MD00G1112100.v1.1

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000733
Physical Location & Seq
Forward (+)
23613403 .. 23614812
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1112100.v1.1.491

Sequence Viewer

Length: 1410 bp
ATGGGGAAAAATCTGAGAGTTGTGATGCTTCCATATTCCGCCTTCGGCCACATAATGCCTTACTTTCAACTCTCCATTGCCTTGGCAAAGTCCAACGTTCATGTCTATTTCATATCCACCCCAAGAAACATCCAGAGGCTTCCCAAAATTCCATCTGATTTGAACCCCTTTATCCATTTAGTCCCCATCCCATTTCCTCCGCTGGATCCCGACTTCTTGCCGGAAGGAGCGGAGGCCACGGTGGATCTACCCTTCGAAAAACTTGACAACTTGAAGGTTGCATATGATCTACTGCAGCAACCCCTTAAGCAGTTCATTGGGGAGGAGTTGCCGGATTGGATACTATCTGATTTTGCAGCTCATTGGGTGGTCGACATTGCCAAAGAGTATGGTGTTTCAATTGCGTGGTTCTCTCCTTTCTCTGCTGCTTGCAATGTGTTTTTCGGCTCAATGGAAAACCTCTTGGGTACGAATAGAAATCATGCTATCCCAACACCGGAAAGTCTAACTTCACCCCCGGATTGGGTTAGTTTTCCTTCATCGGTTGCGTATAGAGACTTTGTGGCGCCTTATGTGGCGCGAGGCTTTTTTGGAGTCAATAAAAGTGGGATAAGTGATTCTGCAAGGCTTGCCAAGATTTTATCTGCAAGTCAAGCGTTAGCCATTCGAACTTGCGATGAGGTAGAAGGAGAATATTTGGAGGTTTTCAAGAAAATTACAGGAAAGCCTGTGATTTCCACAGGTTTGCTTCTTCCGGATCTACCTGCACAGAGGGGAAAAGGGGGAATTTCTACCAATGATGGGATCTTTGAATGGCTTGATAAGCGAAAAAACAAGTCAGTTGTGTTTGTAGGGTTTGGGAGTGAGTGTAAGTTGAGTAAAGAGCAAGTCTTTGAGATAGCTTCTGGGCTGGAGTTATCAGGACTCCCATTTCTCTGGGCACTCAGAAACCCCAACTGGGCAAATAGTGATGCTGATGCTTTACCTCCTGGTTTTGCTGAGCGAACATCAGAGAGAGGACTTGTTTGTTTCGGGTGGGTGCCCCAGATCGAGATTCTGGGGCACCCGTCAGTTGGTGGTTCTTTGTTTCACTCTGGATGGGGATCCGTGATTGAAACTCTGCAATTTGGGCATGTTCTTGTTGTGCTACCATTGATTATTGATCAGCCTCTGAATGCAAGGCTTCTGGAAGACAAGGGTCTGGCTGTGGAAGTGAAATGCAGCGGAGATGGGTCGTTTAGTAAAGATGAGATAGCCAAAACCCTAAGACATGCAATGGTGGAAGAGGAAGGAGAGCAGCTGAGATCCAATGCAAGGAAAGCTGCAGCTGTTTTTGGTGATCACAAGCTGCACCAAGACCACTACATCGGGCAGTTTGTCAACTTTCTAAAAAGTACGGTAGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

470

Amino Acids

51.6

Weight (kDa)

