Rmu_sc0013980.1_g000013

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013980.1
OG0000733
Physical Location & Seq
Reverse (-)
65604 .. 68119
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013980.1_g000013.1.cds

Sequence Viewer

Length: 1773 bp
atggcaaaagagcttcatgttgtcattcttccatggtctgcctttggccatatcatccctttgattcaactctccatagccttagcaaaagccaagattcatgtctccttcatatctacccccaaaaacatccaaaggctccccaaaatcccacctgagttgcaatctctcataacaatagtgtcttttcctttgccaactttggatgctgatcggctgttgcctgaaggggccgaggctacggtggacatacctttcgagaaaatggacgacttaaagtttgcatttgatcttctacgacaaccctttaagcagttcattgctgatcaagtgccggattggatcatcaccgattttgccgcccactgggcggttgacgttgccaaagagtatggtgttcctgttgcctacttctctcctttctctgctgctaagaatgtcttctgtggttcaccggaatatctctctcatgttccatcatcaccggaagtattcacctccccaccggagtgggttccttttccgtctttggtagcactcaatgagtttgaggcagttcgttggcatgctggtgtttataatgtgaatcgttctgggataagtgatgctgcaaggcttgccaagattgtatcaggaagtcaagtactagctgttcgtagttgcaatgaaattgaaggagagtacttgggtttgtacgcgaaactagccggaaaacctgtgattcccacaggtttgctgcctccaaagaaatcaaaaagggagtcggggaatgctgtgatctttgagtggcttgataagcagaaacccaggtcagttgtgtttgtagggtttgggagtgagtgtaagctgagcaaagaacaagtgtatgagatagctcatggtctggagctttcagagttgccatttctctgggcactcagaaaacccagttgggctagtactgatgctgatgctatacctctaggttttgtggacagaacatcaaagaagggccttgtttgcttgggatgggtgccccaaatagaaattctggggcacccatcagttgggggttctctgtttcactctggatggggttctgtgattgagactctgcaatttgggcattgccttgttgtgttacccttcattattgatcagcctctgaatgcaaggcttttagtggagaagggcctggctgccgaagtgaaacgcaacgaagatgggtcgtttactgcagacgacatagccaaaacactgaggctagcaatggtggaagaggaaggagagcacctgagaatcaatgcaaggaaagctgcagctgtttttggagatgagaagctgcaccaagaccactatcttggtgcatttgttgattatctcaagaataatgcaccactctttgatctatgttatgctaattatcgaggtgatctgtggaagaaagtgatgtatccggtgaacgttccgaagacaaagaagacctactgcaagagcaaggagtgcaaaaagcacaccttgcacaaagtcacacaatacaagaaaggaaaggacagccttgctgctcaggggaagcgtcgttatgatcgtaagcaatcgggttatggaggtcagaccaagccagtgtttcacaagaacgtaaaacacataaatttatcggcaaaaaccaccaagaagattgtgctgaggctccaatgccagggttgcaagcatgtgtcgcagcacccaatcaagaggtgcaagcactttgagattggaggagacaagaagggcaagggaacctctcttttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

590

Amino Acids

65.74

Weight (kDa)

