Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002071.1

Orthogroup ID

OG0000733

Physical Location & Seq

Genomic Coordinates Forward (+)

112726 .. 114905

Gene Structure 2180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002071.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgaacacacacacacagagcagttcagaagaggacgtctgcacagatgtaaaagtgtggacgaccctcctcaggcctcgatcaggtggcgatggcggcgctcaggttactggtgcagaactaggcctcaatgtcgagcctctgcttgccgttggagtcgtcgatgaagagtttgaaggggtaaatcgacaatcatggaataagtcaggggataatttggctactttgcctatatatccagcccattggcttgataagcaaaaacccaggcccattgtgtttgtggggtttgggagtgagtgtaagctgagcaaagaacaagttcatgagataggtcatgggctggagctttcagaattgccatttatttggggactcagaaaacccaattcagctaacagtgatgaagtagatgattttctgcctttaggttttgttgacaggacatcagagaaagggcttgtttgctctggatgggtgccccaaatggaaattttggctcacccatcaattgggggctctttgtttcattctggatggggttctgtgattgagaccctgcttttggtagagaagggtctggctgccgaagcgacacgcaacaaagacgggtcgcttagtagagaggaaatagcaaaaacattaaggctagcaatggtggaagaggaaggaaagcacttgagtagcaatgcgaggaaagctgctgcagttttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

238

Amino Acids

25.86

Weight (kDa)