5.69

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 278 - 424 1.7e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 772
AccB1I GGYRCC 3 cut(s) 565, 1039, 1062
AccBSI CCGCTC 1 cut(s) 230
AccI GTMKAC 1 cut(s) 372
AccII CGCG 1 cut(s) 580
AccIII TCCGGA 1 cut(s) 754
AciI CCGC 4 cut(s) 39, 200, 230, 1224
AclI AACGTT 1 cut(s) 96
AclWI GGATC 8 cut(s) 200, 213, 252, 765, 812, 1098, 1111, 1299
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 2 cut(s) 147, 786
AcyI GRCGYC 1 cut(s) 566
AfaI GTAC 2 cut(s) 469, 1396
AfiI CCNNNNNNNGG 7 cut(s) 496, 522, 523, 801, 958, 1073, 1314
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 7 cut(s) 68, 163, 274, 399, 709, 812, 1115
AjnI CCWGG 1 cut(s) 988
AluBI AGCT 6 cut(s) 359, 902, 1300, 1322, 1328, 1348
AluI AGCT 6 cut(s) 359, 902, 1300, 1322, 1328, 1348
Alw26I GTCTC 1 cut(s) 549
AlwI GGATC 8 cut(s) 200, 213, 252, 765, 812, 1098, 1111, 1299
AlwNI CAGNNNCTG 1 cut(s) 1171
Aor13HI TCCGGA 1 cut(s) 754
AoxI GGCC 2 cut(s) 46, 234
ApeKI GCWGC 9 cut(s) 295, 356, 425, 1221, 1297, 1322, 1325, 1348, 1403
ApoI RAATTY 2 cut(s) 147, 786
AspLEI GCGC 2 cut(s) 568, 580
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 2 cut(s) 504, 1349
AsuII TTCGAA 2 cut(s) 255, 667
BaeGI GKGCMC 3 cut(s) 943, 1044, 1065
BamHI GGATCC 2 cut(s) 205, 1103
BanI GGYRCC 3 cut(s) 565, 1039, 1062
BbsI GAAGAC 1 cut(s) 1197
BbvI GCAGC 8 cut(s) 307, 368, 412, 1233, 1309, 1309, 1335, 1337
BccI CCATC 5 cut(s) 160, 194, 794, 1092, 1223
BciT130I CCWGG 1 cut(s) 990
BciVI GTATCC 1 cut(s) 333
BclI TGATCA 2 cut(s) 1162, 1339
BcnI CCSGG 1 cut(s) 518
BcoDI GTCTC 1 cut(s) 549
BfmI CTRYAG 2 cut(s) 293, 1323
BfoI RGCGCY 1 cut(s) 569
BfrI CTTAAG 1 cut(s) 305
BfuAI ACCTGC 1 cut(s) 772
BfuI GTATCC 1 cut(s) 333
BisI GCNGC 9 cut(s) 296, 357, 426, 1222, 1298, 1323, 1326, 1349, 1404
BlpI GCTNAGC 1 cut(s) 999
BlsI GCNGC 9 cut(s) 297, 358, 427, 1223, 1299, 1324, 1327, 1350, 1405
Bme1390I CCNGG 2 cut(s) 518, 990
BmiI GGNNCC 5 cut(s) 207, 567, 1041, 1064, 1105
BmrFI CCNGG 2 cut(s) 518, 990
BmrI ACTGGG 1 cut(s) 967
BmsI GCATC 3 cut(s) 15, 961, 967
BmuI ACTGGG 1 cut(s) 967
BoxI GACNNNNGTC 1 cut(s) 1197
BpiI GAAGAC 1 cut(s) 1197
BpmI CTGGAG 1 cut(s) 932
Bpu1102I GCTNAGC 1 cut(s) 999
Bpu14I TTCGAA 2 cut(s) 255, 667
BpuMI CCSGG 1 cut(s) 518
BsaBI GATNNNNATC 1 cut(s) 1102
BsaHI GRCGYC 1 cut(s) 566
BsaJI CCNNGG 3 cut(s) 81, 237, 516
BsaWI WCCGGW 2 cut(s) 496, 754
BsaXI ACNNNNNCTCC 2 cut(s) 853, 883
Bsc4I CCNNNNNNNGG 7 cut(s) 496, 522, 523, 801, 958, 1073, 1314
Bse1I ACTGG 1 cut(s) 962
Bse3DI GCAATG 4 cut(s) 75, 375, 439, 1281
