421, 463, 1204, 1321, 1321, 1324, 1347
BshFI GGCC 6 cut(s) 57, 95, 101, 245, 456, 1149
BshNI GGYRCC 2 cut(s) 1051, 1074
BsiSI CCGG 2 cut(s) 230, 341
BslFI GGGAC 2 cut(s) 176, 960
BslI CCNNNNNNNGG 1 cut(s) 1085
BsmAI GTCTC 2 cut(s) 690, 1121
BsmFI GGGAC 2 cut(s) 176, 960
BsmI GAATGC 2 cut(s) 1192, 1385
BsnI GGCC 6 cut(s) 57, 95, 101, 245, 456, 1149
Bsp1286I GDGCHC 3 cut(s) 1056, 1077, 1094
Bsp1407I TGTACA 1 cut(s) 711
Bsp143I GATC 7 cut(s) 295, 534, 642, 763, 1174, 1351, 1369
Bsp19I CCATGG 1 cut(s) 41
BspANI GGCC 6 cut(s) 57, 95, 101, 245, 456, 1149
BspCNI CTCAG 4 cut(s) 434, 961, 963, 1269
BspHI TCATGA 1 cut(s) 898
BspLI GGNNCC 6 cut(s) 149, 216, 238, 457, 1053, 1076
BspMAI CTGCAG 1 cut(s) 1342
BspOI GCTAGC 1 cut(s) 1286
BspPI GGATC 1 cut(s) 542
BspT107I GGYRCC 2 cut(s) 1051, 1074
BsrDI GCAATG 4 cut(s) 324, 384, 1293, 1327
BsrGI TGTACA 1 cut(s) 711
BsrI ACTGG 6 cut(s) 246, 377, 616, 730, 734, 751
BssECI CCNNGG 6 cut(s) 41, 90, 96, 240, 770, 839
BssMI GATC 7 cut(s) 295, 534, 642, 763, 1174, 1351, 1369
BssT1I CCWWGG 3 cut(s) 41, 90, 96
Bst2UI CCWGG 2 cut(s) 771, 841
Bst4CI ACNGT 2 cut(s) 270, 491
BstAUI TGTACA 1 cut(s) 711
BstC8I GCNNGC 2 cut(s) 636, 1284
BstDEI CTNAG 4 cut(s) 421, 950, 969, 1277
BstDSI CCRYGG 1 cut(s) 41
BstF5I GGATG 4 cut(s) 621, 991, 1052, 1115
BstKTI GATC 7 cut(s) 298, 537, 645, 766, 1177, 1354, 1372
BstMAI GTCTC 2 cut(s) 690, 1121
BstMBI GATC 7 cut(s) 295, 534, 642, 763, 1174, 1351, 1369
BstMWI GCNNNNNNNGC 3 cut(s) 829, 1141, 1331
BstNI CCWGG 2 cut(s) 771, 841
BstSCI CCNGG 2 cut(s) 769, 839
BstSFI CTRYAG 2 cut(s) 84, 1338
BstSLI GKGCMC 2 cut(s) 1056, 1077
BstV1I GCAGC 7 cut(s) 421, 463, 1204, 1321, 1321, 1324, 1347
BstV2I GAAGAC 1 cut(s) 1245
BstXI CCANNNNNNTGG 2 cut(s) 531, 942
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 6 cut(s) 57, 95, 101, 245, 456, 1149
BtgI CCRYGG 1 cut(s) 41
BtsCI GGATG 4 cut(s) 621, 991, 1052, 1115
BtsI GCAGTG 2 cut(s) 471, 688
BtsIMutI CAGTG 8 cut(s) 253, 370, 436, 471, 688, 741, 744, 1274
Cac8I GCNNGC 2 cut(s) 636, 1284
CciI TCATGA 1 cut(s) 898
Cfr13I GGNCC 1 cut(s) 455
CseI GACGC 1 cut(s) 795
Csp6I GTAC 5 cut(s) 257, 263, 675, 712, 752
CviAII CATG 8 cut(s) 26, 42, 110, 899, 911, 1145, 1168, 1367
CviQI GTAC 5 cut(s) 257, 263, 675, 712, 752
DdeI CTNAG 4 cut(s) 421, 950, 969, 1277
DpnI GATC 7 cut(s) 297, 536, 644, 765, 1176, 1353, 1371
DpnII GATC 7 cut(s) 295, 534, 642, 763, 1174, 1351, 1369
EaeI YGGCCR 2 cut(s) 55, 93
