RLG00000027973

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000733
Physical Location & Seq
Reverse (-)
17382867 .. 17384285
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027973

Sequence Viewer

Length: 1419 bp
ATGGCGAAAGAGCTTCATGTTGTGATGCTTCCATGGTCTGCATTTGGCCATATTATGCCCTTCTTTCAACTCTCCATAGCCTTGGCCAAAGCCAAAGTTCATGTCTCCTTCATATCAACCCCAAGAAACATTCAAAGGCTCCCCAAAATCTCATCTGATTTACAACCTTTCATACACCTAGTCCCCATTCCATTTCCTCCTCTGGAACCTGACTTCTTGCCTGAAGGAGCAGAGGCCAGTATCGACGTAACCTTCGAAAAAATGGACAACTTACAGATCGCGTATGATCTTCTCCAGAAACCCATCAAGCAATTCATTGCAGATCAAATGCCTGACTGGATAGTACCCGATTTCTCTGCTCATTGGGTGGTGAACATTGCCAAAGAGTATGGTGTTCCACTAGTCTACTTCTCTGCTTTCTCAGCAGCTAGCAGTGTATTCTTTGGCCCCCCGGAAAATCTCTCCGGTGTGAACAGAAACTACGCTCTTCCATCACCAAAAAGCTTGACATCTCCACCAGAATGGATAACTTTTCCGTCTTTGGTGGCATTCAAGGAGTATGAAGCAATTTATGTTCCTCAAGGGTTTTGGGGTGCAAATAGTACTGGAATAAGTGGAGCTTCTAGGCTTGCCAAGATCATATCAGCAAGTCAAGCTTTGGCAATTCGTACTTGTAATGAGATTGAAGGAGACTACTTGGAGGTGTACAAGAAAATTACTGGAAAGCCAGTGATTCCCATTGGTGTGCTTCCTCCAGATCAACCTGGGAAAAGAGCAATAGGGGAAATAAACTCCGATGGGGCTATGTTTGATTGGCTTGATAAGCAAAAACCGAGGTCAGTGGTGTTTGTGGGTTTTGGGAGTGAGTGTAAGCTGAGCAAAGAACAAGTTCATGAGATAGCTCATGGGTTGGAGCTATCAGAATTGCCATTTATTTGGGGACTCAGAAAACCCAATGCAGCTAACAGTGATGAAGTCGATGATTTTCTGCCTTTAGGTTTTGTTGACAGAACATCAGAGAAAGGGCTAGTTTGCTTTGGATGGGTGCCCCAATTGGAAATTTTGGGGCACCCATCAATTGGGGGCTCTTTGTTTCACTCTGGATGGGGTTCTGTGATTGAGACTCTGCAATTTGGTCATTGCCTTGTGTTGTTGCCCTTCATTGTTGATCAGCCTTTGAATGCAAGGCTTTTGGTGGAGAAGGGTCTGGCTGCCGAAGTGAAGCGCAACGAAGACGGGTCGCTTTGTAGAGATGAAATAGCAAAAGCACTGAGGCTAGCAATGGTGGACGAGGAAGGAGAGCAGCTGAGAACCAATGCAAGGAAAGTTTCTGCAGTTTTTGGAGATCAGAAGCTGCACCAAGACCACTACATTGGTTCATTTGTTAGTTATCTCAAAAATAACGTTGCAAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

473

Amino Acids

52.28

Weight (kDa)