Bse8I GATNNNNATC 1 cut(s) 1102
BseAI TCCGGA 1 cut(s) 754
BseBI CCWGG 1 cut(s) 990
BseDI CCNNGG 3 cut(s) 81, 237, 516
BseGI GGATG 3 cut(s) 129, 186, 1103
BseJI GATNNNNATC 1 cut(s) 1102
BseLI CCNNNNNNNGG 7 cut(s) 496, 522, 523, 801, 958, 1073, 1314
BseMI GCAATG 4 cut(s) 75, 375, 439, 1281
BseMII CTCAG 4 cut(s) 5, 958, 990, 1292
BseNI ACTGG 1 cut(s) 962
BseRI GAGGAG 1 cut(s) 338
BseSI GKGCMC 3 cut(s) 943, 1044, 1065
BseXI GCAGC 8 cut(s) 307, 368, 412, 1233, 1309, 1309, 1335, 1337
BsgI GTGCAG 2 cut(s) 750, 1334
Bsh1236I CGCG 1 cut(s) 580
BshFI GGCC 2 cut(s) 48, 236
BshNI GGYRCC 3 cut(s) 565, 1039, 1062
BsiSI CCGG 5 cut(s) 221, 332, 497, 518, 755
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 7 cut(s) 496, 522, 523, 801, 958, 1073, 1314
BsmAI GTCTC 1 cut(s) 549
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 1180
BsnI GGCC 2 cut(s) 48, 236
Bsp119I TTCGAA 2 cut(s) 255, 667
Bsp1286I GDGCHC 3 cut(s) 943, 1044, 1065
Bsp13I TCCGGA 1 cut(s) 754
Bsp1720I GCTNAGC 1 cut(s) 999
BspACI CCGC 4 cut(s) 39, 200, 230, 1224
BspANI GGCC 2 cut(s) 48, 236
BspCNI CTCAG 4 cut(s) 6, 957, 991, 1293
BspEI TCCGGA 1 cut(s) 754
BspFNI CGCG 1 cut(s) 580
BspLI GGNNCC 5 cut(s) 207, 567, 1041, 1064, 1105
BspMAI CTGCAG 2 cut(s) 297, 1327
BspMI ACCTGC 1 cut(s) 772
BspPI GGATC 8 cut(s) 200, 213, 252, 765, 812, 1098, 1111, 1299
BspT104I TTCGAA 2 cut(s) 255, 667
BspT107I GGYRCC 3 cut(s) 565, 1039, 1062
BspTI CTTAAG 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 230
BsrDI GCAATG 4 cut(s) 75, 375, 439, 1281
BsrI ACTGG 1 cut(s) 962
BssECI CCNNGG 3 cut(s) 81, 237, 516
BssNI GRCGYC 1 cut(s) 566
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 990
Bst4CI ACNGT 2 cut(s) 241, 1399
Bst6I CTCTTC 1 cut(s) 1278
BstACI GRCGYC 1 cut(s) 566
BstAFI CTTAAG 1 cut(s) 305
BstAPI GCANNNNNTGC 1 cut(s) 629
BstBI TTCGAA 2 cut(s) 255, 667
BstC8I GCNNGC 2 cut(s) 430, 630
BstDEI CTNAG 5 cut(s) 14, 944, 999, 1265, 1301
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 3 cut(s) 129, 186, 1103
BstFNI CGCG 1 cut(s) 580
BstH2I RGCGCY 1 cut(s) 569
BstHHI GCGC 2 cut(s) 568, 580
BstMAI GTCTC 1 cut(s) 549
BstMWI GCNNNNNNNGC 5 cut(s) 629, 653, 823, 1129, 1319
BstNI CCWGG 1 cut(s) 990
BstNSI RCATGY 2 cut(s) 1136, 1274
BstPAI GACNNNNGTC 1 cut(s) 1197
BstSCI CCNGG 2 cut(s) 516, 988
BstSFI CTRYAG 2 cut(s) 293, 1323
BstSLI GKGCMC 3 cut(s) 943, 1044, 1065
BstUI CGCG 1 cut(s) 580
BstV1I GCAGC 8 cut(s) 307, 368, 412, 1233, 1309, 1309, 1335, 1337
BstV2I GAAGAC 1 cut(s) 1197
BstX2I RGATCY 6 cut(s) 205, 244, 757, 804, 1103, 1304
BstXI CCANNNNNNTGG 2 cut(s) 82, 936