5.13

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05830 FvH4_7g15020 FvH4_7g15600 FvH4_7g15610 FvH4_7g15620 FvH4_7g15650
malus_domestica	MD00G1112100.v1.1 MD01G1068500.v1.1 MD01G1068700.v1.1 MD01G1068800.v1.1 MD03G1019100.v1.1
prunus_persica	Prupe.2G174700_v2.0.a1 Prupe.2G175000_v2.0.a1 Prupe.2G175000_v2.0.a1
pyrus_communis	pycom01g09780 pycom01g09790 pycom01g09820 pycom01g09840 pycom07g13020
rosa_chinensis	RchiOBHm_Chr1g0357061 RchiOBHm_Chr1g0357071 RchiOBHm_Chr1g0358281 RchiOBHm_Chr1g0358291 RchiOBHm_Chr1g0358321 RchiOBHm_Chr1g0358331
rosa_laevigata	RLG00000027973 RLG00000027974 RLG00000027975 RLG00000027976 RLG00000028053 RLG00000028054 RLG00000028055 RLG00000028057 RLG00000028153
rosa_multiflora	Rmu_sc0000166.1_g000044 Rmu_sc0000166.1_g000047 Rmu_sc0002071.1_g000024 Rmu_sc0002071.1_g000025 Rmu_sc0002144.1_g000001 Rmu_sc0013980.1_g000005 Rmu_sc0013980.1_g000013 Rmu_sc0013980.1_g000020 Rmu_sc0013980.1_g000023 Rmu_sc0016079.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298220 Rroxscaffold_4G00298250 Rroxscaffold_4G00299080
rosa_rugosa	Rorug01G0246700 Rorug01G0254000 Rorug01G0254100 Rorug01G0260600 Rorug01G0261000
rosa_samantha	Rh1AG267700 Rh1AG267800 Rh1AG268200 Rh1AG274700 Rh1BG235600 Rh1BG235700 Rh1BG235900 Rh1BG241500 Rh1CG243100 Rh1CG251700 Rh1CG251900 Rh1CG257800 Rh1DG263000 Rh1DG263100 Rh1DG263200 Rh1DG270300
rosa_wichuraiana	Rw1G023630 Rw1G023640 Rw1G023670 Rw1G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	478
AccB7I	CCANNNNNTGG	1 cut(s)	512
AciI	CCGC	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	36
AfiI	CCNNNNNNNGG	4 cut(s)	72, 83, 512, 565
AgsI	TTSAA	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	4 cut(s)	307, 349, 395, 701
AluI	AGCT	4 cut(s)	307, 349, 395, 701
Alw26I	GTCTC	1 cut(s)	548
AoxI	GGCC	3 cut(s)	74, 124, 269
ApeKI	GCWGC	3 cut(s)	584, 701, 704
ApoI	RAATTY	1 cut(s)	492
ArsI	GACNNNNNNTTYG	2 cut(s)	547, 579
Asp700I	GAANNNNTTC	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	494
AsuNHI	GCTAGC	1 cut(s)	649
AxyI	CCTNAGG	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	521
BbvI	GCAGC	3 cut(s)	571, 688, 691
BccI	CCATC	4 cut(s)	86, 468, 514, 531
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	2 cut(s)	122, 650
BfmI	CTRYAG	1 cut(s)	705
BfoI	RGCGCY	1 cut(s)	102
BisI	GCNGC	4 cut(s)	97, 585, 702, 705
BlpI	GCTNAGC	1 cut(s)	308
BlsI	GCNGC	4 cut(s)	98, 586, 703, 706
Bme1390I	CCNGG	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	268
BmtI	GCTAGC	1 cut(s)	653
BpmI	CTGGAG	1 cut(s)	365
Bpu10I	CCTNAGC	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	700
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	266
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 83, 512, 565
Bse1I	ACTGG	1 cut(s)	115
Bse21I	CCTNAGG	1 cut(s)	71
Bse3DI	GCAATG	2 cut(s)	660, 694
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	2 cut(s)	479, 542
BseLI	CCNNNNNNNGG	4 cut(s)	72, 83, 512, 565
BseMI	GCAATG	2 cut(s)	660, 694
BseMII	CTCAG	4 cut(s)	85, 116, 299, 391
BseNI	ACTGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	3 cut(s)	571, 688, 691
BsgI	GTGCAG	2 cut(s)	25, 135
BshFI	GGCC	3 cut(s)	76, 126, 271
BshNI	GGYRCC	1 cut(s)	478
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	4 cut(s)	72, 83, 512, 565
BsmAI	GTCTC	1 cut(s)	548
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	3 cut(s)	76, 126, 271
Bso31I	GGTCTC	1 cut(s)	548
Bsp1286I	GDGCHC	2 cut(s)	483, 521
Bsp143I	GATC	1 cut(s)	80
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	3 cut(s)	76, 126, 271
BspCNI	CTCAG	4 cut(s)	84, 115, 300, 390
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	480
BspMAI	CTGCAG	1 cut(s)	709
BspOI	GCTAGC	1 cut(s)	653
BspT107I	GGYRCC	1 cut(s)	478
BspTNI	GGTCTC	1 cut(s)	548
BsrDI	GCAATG	2 cut(s)	660, 694
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	1 cut(s)	80
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	401
Bst6I	CTCTTC	3 cut(s)	24, 162, 657
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	147, 651
BstDEI	CTNAG	5 cut(s)	71, 102, 308, 377, 617
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	479, 542
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	1 cut(s)	83
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 256, 590, 698