5.79

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 279 - 451 2e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1045, 1068
AccB7I CCANNNNNTGG 1 cut(s) 1079
AccI GTMKAC 1 cut(s) 405
AccII CGCG 1 cut(s) 281
AclI AACGTT 1 cut(s) 1404
AcoI YGGCCR 2 cut(s) 46, 84
AcsI RAATTY 1 cut(s) 1059
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 4 cut(s) 345, 604, 670, 707
AfiI CCNNNNNNNGG 2 cut(s) 1079, 1320
AgsI TTSAA 5 cut(s) 68, 134, 553, 686, 1180
AhlI ACTAGT 1 cut(s) 400
AjnI CCWGG 1 cut(s) 763
Alw26I GTCTC 3 cut(s) 109, 684, 1115
AlwNI CAGNNNCTG 1 cut(s) 1354
AoxI GGCC 4 cut(s) 46, 84, 234, 445
ApeKI GCWGC 5 cut(s) 425, 959, 1211, 1303, 1354
ApoI RAATTY 1 cut(s) 1059
ArsI GACNNNNNNTTYG 4 cut(s) 87, 119, 236, 268
Asp700I GAANNNNTTC 1 cut(s) 888
AspLEI GCGC 1 cut(s) 1227
AspS9I GGNCC 1 cut(s) 446
AsuC2I CCSGG 1 cut(s) 452
AsuHPI GGTGA 2 cut(s) 382, 486
AsuII TTCGAA 1 cut(s) 255
AsuNHI GCTAGC 2 cut(s) 428, 1276
BaeGI GKGCMC 2 cut(s) 1050, 1071
BalI TGGCCA 2 cut(s) 48, 86
BanI GGYRCC 2 cut(s) 1045, 1068
BanII GRGCYC 1 cut(s) 1088
BbsI GAAGAC 1 cut(s) 1239
BbvI GCAGC 5 cut(s) 437, 971, 1198, 1315, 1341
BccI CCATC 6 cut(s) 311, 499, 791, 1035, 1081, 1098
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 1 cut(s) 765
BclI TGATCA 1 cut(s) 1168
BcnI CCSGG 1 cut(s) 452
BcoDI GTCTC 3 cut(s) 109, 684, 1115
BcuI ACTAGT 1 cut(s) 400
BfaI CTAG 6 cut(s) 179, 401, 429, 624, 1028, 1277
BfmI CTRYAG 1 cut(s) 1332
BisI GCNGC 5 cut(s) 426, 960, 1212, 1304, 1355
BlpI GCTNAGC 1 cut(s) 875
BlsI GCNGC 5 cut(s) 427, 961, 1213, 1305, 1356
BmcAI AGTACT 1 cut(s) 604
Bme1390I CCNGG 2 cut(s) 452, 765
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 5 cut(s) 140, 207, 448, 1047, 1070
BmrFI CCNGG 2 cut(s) 452, 765
BmsI GCATC 1 cut(s) 15
BmtI GCTAGC 2 cut(s) 432, 1280
BpiI GAAGAC 1 cut(s) 1239
BpmI CTGGAG 2 cut(s) 278, 738
Bpu1102I GCTNAGC 1 cut(s) 875
Bpu14I TTCGAA 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 564
BpuMI CCSGG 1 cut(s) 452
BsaJI CCNNGG 5 cut(s) 32, 81, 450, 764, 833
BsaWI WCCGGW 1 cut(s) 464
BsaXI ACNNNNNCTCC 2 cut(s) 853, 883
Bsc4I CCNNNNNNNGG 2 cut(s) 1079, 1320
Bse1I ACTGG 5 cut(s) 237, 341, 610, 724, 728
Bse3DI GCAATG 4 cut(s) 315, 375, 1138, 1287
BseBI CCWGG 1 cut(s) 765
BseDI CCNNGG 5 cut(s) 32, 81, 450, 764, 833
BseGI GGATG 2 cut(s) 1046, 1109
BseLI CCNNNNNNNGG 2 cut(s) 1079, 1320
BseMI GCAATG 4 cut(s) 315, 375, 1138, 1287
BseMII CTCAG 5 cut(s) 435, 866, 958, 1262, 1298
BseNI ACTGG 5 cut(s) 237, 341, 610, 724, 728
BseRI GAGGAG 1 cut(s) 189
BseSI GKGCMC 2 cut(s) 1050, 1071
BseXI GCAGC 5 cut(s) 437, 971, 1198, 1315, 1341
