Rh1AG267800

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000733
Physical Location & Seq
Forward (+)
49503049 .. 49503420
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG267800.1

Sequence Viewer

Length: 372 bp
ATGGCAAAAGAGCTTCATGTTGTGATTCTTCCGTGGTCTGCTTTTGGCCATATCATCCCTTTGATTCAACTCTCTATAGCCTTAGCAAAAGCCAAGATTCATGTCTCCTTCATATCTACCCCCAAAAACATCCAAAGGCTCCCTAAAATCCCACCTGAGTTGCAATCTCACATAACAATAGTGCCTTTTCCTTGGCCAATTTTGGATGCTGCAGATCGGCTGTTGCCTGAAGGAGCCGAGGCCACGGTGGACATACCTTTTGAGAAAATGGACGACTTGAAGTTTGCATTTGATCTTCTACGACAACCCTTTAAGCAATTCATTGCTGATCAAGTGCCGGATTGGATCATCACCGATTTTGCTGCCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

123

Amino Acids

13.92

Weight (kDa)

5.89

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 2 cut(s) 46, 194
AcuI CTGAAG 1 cut(s) 249
AgsI TTSAA 2 cut(s) 68, 280
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 353
AoxI GGCC 3 cut(s) 46, 194, 240
ApeKI GCWGC 2 cut(s) 209, 362
ArsI GACNNNNNNTTYG 4 cut(s) 242, 266, 274, 298
AsuHPI GGTGA 1 cut(s) 343
BalI TGGCCA 2 cut(s) 48, 196
BbvI GCAGC 2 cut(s) 196, 349
BcgI CGANNNNNNTGC 1 cut(s) 344
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 1 cut(s) 370
BfmI CTRYAG 2 cut(s) 75, 210
BisI GCNGC 2 cut(s) 210, 363
BlsI GCNGC 2 cut(s) 211, 364
BmiI GGNNCC 2 cut(s) 140, 235
BmsI GCATC 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 82
BsaJI CCNNGG 4 cut(s) 32, 191, 237, 243
Bse3DI GCAATG 1 cut(s) 321
BseDI CCNNGG 4 cut(s) 32, 191, 237, 243
BseGI GGATG 3 cut(s) 54, 129, 211
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 196, 349
BshFI GGCC 3 cut(s) 48, 196, 242
BsiSI CCGG 1 cut(s) 338
BsmAI GTCTC 1 cut(s) 109
BsnI GGCC 3 cut(s) 48, 196, 242
Bsp143I GATC 4 cut(s) 214, 292, 328, 345
BspANI GGCC 3 cut(s) 48, 196, 242
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 140, 235
BspMAI CTGCAG 1 cut(s) 214
BspPI GGATC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 321
BssECI CCNNGG 4 cut(s) 32, 191, 237, 243
BssMI GATC 4 cut(s) 214, 292, 328, 345
BssT1I CCWWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 247
BstDEI CTNAG 2 cut(s) 82, 156
BstDSI CCRYGG 2 cut(s) 32, 243
BstF5I GGATG 3 cut(s) 54, 129, 211
BstKTI GATC 4 cut(s) 217, 295, 331, 348
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 4 cut(s) 214, 292, 328, 345
BstSFI CTRYAG 2 cut(s) 75, 210
BstV1I GCAGC 2 cut(s) 196, 349
BsuRI GGCC 3 cut(s) 48, 196, 242
BtgI CCRYGG 2 cut(s) 32, 243
BtsCI GGATG 3 cut(s) 54, 129, 211
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 2 cut(s) 17, 101
CviJI RGCY 9 cut(s) 13, 48, 80, 92, 139, 196, 220, 236, 242
CviKI_1 RGCY 9 cut(s) 13, 48, 80, 92, 139, 196, 220, 236, 242
DdeI CTNAG 2 cut(s) 82, 156
DpnI GATC 4 cut(s) 216, 294, 330, 347
DpnII GATC 4 cut(s) 214, 292, 328, 345
EaeI YGGCCR 2 cut(s) 46, 194
Eco130I CCWWGG 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 2 cut(s) 20, 104
FaiI YATR 7 cut(s) 18, 51, 77, 102, 113, 173, 254
FatI CATG 2 cut(s) 16, 100
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 2 cut(s) 210, 363
FokI GGATG 3 cut(s) 41, 116, 218
Fsp4HI GCNGC 2 cut(s) 210, 363
FspBI CTAG 1 cut(s) 370
GluI GCNGC 2 cut(s) 210, 363
HaeIII GGCC 3 cut(s) 48, 196, 242
HapII CCGG 1 cut(s) 338
Hin1II CATG 2 cut(s) 20, 104
HinfI GANTC 3 cut(s) 25, 64, 97
HpaII CCGG 1 cut(s) 338
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 118, 224
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 3 cut(s) 163, 212, 287
HpyF3I CTNAG 2 cut(s) 82, 156
Hsp92II CATG 2 cut(s) 20, 104
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 4 cut(s) 214, 292, 328, 345
LmnI GCTCC 2 cut(s) 144, 233
LpnPI CCDG 3 cut(s) 168, 240, 351
Lsp1109I GCAGC 2 cut(s) 196, 349
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 370
MalI GATC 4 cut(s) 216, 294, 330, 347
MboI GATC 4 cut(s) 214, 292, 328, 345
MboII GAAGA 2 cut(s) 20, 287
MlsI TGGCCA 2 cut(s) 48, 196
MluCI AATT 2 cut(s) 198, 317
MluNI TGGCCA 2 cut(s) 48, 196
MnlI CCTC 1 cut(s) 232
Mox20I TGGCCA 2 cut(s) 48, 196
MscI TGGCCA 2 cut(s) 48, 196
MseI TTAA 1 cut(s) 312
Msp20I TGGCCA 2 cut(s) 48, 196
MspI CCGG 1 cut(s) 338
NdeII GATC 4 cut(s) 214, 292, 328, 345
NlaIII CATG 2 cut(s) 20, 104
NlaIV GGNNCC 2 cut(s) 140, 235
NmeAIII GCCGAG 1 cut(s) 262
PfeI GAWTC 3 cut(s) 25, 64, 97
PkrI GCNGC 2 cut(s) 211, 364
PspN4I GGNNCC 2 cut(s) 140, 235
PstI CTGCAG 1 cut(s) 214
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 2 cut(s) 210, 363
Sau3AI GATC 4 cut(s) 214, 292, 328, 345
SetI ASST 3 cut(s) 15, 157, 259
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 2 cut(s) 75, 210
Sse9I AATT 2 cut(s) 198, 317
SspMI CTAG 1 cut(s) 370
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 247
TasI AATT 2 cut(s) 198, 317
TfiI GAWTC 3 cut(s) 25, 64, 97
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TseI GCWGC 2 cut(s) 209, 362
TspDTI ATGAA 4 cut(s) 5, 89, 100, 310
TspGWI ACGGA 1 cut(s) 21
XspI CTAG 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.