Rroxscaffold_4G00298250

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000733
Physical Location & Seq
Reverse (-)
18124589 .. 18125227
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298250.1

Sequence Viewer

Length: 639 bp
ATGATGGCATACGATCTTCTTCAAACACCCATCAAGCATTTCATTGCAGATAAAATGCGGGATTGGATAATTGCCGATTTCGCTGCTCATTGGGTGGTCGAAATTGCCAAAGAGTATGGTGTTCCACTTGCCTACTTCTCATGTTTCAGTGCTGCAACCAGTGTTTTCTTTGGCCCACCTGAATATCTCACTGGTGCAAACAGAAACTATGCTCTACCATCACCACAAAGCTTGACATCTCCACGAGAATGGGTCCCTTTTCCTTCTTTGGTGTCATTGAAGGAGCATGAAGCCATTTCTGTGCCTCTAAGGTCTTTCGCACCAAATAGTACAGGGTTAAGTTTTATGTCAAGGATTGCCAAGATCATATCAGCAAGTCAAGTTTTGGCGATTCGTACTTGCAGTGAGATTGAAGGAGACTACTTGGAAGTGTACAAGAAAATTACTGGAAAGCCAGTGATTCCCATTGGTGTGCTTCCTCCAGATCAACCTGGGAAAAGGGAAAAAGGGGAAATAAACTCCGATGGGGCTATGTTTGATTGGCTTGATAAGCAAAAACCCAGGTCAATTGTGTTTGTGGGGTTTGGGAGTGAGTGTAGGCTGAGTGTCACGGGCCGACTTTACACGCAGCGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

212

Amino Acids

23.65

Weight (kDa)