BstYI RGATCY 6 cut(s) 205, 244, 757, 804, 1103, 1304
BsuI GTATCC 1 cut(s) 333
BsuRI GGCC 2 cut(s) 48, 236
BtgI CCRYGG 1 cut(s) 237
BtgZI GCGATG 1 cut(s) 690
BtsCI GGATG 3 cut(s) 129, 186, 1103
BveI ACCTGC 1 cut(s) 772
Cac8I GCNNGC 2 cut(s) 430, 630
CaiI CAGNNNCTG 1 cut(s) 1171
CfoI GCGC 2 cut(s) 568, 580
Csp6I GTAC 2 cut(s) 468, 1395
CspCI CAANNNNNGTGG 2 cut(s) 586, 621
CviAII CATG 4 cut(s) 101, 482, 1133, 1271
CviQI GTAC 2 cut(s) 468, 1395
DdeI CTNAG 5 cut(s) 14, 944, 999, 1265, 1301
DinI GGCGCC 1 cut(s) 567
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 1278
EarI CTCTTC 1 cut(s) 1278
EciI GGCGGA 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 988
EcoT14I CCWWGG 1 cut(s) 81
EgeI GGCGCC 1 cut(s) 567
EheI GGCGCC 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 4 cut(s) 104, 485, 1136, 1274
FalI AAGNNNNNCTT 2 cut(s) 493, 525
FaqI GGGAC 1 cut(s) 167
FatI CATG 4 cut(s) 100, 481, 1132, 1270
FauNDI CATATG 1 cut(s) 283
FbaI TGATCA 2 cut(s) 1162, 1339
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 9 cut(s) 296, 357, 426, 1222, 1298, 1323, 1326, 1349, 1404
FokI GGATG 3 cut(s) 116, 173, 1110
Fsp4HI GCNGC 9 cut(s) 296, 357, 426, 1222, 1298, 1323, 1326, 1349, 1404
GlaI GCGC 2 cut(s) 567, 579
GluI GCNGC 9 cut(s) 296, 357, 426, 1222, 1298, 1323, 1326, 1349, 1404
GsuI CTGGAG 1 cut(s) 932
HaeII RGCGCY 1 cut(s) 569
HaeIII GGCC 2 cut(s) 48, 236
HapII CCGG 5 cut(s) 221, 332, 497, 518, 755
HhaI GCGC 2 cut(s) 568, 580
Hin1I GRCGYC 1 cut(s) 566
Hin1II CATG 4 cut(s) 104, 485, 1136, 1274
Hin6I GCGC 2 cut(s) 566, 578
HinP1I GCGC 2 cut(s) 566, 578
HincII GTYRAC 2 cut(s) 373, 1381
HindII GTYRAC 2 cut(s) 373, 1381
HinfI GANTC 4 cut(s) 594, 617, 924, 1054
HpaII CCGG 5 cut(s) 221, 332, 497, 518, 755
HphI GGTGA 2 cut(s) 504, 1349
Hpy166II GTNNAC 2 cut(s) 373, 1381
Hpy188I TCNGA 6 cut(s) 15, 157, 349, 947, 1012, 1173
Hpy188III TCNNGA 8 cut(s) 133, 209, 709, 755, 921, 1051, 1095, 1187
Hpy8I GTNNAC 2 cut(s) 373, 1381
HpyAV CCTTC 7 cut(s) 52, 218, 262, 268, 546, 680, 1283
HpyCH4III ACNGT 2 cut(s) 241, 1399
HpyCH4IV ACGT 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 5 cut(s) 629, 653, 823, 1129, 1319
HpyF3I CTNAG 5 cut(s) 14, 944, 999, 1265, 1301
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 566
Hsp92II CATG 4 cut(s) 104, 485, 1136, 1274
HspAI GCGC 2 cut(s) 566, 578
KasI GGCGCC 1 cut(s) 565
Kpn2I TCCGGA 1 cut(s) 754
Ksp22I TGATCA 2 cut(s) 1162, 1339
LmnI GCTCC 1 cut(s) 227
Lsp1109I GCAGC 8 cut(s) 307, 368, 412, 1233, 1309, 1309, 1335, 1337
LweI GCATC 3 cut(s) 15, 961, 967
MaeII ACGT 1 cut(s) 96
MbiI CCGCTC 1 cut(s) 230