BsgI GTGCAG 1 cut(s) 1340
Bsh1236I CGCG 1 cut(s) 281
BshFI GGCC 4 cut(s) 48, 86, 236, 447
BshNI GGYRCC 2 cut(s) 1045, 1068
BsiSI CCGG 2 cut(s) 452, 465
BslFI GGGAC 2 cut(s) 167, 954
BslI CCNNNNNNNGG 2 cut(s) 1079, 1320
BsmAI GTCTC 3 cut(s) 109, 684, 1115
BsmFI GGGAC 2 cut(s) 167, 954
BsmI GAATGC 2 cut(s) 548, 1186
BsnI GGCC 4 cut(s) 48, 86, 236, 447
Bsp119I TTCGAA 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 1050, 1071, 1088
Bsp1407I TGTACA 1 cut(s) 705
Bsp143I GATC 7 cut(s) 276, 286, 322, 636, 757, 1168, 1345
Bsp1720I GCTNAGC 1 cut(s) 875
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 4 cut(s) 48, 86, 236, 447
BspCNI CTCAG 5 cut(s) 434, 867, 957, 1263, 1299
BspFNI CGCG 1 cut(s) 281
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 5 cut(s) 140, 207, 448, 1047, 1070
BspMAI CTGCAG 1 cut(s) 1336
BspOI GCTAGC 2 cut(s) 432, 1280
BspQI GCTCTTC 1 cut(s) 492
BspT104I TTCGAA 1 cut(s) 255
BspT107I GGYRCC 2 cut(s) 1045, 1068
BsrDI GCAATG 4 cut(s) 315, 375, 1138, 1287
BsrGI TGTACA 1 cut(s) 705
BsrI ACTGG 5 cut(s) 237, 341, 610, 724, 728
BssECI CCNNGG 5 cut(s) 32, 81, 450, 764, 833
BssMI GATC 7 cut(s) 276, 286, 322, 636, 757, 1168, 1345
BssT1I CCWWGG 2 cut(s) 32, 81
Bst2UI CCWGG 1 cut(s) 765
Bst4CI ACNGT 1 cut(s) 968
Bst6I CTCTTC 1 cut(s) 492
BstAUI TGTACA 1 cut(s) 705
BstBI TTCGAA 1 cut(s) 255
BstC8I GCNNGC 3 cut(s) 430, 630, 1278
BstDEI CTNAG 5 cut(s) 421, 875, 944, 1271, 1307
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 1046, 1109
BstFNI CGCG 1 cut(s) 281
BstHHI GCGC 1 cut(s) 1227
BstKTI GATC 7 cut(s) 279, 289, 325, 639, 760, 1171, 1348
BstMAI GTCTC 3 cut(s) 109, 684, 1115
BstMBI GATC 7 cut(s) 276, 286, 322, 636, 757, 1168, 1345
BstMWI GCNNNNNNNGC 3 cut(s) 422, 653, 823
BstNI CCWGG 1 cut(s) 765
BstSCI CCNGG 2 cut(s) 450, 763
BstSFI CTRYAG 1 cut(s) 1332
BstSLI GKGCMC 2 cut(s) 1050, 1071
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 5 cut(s) 437, 971, 1198, 1315, 1341
BstV2I GAAGAC 1 cut(s) 1239
BstXI CCANNNNNNTGG 4 cut(s) 82, 522, 936, 1373
BsuRI GGCC 4 cut(s) 48, 86, 236, 447
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 2 cut(s) 1046, 1109
BtsI GCAGTG 1 cut(s) 439
BtsIMutI CAGTG 5 cut(s) 439, 735, 846, 973, 1268
Cac8I GCNNGC 3 cut(s) 430, 630, 1278
CaiI CAGNNNCTG 1 cut(s) 1354
CciI TCATGA 1 cut(s) 892
CfoI GCGC 1 cut(s) 1227
Cfr13I GGNCC 1 cut(s) 446
Csp6I GTAC 4 cut(s) 344, 603, 669, 706
CviAII CATG 5 cut(s) 17, 33, 101, 893, 905
CviQI GTAC 4 cut(s) 344, 603, 669, 706
DdeI CTNAG 5 cut(s) 421, 875, 944, 1271, 1307
DpnI GATC 7 cut(s) 278, 288, 324, 638, 759, 1170, 1347
DpnII GATC 7 cut(s) 276, 286, 322, 636, 757, 1168, 1345