9.21

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 579
AccB1I GGYRCC 2 cut(s) 1012, 1035
AccB7I CCANNNNNTGG 1 cut(s) 1046
AccII CGCG 1 cut(s) 698
AciI CCGC 2 cut(s) 360, 371
AclI AACGTT 1 cut(s) 1443
AclWI GGATC 1 cut(s) 350
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 2 cut(s) 1026, 1630
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 4 cut(s) 645, 683, 695, 940
AfiI CCNNNNNNNGG 4 cut(s) 366, 370, 1046, 1678
AgsI TTSAA 2 cut(s) 68, 674
AjnI CCWGG 3 cut(s) 806, 1173, 1677
AjuI GAANNNNNNNTTGG 4 cut(s) 913, 945, 1011, 1043
AleI CACNNNNGTG 1 cut(s) 508
AluBI AGCT 8 cut(s) 13, 650, 847, 875, 889, 1295, 1301, 1321
AluI AGCT 8 cut(s) 13, 650, 847, 875, 889, 1295, 1301, 1321
Alw21I GWGCWC 1 cut(s) 1272
Alw26I GTCTC 3 cut(s) 109, 1082, 1734
AlwI GGATC 1 cut(s) 350
AlwNI CAGNNNCTG 1 cut(s) 1144
AoxI GGCC 4 cut(s) 46, 231, 991, 1171
ApeKI GCWGC 9 cut(s) 428, 608, 736, 1178, 1295, 1298, 1321, 1541, 1699
ApoI RAATTY 2 cut(s) 1026, 1630
ArsI GACNNNNNNTTYG 6 cut(s) 239, 263, 271, 295, 746, 778
Asp700I GAANNNNTTC 1 cut(s) 440
AspS9I GGNCC 3 cut(s) 231, 991, 1171
AsuHPI GGTGA 6 cut(s) 340, 444, 474, 487, 1421, 1450
AsuNHI GCTAGC 1 cut(s) 1243
BaeGI GKGCMC 3 cut(s) 916, 1017, 1038
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 2 cut(s) 1012, 1035
BbsI GAAGAC 3 cut(s) 433, 1457, 1466
Bbv12I GWGCWC 1 cut(s) 1272
BbvCI CCTCAGC 1 cut(s) 1664
BbvI GCAGC 9 cut(s) 415, 595, 723, 1165, 1282, 1308, 1310, 1528, 1711
BccI CCATC 5 cut(s) 484, 1002, 1048, 1065, 1196
BciT130I CCWGG 3 cut(s) 808, 1175, 1679
BciVI GTATCC 1 cut(s) 1443
BclI TGATCA 2 cut(s) 325, 1135
BcoDI GTCTC 3 cut(s) 109, 1082, 1734
BfaI CTAG 6 cut(s) 647, 704, 936, 962, 1244, 1771
BfmI CTRYAG 2 cut(s) 1215, 1296
BfuI GTATCC 1 cut(s) 1443
BglI GCCNNNNNGGC 1 cut(s) 368
BlpI GCTNAGC 1 cut(s) 848
BmcAI AGTACT 3 cut(s) 645, 683, 940
Bme1390I CCNGG 3 cut(s) 808, 1175, 1679
BmgT120I GGNCC 3 cut(s) 231, 991, 1171
BmiI GGNNCC 7 cut(s) 140, 232, 516, 1014, 1037, 1670, 1759
BmrFI CCNGG 3 cut(s) 808, 1175, 1679
BmrI ACTGGG 2 cut(s) 376, 921
BmsI GCATC 4 cut(s) 196, 595, 934, 940
BmtI GCTAGC 1 cut(s) 1247
BmuI ACTGGG 2 cut(s) 376, 921
BpiI GAAGAC 3 cut(s) 433, 1457, 1466
BpmI CTGGAG 1 cut(s) 905
Bpu10I CCTNAGC 3 cut(s) 82, 1545, 1664
Bpu1102I GCTNAGC 1 cut(s) 848
BpuEI CTTGAG 1 cut(s) 1346
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 4 cut(s) 32, 234, 806, 1678
BsaWI WCCGGW 4 cut(s) 454, 484, 505, 1435
BsaXI ACNNNNNCTCC 2 cut(s) 826, 856
Bsc4I CCNNNNNNNGG 4 cut(s) 366, 370, 1046, 1678
Bse1I ACTGG 3 cut(s) 371, 927, 1601
Bse3DI GCAATG 4 cut(s) 318, 670, 1105, 1254
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 3 cut(s) 808, 1175, 1679
BseDI CCNNGG 4 cut(s) 32, 234, 806, 1678
BseGI GGATG 5 cut(s) 54, 129, 211, 1013, 1076
