Rh1BG235700

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000733
Physical Location & Seq
Forward (+)
35865836 .. 35866192
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG235700.1

Sequence Viewer

Length: 357 bp
ATGGGATGGGTGCCACAAATCGAAATTCTGGGACACCCATCAATCGGGGGTTCTCTGTTTCACTCTGGATGGGGTTCTGTGATTGAAACTCTGCAATTTGGGCATTGCCTTGTTGTGTTACCCTTAATTGCTGATCAGCCTCTGAATGCAAGGCTTCTGGTGGAGAAGGGTCTGGCTGCCGAAGTGAAACGCAACGAAGATGGGTCGTTTACTGCAGACGACATAGCCAAAACACTGAGGCTTGCAATGGTGGAAGAGGAAGGAGAGCACCTGAGAACCAATGCAAGGAAAGCTGCAGCTGTTTTTGGAGATGAGAAGCTGCACCAAGACCACTACGTACCTTGGTGCATTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

118

Amino Acids

12.98

Weight (kDa)

5.4

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 2 - 83 5.5e-14 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 10
AcsI RAATTY 1 cut(s) 24
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 2 cut(s) 44, 285
AgsI TTSAA 1 cut(s) 86
AluBI AGCT 3 cut(s) 293, 299, 319
AluI AGCT 3 cut(s) 293, 299, 319
Alw21I GWGCWC 1 cut(s) 270
AlwNI CAGNNNCTG 1 cut(s) 142
ApeKI GCWGC 4 cut(s) 176, 293, 296, 319
ApoI RAATTY 1 cut(s) 24
BanI GGYRCC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 4 cut(s) 163, 280, 306, 308
BccI CCATC 3 cut(s) 46, 63, 194
BclI TGATCA 1 cut(s) 133
BfmI CTRYAG 2 cut(s) 213, 294
BisI GCNGC 4 cut(s) 177, 294, 297, 320
BlsI GCNGC 4 cut(s) 178, 295, 298, 321
BmiI GGNNCC 1 cut(s) 12
BsaAI YACGTR 1 cut(s) 337
BsaJI CCNNGG 1 cut(s) 341
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 285
Bse3DI GCAATG 2 cut(s) 103, 252
BseDI CCNNGG 1 cut(s) 341
BseGI GGATG 2 cut(s) 11, 74
BseLI CCNNNNNNNGG 2 cut(s) 44, 285
BseMI GCAATG 2 cut(s) 103, 252
BseMII CTCAG 2 cut(s) 227, 263
BseXI GCAGC 4 cut(s) 163, 280, 306, 308
BsgI GTGCAG 1 cut(s) 305
BshNI GGYRCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 270
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 44, 285
BsmFI GGGAC 1 cut(s) 45
BsmI GAATGC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 133
BspCNI CTCAG 2 cut(s) 228, 264
BspLI GGNNCC 1 cut(s) 12
BspMAI CTGCAG 2 cut(s) 217, 298
BspT107I GGYRCC 1 cut(s) 10
BsrDI GCAATG 2 cut(s) 103, 252
BssECI CCNNGG 1 cut(s) 341
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 341
Bst6I CTCTTC 1 cut(s) 249
BstBAI YACGTR 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 236, 272
BstF5I GGATG 2 cut(s) 11, 74
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 100, 290
BstSFI CTRYAG 2 cut(s) 213, 294
BstSNI TACGTA 1 cut(s) 337
BstV1I GCAGC 4 cut(s) 163, 280, 306, 308
BtsCI GGATG 2 cut(s) 11, 74
BtsIMutI CAGTG 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 243
CaiI CAGNNNCTG 1 cut(s) 142
Csp6I GTAC 1 cut(s) 338
CviJI RGCY 8 cut(s) 139, 154, 176, 227, 241, 293, 299, 319
CviKI_1 RGCY 8 cut(s) 139, 154, 176, 227, 241, 293, 299, 319
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 236, 272
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco105I TACGTA 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 341
EcoT14I CCWWGG 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 341
FaiI YATR 1 cut(s) 224
FaqI GGGAC 1 cut(s) 45
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 4 cut(s) 177, 294, 297, 320
FokI GGATG 2 cut(s) 18, 81
Fsp4HI GCNGC 4 cut(s) 177, 294, 297, 320
GluI GCNGC 4 cut(s) 177, 294, 297, 320
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 66
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 2 cut(s) 160, 254
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 8 cut(s) 94, 149, 215, 245, 284, 296, 322, 348
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 290
HpyF3I CTNAG 2 cut(s) 236, 272
HpySE526I ACGT 1 cut(s) 336
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 5 cut(s) 14, 51, 143, 158, 284
Lsp1109I GCAGC 4 cut(s) 163, 280, 306, 308
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 117
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 2 cut(s) 209, 266
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 3 cut(s) 24, 95, 126
MnlI CCTC 3 cut(s) 150, 231, 250
MseI TTAA 1 cut(s) 125
MspA1I CMGCKG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 151
MwoI GCNNNNNNNGC 2 cut(s) 100, 290
NdeII GATC 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 12
PctI GAATGC 1 cut(s) 151
PkrI GCNGC 4 cut(s) 178, 295, 298, 321
Ppu21I YACGTR 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 12
PstI CTGCAG 2 cut(s) 217, 298
PstNI CAGNNNCTG 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 4 cut(s) 177, 294, 297, 320
Sau3AI GATC 1 cut(s) 133
SduI GDGCHC 1 cut(s) 270
SetI ASST 6 cut(s) 273, 295, 301, 321, 339, 343
SfcI CTRYAG 2 cut(s) 213, 294
SnaBI TACGTA 1 cut(s) 337
Sse9I AATT 3 cut(s) 24, 95, 126
StyI CCWWGG 1 cut(s) 341
TaiI ACGT 1 cut(s) 339
TaqI TCGA 1 cut(s) 21
TasI AATT 3 cut(s) 24, 95, 126
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 1 cut(s) 240
TseI GCWGC 4 cut(s) 176, 293, 296, 319
TspRI CASTG 1 cut(s) 240
XapI RAATTY 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.