EaeI YGGCCR 2 cut(s) 46, 84
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Eco130I CCWWGG 2 cut(s) 32, 81
Eco24I GRGCYC 1 cut(s) 1088
Eco57I CTGAAG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 763
EcoT14I CCWWGG 2 cut(s) 32, 81
EcoT38I GRGCYC 1 cut(s) 1088
ErhI CCWWGG 2 cut(s) 32, 81
FaeI CATG 5 cut(s) 20, 36, 104, 896, 908
FalI AAGNNNNNCTT 4 cut(s) 604, 636, 640, 672
FaqI GGGAC 2 cut(s) 167, 954
FatI CATG 5 cut(s) 16, 32, 100, 892, 904
FbaI TGATCA 1 cut(s) 1168
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 5 cut(s) 426, 960, 1212, 1304, 1355
FokI GGATG 2 cut(s) 1053, 1116
FriOI GRGCYC 1 cut(s) 1088
Fsp4HI GCNGC 5 cut(s) 426, 960, 1212, 1304, 1355
FspBI CTAG 6 cut(s) 179, 401, 429, 624, 1028, 1277
GlaI GCGC 1 cut(s) 1226
GluI GCNGC 5 cut(s) 426, 960, 1212, 1304, 1355
GsuI CTGGAG 2 cut(s) 278, 738
HaeIII GGCC 4 cut(s) 48, 86, 236, 447
HapII CCGG 2 cut(s) 452, 465
HhaI GCGC 1 cut(s) 1227
Hin1II CATG 5 cut(s) 20, 36, 104, 896, 908
Hin6I GCGC 1 cut(s) 1225
HinP1I GCGC 1 cut(s) 1225
HincII GTYRAC 1 cut(s) 1006
HindII GTYRAC 1 cut(s) 1006
HindIII AAGCTT 2 cut(s) 502, 654
HinfI GANTC 3 cut(s) 733, 942, 1123
HpaII CCGG 2 cut(s) 452, 465
HphI GGTGA 2 cut(s) 382, 486
Hpy166II GTNNAC 6 cut(s) 373, 406, 472, 706, 1006, 1288
Hpy188I TCNGA 6 cut(s) 157, 796, 922, 947, 1018, 1350
Hpy188III TCNNGA 5 cut(s) 203, 295, 755, 893, 1101
Hpy8I GTNNAC 6 cut(s) 373, 406, 472, 706, 1006, 1288
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 8 cut(s) 70, 118, 218, 262, 680, 1168, 1195, 1289
HpyCH4III ACNGT 1 cut(s) 968
HpyCH4IV ACGT 2 cut(s) 246, 1404
HpyF10VI GCNNNNNNNGC 3 cut(s) 422, 653, 823
HpyF3I CTNAG 5 cut(s) 421, 875, 944, 1271, 1307
HpySE526I ACGT 2 cut(s) 246, 1404
Hsp92II CATG 5 cut(s) 20, 36, 104, 896, 908
HspAI GCGC 1 cut(s) 1225
Ksp22I TGATCA 1 cut(s) 1168
Kzo9I GATC 7 cut(s) 276, 286, 322, 636, 757, 1168, 1345
LguI GCTCTTC 1 cut(s) 492
LmnI GCTCC 4 cut(s) 144, 227, 617, 913
Lsp1109I GCAGC 5 cut(s) 437, 971, 1198, 1315, 1341
LweI GCATC 1 cut(s) 15
MaeI CTAG 6 cut(s) 179, 401, 429, 624, 1028, 1277
MaeII ACGT 2 cut(s) 246, 1404
MaeIII GTNAC 1 cut(s) 247
MalI GATC 7 cut(s) 278, 288, 324, 638, 759, 1170, 1347
MboI GATC 7 cut(s) 276, 286, 322, 636, 757, 1168, 1345
MboII GAAGA 3 cut(s) 281, 479, 1244
MfeI CAATTG 2 cut(s) 1052, 1077
MhlI GDGCHC 3 cut(s) 1050, 1071, 1088
MlsI TGGCCA 2 cut(s) 48, 86
MluCI AATT 9 cut(s) 311, 567, 663, 714, 923, 1052, 1059, 1077, 1130
MluNI TGGCCA 2 cut(s) 48, 86
MlyI GAGTC 2 cut(s) 936, 1117
MmeI TCCRAC 1 cut(s) 891
Mox20I TGGCCA 2 cut(s) 48, 86
MroXI GAANNNNTTC 1 cut(s) 888