MboII GAAGA 3 cut(s) 743, 1202, 1295
MfeI CAATTG 1 cut(s) 399
MflI RGATCY 6 cut(s) 205, 244, 757, 804, 1103, 1304
MhlI GDGCHC 3 cut(s) 943, 1044, 1065
MluCI AATT 5 cut(s) 147, 399, 714, 786, 1124
Mly113I GGCGCC 1 cut(s) 566
MlyI GAGTC 2 cut(s) 603, 918
MmeI TCCRAC 1 cut(s) 117
MroI TCCGGA 1 cut(s) 754
MseI TTAA 1 cut(s) 306
MspA1I CMGCKG 4 cut(s) 202, 1224, 1300, 1328
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 5 cut(s) 221, 332, 497, 518, 755
MspR9I CCNGG 2 cut(s) 518, 990
MunI CAATTG 1 cut(s) 399
Mva1269I GAATGC 1 cut(s) 1180
MvaI CCWGG 1 cut(s) 990
MvnI CGCG 1 cut(s) 580
MwoI GCNNNNNNNGC 5 cut(s) 629, 653, 823, 1129, 1319
NarI GGCGCC 1 cut(s) 566
NciI CCSGG 1 cut(s) 518
NdeI CATATG 1 cut(s) 283
NlaIII CATG 4 cut(s) 104, 485, 1136, 1274
NlaIV GGNNCC 5 cut(s) 207, 567, 1041, 1064, 1105
NspI RCATGY 2 cut(s) 1136, 1274
NspV TTCGAA 2 cut(s) 255, 667
PctI GAATGC 1 cut(s) 1180
PfeI GAWTC 2 cut(s) 617, 1054
PkrI GCNGC 9 cut(s) 297, 358, 427, 1223, 1299, 1324, 1327, 1350, 1405
PleI GAGTC 2 cut(s) 602, 918
PluTI GGCGCC 1 cut(s) 569
PpsI GAGTC 2 cut(s) 602, 918
PshAI GACNNNNGTC 1 cut(s) 1197
Psp1406I AACGTT 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 988
PspGI CCWGG 1 cut(s) 988
PspN4I GGNNCC 5 cut(s) 207, 567, 1041, 1064, 1105
PstI CTGCAG 2 cut(s) 297, 1327
PstNI CAGNNNCTG 1 cut(s) 1171
PsuI RGATCY 6 cut(s) 205, 244, 757, 804, 1103, 1304
PvuII CAGCTG 2 cut(s) 1300, 1328
RsaI GTAC 2 cut(s) 469, 1396
RsaNI GTAC 2 cut(s) 468, 1395
SalI GTCGAC 1 cut(s) 371
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 9 cut(s) 296, 357, 426, 1222, 1298, 1323, 1326, 1349, 1404
SchI GAGTC 2 cut(s) 603, 918
ScrFI CCNGG 2 cut(s) 518, 990
SduI GDGCHC 3 cut(s) 943, 1044, 1065
SfaNI GCATC 3 cut(s) 15, 961, 967
SfcI CTRYAG 2 cut(s) 293, 1323
SfoI GGCGCC 1 cut(s) 567
SfuI TTCGAA 2 cut(s) 255, 667
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 5 cut(s) 147, 399, 714, 786, 1124
SsiI CCGC 4 cut(s) 39, 200, 230, 1224
SspDI GGCGCC 1 cut(s) 565
SspI AATATT 1 cut(s) 695
StyD4I CCNGG 2 cut(s) 516, 988
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 241, 1399
TaiI ACGT 1 cut(s) 99
TaqI TCGA 4 cut(s) 255, 372, 667, 1050
TasI AATT 5 cut(s) 147, 399, 714, 786, 1124
TfiI GAWTC 2 cut(s) 617, 1054
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseI GCWGC 9 cut(s) 295, 356, 425, 1221, 1297, 1322, 1325, 1348, 1403
TspDTI ATGAA 4 cut(s) 89, 100, 304, 528
TspGWI ACGGA 1 cut(s) 1096
Vha464I CTTAAG 1 cut(s) 305
XapI RAATTY 2 cut(s) 147, 786
XceI RCATGY 2 cut(s) 1136, 1274
XmiI GTMKAC 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.