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 4 cut(s) 366, 370, 1046, 1678
BseMI GCAATG 4 cut(s) 318, 670, 1105, 1254
BseMII CTCAG 7 cut(s) 147, 839, 931, 1229, 1265, 1559, 1655
BseNI ACTGG 3 cut(s) 371, 927, 1601
BseRI GAGGAG 1 cut(s) 1752
BseSI GKGCMC 3 cut(s) 916, 1017, 1038
BseXI GCAGC 9 cut(s) 415, 595, 723, 1165, 1282, 1308, 1310, 1528, 1711
BsgI GTGCAG 1 cut(s) 1307
Bsh1236I CGCG 1 cut(s) 698
BshFI GGCC 4 cut(s) 48, 233, 993, 1173
BshNI GGYRCC 2 cut(s) 1012, 1035
BsiHKAI GWGCWC 1 cut(s) 1272
BsiSI CCGG 6 cut(s) 335, 455, 485, 506, 708, 1436
BslI CCNNNNNNNGG 4 cut(s) 366, 370, 1046, 1678
BsmAI GTCTC 3 cut(s) 109, 1082, 1734
BsmI GAATGC 2 cut(s) 775, 1153
BsnI GGCC 4 cut(s) 48, 233, 993, 1173
Bsp1286I GDGCHC 4 cut(s) 916, 1017, 1038, 1272
Bsp143I GATC 9 cut(s) 211, 289, 325, 342, 777, 1135, 1384, 1411, 1564
Bsp1720I GCTNAGC 1 cut(s) 848
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 2 cut(s) 360, 371
BspANI GGCC 4 cut(s) 48, 233, 993, 1173
BspCNI CTCAG 7 cut(s) 148, 840, 930, 1230, 1266, 1558, 1656
BspFNI CGCG 1 cut(s) 698
BspLI GGNNCC 7 cut(s) 140, 232, 516, 1014, 1037, 1670, 1759
BspMAI CTGCAG 2 cut(s) 1219, 1300
BspOI GCTAGC 1 cut(s) 1247
BspPI GGATC 1 cut(s) 350
BspT107I GGYRCC 2 cut(s) 1012, 1035
BsrDI GCAATG 4 cut(s) 318, 670, 1105, 1254
BsrI ACTGG 3 cut(s) 371, 927, 1601
BssECI CCNNGG 4 cut(s) 32, 234, 806, 1678
BssMI GATC 9 cut(s) 211, 289, 325, 342, 777, 1135, 1384, 1411, 1564
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 3 cut(s) 808, 1175, 1679
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 1251
BstAPI GCANNNNNTGC 3 cut(s) 617, 1482, 1498
BstC8I GCNNGC 5 cut(s) 567, 618, 1245, 1688, 1721
BstDEI CTNAG 9 cut(s) 82, 156, 432, 848, 917, 1238, 1274, 1545, 1664
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 5 cut(s) 54, 129, 211, 1013, 1076
BstFNI CGCG 1 cut(s) 698
BstKTI GATC 9 cut(s) 214, 292, 328, 345, 780, 1138, 1387, 1414, 1567
BstMAI GTCTC 3 cut(s) 109, 1082, 1734
BstMBI GATC 9 cut(s) 211, 289, 325, 342, 777, 1135, 1384, 1411, 1564
BstNI CCWGG 3 cut(s) 808, 1175, 1679
BstNSI RCATGY 2 cut(s) 569, 1694
BstSCI CCNGG 3 cut(s) 806, 1173, 1677
BstSFI CTRYAG 2 cut(s) 1215, 1296
BstSLI GKGCMC 3 cut(s) 916, 1017, 1038
BstUI CGCG 1 cut(s) 698
BstV1I GCAGC 9 cut(s) 415, 595, 723, 1165, 1282, 1308, 1310, 1528, 1711
BstV2I GAAGAC 3 cut(s) 433, 1457, 1466
BstXI CCANNNNNNTGG 3 cut(s) 510, 909, 1340
BsuI GTATCC 1 cut(s) 1443
BsuRI GGCC 4 cut(s) 48, 233, 993, 1173
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 5 cut(s) 54, 129, 211, 1013, 1076
BtsIMutI CAGTG 3 cut(s) 364, 1235, 1608
Cac8I GCNNGC 5 cut(s) 567, 618, 1245, 1688, 1721
CaiI CAGNNNCTG 1 cut(s) 1144
Cfr13I GGNCC 3 cut(s) 231, 991, 1171
CseI GACGC 1 cut(s) 1544
Csp6I GTAC 4 cut(s) 644, 682, 694, 939