MscI TGGCCA 2 cut(s) 48, 86
MslI CAYNNNNRTG 2 cut(s) 520, 743
Msp20I TGGCCA 2 cut(s) 48, 86
MspA1I CMGCKG 1 cut(s) 1306
MspI CCGG 2 cut(s) 452, 465
MspR9I CCNGG 2 cut(s) 452, 765
MunI CAATTG 2 cut(s) 1052, 1077
Mva1269I GAATGC 2 cut(s) 548, 1186
MvaI CCWGG 1 cut(s) 765
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 3 cut(s) 422, 653, 823
NciI CCSGG 1 cut(s) 452
NcoI CCATGG 1 cut(s) 32
NdeII GATC 7 cut(s) 276, 286, 322, 636, 757, 1168, 1345
NheI GCTAGC 2 cut(s) 428, 1276
NlaIII CATG 5 cut(s) 20, 36, 104, 896, 908
NlaIV GGNNCC 5 cut(s) 140, 207, 448, 1047, 1070
NspV TTCGAA 1 cut(s) 255
PagI TCATGA 1 cut(s) 892
PciSI GCTCTTC 1 cut(s) 492
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PctI GAATGC 2 cut(s) 548, 1186
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 1 cut(s) 733
PflMI CCANNNNNTGG 1 cut(s) 1079
PkrI GCNGC 5 cut(s) 427, 961, 1213, 1305, 1356
PleI GAGTC 2 cut(s) 936, 1117
PpsI GAGTC 2 cut(s) 936, 1117
Psp1406I AACGTT 1 cut(s) 1404
Psp6I CCWGG 1 cut(s) 763
PspGI CCWGG 1 cut(s) 763
PspN4I GGNNCC 5 cut(s) 140, 207, 448, 1047, 1070
PspPI GGNCC 1 cut(s) 446
PsrI GAACNNNNNNTAC 2 cut(s) 464, 496
PstI CTGCAG 1 cut(s) 1336
PstNI CAGNNNCTG 1 cut(s) 1354
PvuII CAGCTG 1 cut(s) 1306
RsaI GTAC 4 cut(s) 345, 604, 670, 707
RsaNI GTAC 4 cut(s) 344, 603, 669, 706
RseI CAYNNNNRTG 2 cut(s) 520, 743
SapI GCTCTTC 1 cut(s) 492
SatI GCNGC 5 cut(s) 426, 960, 1212, 1304, 1355
Sau3AI GATC 7 cut(s) 276, 286, 322, 636, 757, 1168, 1345
Sau96I GGNCC 1 cut(s) 446
ScaI AGTACT 1 cut(s) 604
SchI GAGTC 2 cut(s) 936, 1117
ScrFI CCNGG 2 cut(s) 452, 765
SduI GDGCHC 3 cut(s) 1050, 1071, 1088
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 1332
SfuI TTCGAA 1 cut(s) 255
SmiMI CAYNNNNRTG 2 cut(s) 520, 743
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
SpeI ACTAGT 1 cut(s) 400
Sse9I AATT 9 cut(s) 311, 567, 663, 714, 923, 1052, 1059, 1077, 1130
SspMI CTAG 6 cut(s) 179, 401, 429, 624, 1028, 1277
StyD4I CCNGG 2 cut(s) 450, 763
StyI CCWWGG 2 cut(s) 32, 81
TaaI ACNGT 1 cut(s) 968
TaiI ACGT 2 cut(s) 249, 1407
TaqI TCGA 3 cut(s) 243, 255, 978
TasI AATT 9 cut(s) 311, 567, 663, 714, 923, 1052, 1059, 1077, 1130
TatI WGTACW 2 cut(s) 602, 705
TfiI GAWTC 1 cut(s) 733
TscAI CASTG 5 cut(s) 439, 735, 846, 973, 1275
TseI GCWGC 5 cut(s) 425, 959, 1211, 1303, 1354
TspGWI ACGGA 1 cut(s) 525
TspRI CASTG 5 cut(s) 439, 735, 846, 973, 1275
Van91I CCANNNNNTGG 1 cut(s) 1079
XapI RAATTY 1 cut(s) 1059
XmiI GTMKAC 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 6 cut(s) 179, 401, 429, 624, 1028, 1277
ZrmI AGTACT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.