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	705
BstSLI	GKGCMC	1 cut(s)	483
BstV1I	GCAGC	3 cut(s)	571, 688, 691
BstXI	CCANNNNNNTGG	2 cut(s)	246, 369
Bsu36I	CCTNAGG	1 cut(s)	71
BsuRI	GGCC	3 cut(s)	76, 126, 271
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	479, 542
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	2 cut(s)	147, 651
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	270
CviAII	CATG	3 cut(s)	195, 326, 338
DdeI	CTNAG	5 cut(s)	71, 102, 308, 377, 617
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
Eam1104I	CTCTTC	3 cut(s)	24, 162, 657
EarI	CTCTTC	3 cut(s)	24, 162, 657
Eco147I	AGGCCT	2 cut(s)	76, 126
Eco24I	GRGCYC	1 cut(s)	521
Eco31I	GGTCTC	1 cut(s)	548
Eco81I	CCTNAGG	1 cut(s)	71
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	521
FaeI	CATG	3 cut(s)	198, 329, 341
FaiI	YATR	5 cut(s)	196, 233, 235, 327, 339
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	3 cut(s)	194, 325, 337
Fnu4HI	GCNGC	4 cut(s)	97, 585, 702, 705
FokI	GGATG	2 cut(s)	486, 549
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	4 cut(s)	97, 585, 702, 705
FspBI	CTAG	2 cut(s)	122, 650
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	4 cut(s)	97, 585, 702, 705
GsuI	CTGGAG	1 cut(s)	365
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	3 cut(s)	76, 126, 271
HhaI	GCGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	198, 329, 341
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	2 cut(s)	156, 375
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	2 cut(s)	60, 439
Hpy188I	TCNGA	4 cut(s)	28, 355, 380, 451
Hpy188III	TCNNGA	3 cut(s)	326, 471, 534
Hpy8I	GTNNAC	2 cut(s)	60, 439
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	3 cut(s)	170, 568, 662
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	42, 116, 707
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 256, 590, 698
HpyF3I	CTNAG	5 cut(s)	71, 102, 308, 377, 617
HpySE526I	ACGT	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	198, 329, 341
HspAI	GCGC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	3 cut(s)	571, 688, 691
MaeI	CTAG	2 cut(s)	122, 650
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	82
MboI	GATC	1 cut(s)	80
MboII	GAAGA	3 cut(s)	41, 179, 674
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	2 cut(s)	483, 521
MluCI	AATT	5 cut(s)	214, 356, 388, 492, 510
MlyI	GAGTC	2 cut(s)	165, 369
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	9 cut(s)	25, 77, 80, 87, 137, 150, 619, 658, 687
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	1 cut(s)	644
MspR9I	CCNGG	1 cut(s)	268
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	4 cut(s)	96, 256, 590, 698
NdeII	GATC	1 cut(s)	80
NheI	GCTAGC	1 cut(s)	649
NlaIII	CATG	3 cut(s)	198, 329, 341
NlaIV	GGNNCC	1 cut(s)	480
PagI	TCATGA	1 cut(s)	325
PceI	AGGCCT	2 cut(s)	76, 126
PdmI	GAANNNNTTC	1 cut(s)	321
PflMI	CCANNNNNTGG	1 cut(s)	512
PkrI	GCNGC	4 cut(s)	98, 586, 703, 706
PleI	GAGTC	2 cut(s)	164, 369
PpsI	GAGTC	2 cut(s)	164, 369
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	480
PspPI	GGNCC	1 cut(s)	270
PstI	CTGCAG	1 cut(s)	709
SaqAI	TTAA	1 cut(s)	644
SatI	GCNGC	4 cut(s)	97, 585, 702, 705
Sau3AI	GATC	1 cut(s)	80
Sau96I	GGNCC	1 cut(s)	270
SchI	GAGTC	2 cut(s)	165, 369
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	2 cut(s)	483, 521
SetI	ASST	9 cut(s)	39, 88, 108, 309, 337, 351, 397, 433, 703
SfcI	CTRYAG	1 cut(s)	705
SmlI	CTYRAG	1 cut(s)	679
SmoI	CTYRAG	1 cut(s)	679
Sse9I	AATT	5 cut(s)	214, 356, 388, 492, 510
SseBI	AGGCCT	2 cut(s)	76, 126
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	2 cut(s)	122, 650
StuI	AGGCCT	2 cut(s)	76, 126
StyD4I	CCNGG	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	4 cut(s)	79, 135, 162, 187
TasI	AATT	5 cut(s)	214, 356, 388, 492, 510
TauI	GCSGC	1 cut(s)	99
Tru1I	TTAA	1 cut(s)	644
Tru9I	TTAA	1 cut(s)	644
TscAI	CASTG	1 cut(s)	406
TseI	GCWGC	3 cut(s)	584, 701, 704
TspDTI	ATGAA	5 cut(s)	17, 180, 314, 420, 518
TspRI	CASTG	1 cut(s)	406
Van91I	CCANNNNNTGG	1 cut(s)	512
XagI	CCTNNNNNAGG	1 cut(s)	81
XapI	RAATTY	1 cut(s)	492
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	2 cut(s)	122, 650
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.