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 7 cut(s) 17, 33, 101, 470, 566, 878, 1691
CviQI GTAC 4 cut(s) 644, 682, 694, 939
DdeI CTNAG 9 cut(s) 82, 156, 432, 848, 917, 1238, 1274, 1545, 1664
DpnI GATC 9 cut(s) 213, 291, 327, 344, 779, 1137, 1386, 1413, 1566
DpnII GATC 9 cut(s) 211, 289, 325, 342, 777, 1135, 1384, 1411, 1564
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 1251
EarI CTCTTC 1 cut(s) 1251
Eco130I CCWWGG 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 246
EcoO109I RGGNCCY 2 cut(s) 991, 1171
EcoRII CCWGG 3 cut(s) 806, 1173, 1677
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 7 cut(s) 20, 36, 104, 473, 569, 881, 1694
FalI AAGNNNNNCTT 4 cut(s) 425, 457, 1481, 1513
FatI CATG 7 cut(s) 16, 32, 100, 469, 565, 877, 1690
FbaI TGATCA 2 cut(s) 325, 1135
FokI GGATG 5 cut(s) 41, 116, 218, 1020, 1083
FspBI CTAG 6 cut(s) 647, 704, 936, 962, 1244, 1771
GsuI CTGGAG 1 cut(s) 905
HaeIII GGCC 4 cut(s) 48, 233, 993, 1173
HapII CCGG 6 cut(s) 335, 455, 485, 506, 708, 1436
HgaI GACGC 1 cut(s) 1544
Hin1II CATG 7 cut(s) 20, 36, 104, 473, 569, 881, 1694
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 7 cut(s) 64, 97, 586, 721, 761, 1090, 1278
HpaII CCGG 6 cut(s) 335, 455, 485, 506, 708, 1436
HphI GGTGA 6 cut(s) 340, 444, 474, 487, 1421, 1450
Hpy166II GTNNAC 6 cut(s) 247, 376, 452, 973, 1212, 1441
Hpy188I TCNGA 5 cut(s) 895, 920, 1146, 1449, 1593
Hpy188III TCNNGA 6 cut(s) 259, 633, 884, 1068, 1363, 1711
Hpy8I GTNNAC 6 cut(s) 247, 376, 452, 973, 1212, 1441
Hpy99I CGWCG 1 cut(s) 1560
HpyAV CCTTC 8 cut(s) 118, 221, 668, 982, 1135, 1162, 1256, 1741
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 3 cut(s) 378, 1443, 1617
HpyF3I CTNAG 9 cut(s) 82, 156, 432, 848, 917, 1238, 1274, 1545, 1664
HpySE526I ACGT 3 cut(s) 378, 1443, 1617
Hsp92II CATG 7 cut(s) 20, 36, 104, 473, 569, 881, 1694
Ksp22I TGATCA 2 cut(s) 325, 1135
Kzo9I GATC 9 cut(s) 211, 289, 325, 342, 777, 1135, 1384, 1411, 1564
LmnI GCTCC 3 cut(s) 144, 886, 1674
Lsp1109I GCAGC 9 cut(s) 415, 595, 723, 1165, 1282, 1308, 1310, 1528, 1711
LweI GCATC 4 cut(s) 196, 595, 934, 940
MaeI CTAG 6 cut(s) 647, 704, 936, 962, 1244, 1771
MaeII ACGT 3 cut(s) 378, 1443, 1617
MaeIII GTNAC 2 cut(s) 1119, 1507
MalI GATC 9 cut(s) 213, 291, 327, 344, 779, 1137, 1386, 1413, 1566
MboI GATC 9 cut(s) 211, 289, 325, 342, 777, 1135, 1384, 1411, 1564
MboII GAAGA 9 cut(s) 20, 284, 433, 1211, 1268, 1432, 1462, 1471, 1666
MhlI GDGCHC 4 cut(s) 916, 1017, 1038, 1272
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 5 cut(s) 669, 1026, 1097, 1399, 1630
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 2 cut(s) 770, 1084
Mox20I TGGCCA 1 cut(s) 48
MroXI GAANNNNTTC 1 cut(s) 440
MscI TGGCCA 1 cut(s) 48
MseI TTAA 2 cut(s) 275, 309
MslI CAYNNNNRTG 2 cut(s) 508, 570
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 1301