Eco130I CCWWGG 3 cut(s) 41, 90, 96
Eco24I GRGCYC 1 cut(s) 1094
EcoRII CCWGG 2 cut(s) 769, 839
EcoT14I CCWWGG 3 cut(s) 41, 90, 96
EcoT38I GRGCYC 1 cut(s) 1094
ErhI CCWWGG 3 cut(s) 41, 90, 96
FaeI CATG 8 cut(s) 29, 45, 113, 902, 914, 1148, 1171, 1370
FaqI GGGAC 2 cut(s) 176, 960
FatI CATG 8 cut(s) 25, 41, 109, 898, 910, 1144, 1167, 1366
FbaI TGATCA 3 cut(s) 763, 1174, 1369
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 7 cut(s) 435, 477, 1218, 1310, 1335, 1338, 1361
FokI GGATG 4 cut(s) 628, 998, 1059, 1122
FriOI GRGCYC 1 cut(s) 1094
Fsp4HI GCNGC 7 cut(s) 435, 477, 1218, 1310, 1335, 1338, 1361
FspBI CTAG 3 cut(s) 188, 410, 1283
GluI GCNGC 7 cut(s) 435, 477, 1218, 1310, 1335, 1338, 1361
GsuI CTGGAG 1 cut(s) 938
HaeIII GGCC 6 cut(s) 57, 95, 101, 245, 456, 1149
HapII CCGG 2 cut(s) 230, 341
HgaI GACGC 1 cut(s) 795
Hin1II CATG 8 cut(s) 29, 45, 113, 902, 914, 1148, 1171, 1370
HincII GTYRAC 2 cut(s) 382, 1393
HindII GTYRAC 2 cut(s) 382, 1393
HindIII AAGCTT 1 cut(s) 511
HinfI GANTC 4 cut(s) 670, 739, 948, 1129
HpaI GTTAAC 1 cut(s) 1393
HpaII CCGG 2 cut(s) 230, 341
HphI GGTGA 1 cut(s) 1132
Hpy166II GTNNAC 5 cut(s) 382, 712, 752, 796, 1393
Hpy188I TCNGA 6 cut(s) 7, 802, 928, 953, 1024, 1046
Hpy188III TCNNGA 5 cut(s) 212, 761, 865, 899, 1107
Hpy8I GTNNAC 5 cut(s) 382, 712, 752, 796, 1393
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 9 cut(s) 79, 227, 555, 556, 686, 779, 1174, 1201, 1295
HpyCH4III ACNGT 2 cut(s) 270, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 829, 1141, 1331
HpyF3I CTNAG 4 cut(s) 421, 950, 969, 1277
Hsp92II CATG 8 cut(s) 29, 45, 113, 902, 914, 1148, 1171, 1370
Ksp22I TGATCA 3 cut(s) 763, 1174, 1369
KspAI GTTAAC 1 cut(s) 1393
Kzo9I GATC 7 cut(s) 295, 534, 642, 763, 1174, 1351, 1369
LmnI GCTCC 4 cut(s) 19, 153, 236, 919
Lsp1109I GCAGC 7 cut(s) 421, 463, 1204, 1321, 1321, 1324, 1347
LweI GCATC 3 cut(s) 24, 54, 793
MaeI CTAG 3 cut(s) 188, 410, 1283
MaeIII GTNAC 1 cut(s) 1158
MalI GATC 7 cut(s) 297, 536, 644, 765, 1176, 1353, 1371
MboI GATC 7 cut(s) 295, 534, 642, 763, 1174, 1351, 1369
MboII GAAGA 4 cut(s) 290, 1250, 1307, 1310
MfeI CAATTG 1 cut(s) 1083
MhlI GDGCHC 3 cut(s) 1056, 1077, 1094
MlsI TGGCCA 2 cut(s) 57, 95
MluCI AATT 5 cut(s) 720, 961, 1065, 1083, 1136
MluNI TGGCCA 2 cut(s) 57, 95
MlyI GAGTC 2 cut(s) 942, 1123
MnlI CCTC 7 cut(s) 216, 219, 235, 624, 768, 1250, 1272
Mox20I TGGCCA 2 cut(s) 57, 95
MroXI GAANNNNTTC 1 cut(s) 894
MscI TGGCCA 2 cut(s) 57, 95