MspI CCGG 6 cut(s) 335, 455, 485, 506, 708, 1436
MspR9I CCNGG 3 cut(s) 808, 1175, 1679
Mva1269I GAATGC 2 cut(s) 775, 1153
MvaI CCWGG 3 cut(s) 808, 1175, 1679
MvnI CGCG 1 cut(s) 698
NcoI CCATGG 1 cut(s) 32
NdeII GATC 9 cut(s) 211, 289, 325, 342, 777, 1135, 1384, 1411, 1564
NheI GCTAGC 1 cut(s) 1243
NlaIII CATG 7 cut(s) 20, 36, 104, 473, 569, 881, 1694
NlaIV GGNNCC 7 cut(s) 140, 232, 516, 1014, 1037, 1670, 1759
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 1507
NspI RCATGY 2 cut(s) 569, 1694
OliI CACNNNNGTG 1 cut(s) 508
PaeI GCATGC 1 cut(s) 569
PcsI WCGNNNNNNNCGW 1 cut(s) 1564
PctI GAATGC 2 cut(s) 775, 1153
PdmI GAANNNNTTC 1 cut(s) 440
PfeI GAWTC 5 cut(s) 64, 97, 586, 721, 1278
PflMI CCANNNNNTGG 1 cut(s) 1046
PleI GAGTC 2 cut(s) 769, 1084
PpsI GAGTC 2 cut(s) 769, 1084
PsiI TTATAA 1 cut(s) 579
Psp1406I AACGTT 1 cut(s) 1443
Psp6I CCWGG 3 cut(s) 806, 1173, 1677
PspGI CCWGG 3 cut(s) 806, 1173, 1677
PspN4I GGNNCC 7 cut(s) 140, 232, 516, 1014, 1037, 1670, 1759
PspPI GGNCC 3 cut(s) 231, 991, 1171
PsrI GAACNNNNNNTAC 2 cut(s) 636, 668
PstI CTGCAG 2 cut(s) 1219, 1300
PstNI CAGNNNCTG 1 cut(s) 1144
PvuII CAGCTG 1 cut(s) 1301
RsaI GTAC 4 cut(s) 645, 683, 695, 940
RsaNI GTAC 4 cut(s) 644, 682, 694, 939
RseI CAYNNNNRTG 2 cut(s) 508, 570
SaqAI TTAA 2 cut(s) 275, 309
Sau3AI GATC 9 cut(s) 211, 289, 325, 342, 777, 1135, 1384, 1411, 1564
Sau96I GGNCC 3 cut(s) 231, 991, 1171
ScaI AGTACT 3 cut(s) 645, 683, 940
SchI GAGTC 2 cut(s) 770, 1084
ScrFI CCNGG 3 cut(s) 808, 1175, 1679
SduI GDGCHC 4 cut(s) 916, 1017, 1038, 1272
SfaNI GCATC 4 cut(s) 196, 595, 934, 940
SfcI CTRYAG 2 cut(s) 1215, 1296
SmiMI CAYNNNNRTG 2 cut(s) 508, 570
SmlI CTYRAG 1 cut(s) 1361
SmoI CTYRAG 1 cut(s) 1361
SphI GCATGC 1 cut(s) 569
Sse9I AATT 5 cut(s) 669, 1026, 1097, 1399, 1630
SsiI CCGC 2 cut(s) 360, 371
SspMI CTAG 6 cut(s) 647, 704, 936, 962, 1244, 1771
StyD4I CCNGG 3 cut(s) 806, 1173, 1677
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 3 cut(s) 381, 1446, 1620
TaqI TCGA 2 cut(s) 258, 1405
TasI AATT 5 cut(s) 669, 1026, 1097, 1399, 1630
TatI WGTACW 3 cut(s) 643, 681, 938
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 5 cut(s) 64, 97, 586, 721, 1278
Tru1I TTAA 2 cut(s) 275, 309
Tru9I TTAA 2 cut(s) 275, 309
TscAI CASTG 3 cut(s) 371, 1242, 1608
TseFI GTSAC 1 cut(s) 1507
TseI GCWGC 9 cut(s) 428, 608, 736, 1178, 1295, 1298, 1321, 1541, 1699
Tsp45I GTSAC 1 cut(s) 1507
TspDTI ATGAA 6 cut(s) 5, 89, 100, 307, 681, 1117
TspGWI ACGGA 1 cut(s) 513
TspRI CASTG 3 cut(s) 371, 1242, 1608
Van91I CCANNNNNTGG 1 cut(s) 1046
XapI RAATTY 2 cut(s) 1026, 1630
XceI RCATGY 2 cut(s) 569, 1694
XmnI GAANNNNTTC 1 cut(s) 440
XspI CTAG 6 cut(s) 647, 704, 936, 962, 1244, 1771
ZrmI AGTACT 3 cut(s) 645, 683, 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.