MseI TTAA 5 cut(s) 15, 579, 881, 1392, 1401
MslI CAYNNNNRTG 1 cut(s) 529
Msp20I TGGCCA 2 cut(s) 57, 95
MspI CCGG 2 cut(s) 230, 341
MspR9I CCNGG 2 cut(s) 771, 841
MunI CAATTG 1 cut(s) 1083
Mva1269I GAATGC 2 cut(s) 1192, 1385
MvaI CCWGG 2 cut(s) 771, 841
MwoI GCNNNNNNNGC 3 cut(s) 829, 1141, 1331
NcoI CCATGG 1 cut(s) 41
NdeII GATC 7 cut(s) 295, 534, 642, 763, 1174, 1351, 1369
NheI GCTAGC 1 cut(s) 1282
NlaIII CATG 8 cut(s) 29, 45, 113, 902, 914, 1148, 1171, 1370
NlaIV GGNNCC 6 cut(s) 149, 216, 238, 457, 1053, 1076
NmeAIII GCCGAG 1 cut(s) 265
PagI TCATGA 1 cut(s) 898
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PctI GAATGC 2 cut(s) 1192, 1385
PdmI GAANNNNTTC 1 cut(s) 894
PfeI GAWTC 2 cut(s) 670, 739
PflMI CCANNNNNTGG 1 cut(s) 1085
PkrI GCNGC 7 cut(s) 436, 478, 1219, 1311, 1336, 1339, 1362
PleI GAGTC 2 cut(s) 942, 1123
PpsI GAGTC 2 cut(s) 942, 1123
Psp6I CCWGG 2 cut(s) 769, 839
PspGI CCWGG 2 cut(s) 769, 839
PspN4I GGNNCC 6 cut(s) 149, 216, 238, 457, 1053, 1076
PspPI GGNCC 1 cut(s) 455
PstI CTGCAG 1 cut(s) 1342
RsaI GTAC 5 cut(s) 258, 264, 676, 713, 753
RsaNI GTAC 5 cut(s) 257, 263, 675, 712, 752
RseI CAYNNNNRTG 1 cut(s) 529
SalI GTCGAC 1 cut(s) 380
SaqAI TTAA 5 cut(s) 15, 579, 881, 1392, 1401
SatI GCNGC 7 cut(s) 435, 477, 1218, 1310, 1335, 1338, 1361
Sau3AI GATC 7 cut(s) 295, 534, 642, 763, 1174, 1351, 1369
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 2 cut(s) 942, 1123
ScrFI CCNGG 2 cut(s) 771, 841
SduI GDGCHC 3 cut(s) 1056, 1077, 1094
SfaNI GCATC 3 cut(s) 24, 54, 793
SfcI CTRYAG 2 cut(s) 84, 1338
SmiMI CAYNNNNRTG 1 cut(s) 529
Sse9I AATT 5 cut(s) 720, 961, 1065, 1083, 1136
SspMI CTAG 3 cut(s) 188, 410, 1283
StyD4I CCNGG 2 cut(s) 769, 839
StyI CCWWGG 3 cut(s) 41, 90, 96
TaaI ACNGT 2 cut(s) 270, 491
TaqI TCGA 4 cut(s) 125, 141, 252, 381
TasI AATT 5 cut(s) 720, 961, 1065, 1083, 1136
TatI WGTACW 2 cut(s) 711, 751
TfiI GAWTC 2 cut(s) 670, 739
Tru1I TTAA 5 cut(s) 15, 579, 881, 1392, 1401
Tru9I TTAA 5 cut(s) 15, 579, 881, 1392, 1401
TscAI CASTG 8 cut(s) 253, 377, 436, 478, 688, 741, 751, 1281
TseI GCWGC 7 cut(s) 434, 476, 1217, 1309, 1334, 1337, 1360
TspDTI ATGAA 9 cut(s) 14, 98, 169, 313, 585, 887, 993, 1091, 1156
TspRI CASTG 8 cut(s) 253, 377, 436, 478, 688, 741, 751, 1281
Van91I CCANNNNNTGG 1 cut(s) 1085
XapI RAATTY 1 cut(s) 1065
XmiI GTMKAC 1 cut(s) 381
XmnI GAANNNNTTC 1 cut(s) 894
XspI CTAG 3 cut(s) 188, 410, 1283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.