8.38

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 58, 631
AfaI GTAC 3 cut(s) 331, 397, 434
AgsI TTSAA 3 cut(s) 23, 280, 413
AjnI CCWGG 2 cut(s) 490, 560
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 411
AoxI GGCC 2 cut(s) 172, 613
ApeKI GCWGC 3 cut(s) 83, 152, 628
AspS9I GGNCC 3 cut(s) 173, 253, 613
AsuHPI GGTGA 1 cut(s) 213
AvaII GGWCC 1 cut(s) 253
BauI CACGAG 1 cut(s) 243
BbvI GCAGC 2 cut(s) 70, 139
BccI CCATC 3 cut(s) 38, 226, 518
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciT130I CCWGG 2 cut(s) 492, 562
BcoDI GTCTC 1 cut(s) 411
BisI GCNGC 3 cut(s) 84, 153, 629
BlsI GCNGC 3 cut(s) 85, 154, 630
Bme1390I CCNGG 2 cut(s) 492, 562
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 3 cut(s) 173, 253, 613
BmiI GGNNCC 2 cut(s) 254, 255
BmrFI CCNGG 2 cut(s) 492, 562
BpmI CTGGAG 1 cut(s) 465
BsaJI CCNNGG 2 cut(s) 491, 560
BsaXI ACNNNNNCTCC 2 cut(s) 580, 610
Bse1I ACTGG 4 cut(s) 159, 196, 451, 455
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 2 cut(s) 492, 562
BseDI CCNNGG 2 cut(s) 491, 560
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 593
BseNI ACTGG 4 cut(s) 159, 196, 451, 455
BseXI GCAGC 2 cut(s) 70, 139
BshFI GGCC 2 cut(s) 174, 615
BslFI GGGAC 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 2 cut(s) 174, 615
Bsp1407I TGTACA 1 cut(s) 432
Bsp143I GATC 3 cut(s) 13, 363, 484
BspACI CCGC 2 cut(s) 58, 631
BspANI GGCC 2 cut(s) 174, 615
BspCNI CTCAG 1 cut(s) 594
BspLI GGNNCC 2 cut(s) 254, 255
BsrDI GCAATG 1 cut(s) 42
BsrGI TGTACA 1 cut(s) 432
BsrI ACTGG 4 cut(s) 159, 196, 451, 455
BssECI CCNNGG 2 cut(s) 491, 560
BssMI GATC 3 cut(s) 13, 363, 484
BssSI CACGAG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 243
Bst2UI CCWGG 2 cut(s) 492, 562
BstAUI TGTACA 1 cut(s) 432
BstDEI CTNAG 2 cut(s) 308, 602
BstKTI GATC 3 cut(s) 16, 366, 487
BstMAI GTCTC 1 cut(s) 411
BstMBI GATC 3 cut(s) 13, 363, 484
BstMWI GCNNNNNNNGC 2 cut(s) 80, 550
BstNI CCWGG 2 cut(s) 492, 562
BstSCI CCNGG 2 cut(s) 490, 560
BstV1I GCAGC 2 cut(s) 70, 139
BstXI CCANNNNNNTGG 1 cut(s) 249
BsuRI GGCC 2 cut(s) 174, 615
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 5 cut(s) 154, 166, 189, 409, 462
Cfr13I GGNCC 3 cut(s) 173, 253, 613
Csp6I GTAC 3 cut(s) 330, 396, 433
CspCI CAANNNNNGTGG 2 cut(s) 213, 248
CviAII CATG 2 cut(s) 141, 287
CviJI RGCY 8 cut(s) 174, 231, 293, 454, 530, 544, 601, 615
CviKI_1 RGCY 8 cut(s) 174, 231, 293, 454, 530, 544, 601, 615
CviQI GTAC 3 cut(s) 330, 396, 433
DdeI CTNAG 2 cut(s) 308, 602
DpnI GATC 3 cut(s) 15, 365, 486
DpnII GATC 3 cut(s) 13, 363, 484
Eco47I GGWCC 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 253
EcoRII CCWGG 2 cut(s) 490, 560
FaeI CATG 2 cut(s) 144, 290
FaiI YATR 8 cut(s) 10, 117, 142, 210, 288, 347, 368, 533
FaqI GGGAC 1 cut(s) 239
FatI CATG 2 cut(s) 140, 286
FauI CCCGC 1 cut(s) 51
Fnu4HI GCNGC 3 cut(s) 84, 153, 629
Fsp4HI GCNGC 3 cut(s) 84, 153, 629
GluI GCNGC 3 cut(s) 84, 153, 629
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 2 cut(s) 174, 615
Hin1II CATG 2 cut(s) 144, 290
HindIII AAGCTT 1 cut(s) 229
HinfI GANTC 2 cut(s) 391, 460
HphI GGTGA 1 cut(s) 213
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 1 cut(s) 523
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 3 cut(s) 273, 274, 407
HpyCH4V TGCA 4 cut(s) 47, 155, 197, 402
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 550
HpyF3I CTNAG 2 cut(s) 308, 602
Hsp92II CATG 2 cut(s) 144, 290
KflI GGGWCCC 1 cut(s) 253
Kzo9I GATC 3 cut(s) 13, 363, 484
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 2 cut(s) 70, 139
MaeIII GTNAC 1 cut(s) 607
MalI GATC 3 cut(s) 15, 365, 486
MboI GATC 3 cut(s) 13, 363, 484
MboII GAAGA 2 cut(s) 8, 11
MfeI CAATTG 1 cut(s) 567
MluCI AATT 5 cut(s) 69, 102, 441, 567, 634
MnlI CCTC 2 cut(s) 315, 489
MseI TTAA 1 cut(s) 338
MslI CAYNNNNRTG 3 cut(s) 247, 299, 470
MspA1I CMGCKG 1 cut(s) 631
MspR9I CCNGG 2 cut(s) 492, 562
MunI CAATTG 1 cut(s) 567
MvaI CCWGG 2 cut(s) 492, 562
MwoI GCNNNNNNNGC 2 cut(s) 80, 550
NdeII GATC 3 cut(s) 13, 363, 484
NlaIII CATG 2 cut(s) 144, 290
NlaIV GGNNCC 2 cut(s) 254, 255
NmuCI GTSAC 1 cut(s) 607
PfeI GAWTC 2 cut(s) 391, 460
PkrI GCNGC 3 cut(s) 85, 154, 630
PpuMI RGGWCCY 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 2 cut(s) 490, 560
PspGI CCWGG 2 cut(s) 490, 560
PspN4I GGNNCC 2 cut(s) 254, 255
PspPI GGNCC 3 cut(s) 173, 253, 613
PspPPI RGGWCCY 1 cut(s) 253
RsaI GTAC 3 cut(s) 331, 397, 434
RsaNI GTAC 3 cut(s) 330, 396, 433
RseI CAYNNNNRTG 3 cut(s) 247, 299, 470
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 3 cut(s) 84, 153, 629
Sau3AI GATC 3 cut(s) 13, 363, 484
Sau96I GGNCC 3 cut(s) 173, 253, 613
ScrFI CCNGG 2 cut(s) 492, 562
SetI ASST 5 cut(s) 181, 233, 314, 493, 566
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 3 cut(s) 247, 299, 470
Sse9I AATT 5 cut(s) 69, 102, 441, 567, 634
SsiI CCGC 2 cut(s) 58, 631
StyD4I CCNGG 2 cut(s) 490, 560
TaqI TCGA 1 cut(s) 99
TasI AATT 5 cut(s) 69, 102, 441, 567, 634
TatI WGTACW 2 cut(s) 329, 432
TfiI GAWTC 2 cut(s) 391, 460
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 5 cut(s) 154, 166, 196, 409, 462
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 3 cut(s) 83, 152, 628
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 2 cut(s) 31, 303
TspRI CASTG 5 cut(s) 154, 166, 196, 409, 462
VpaK11BI GGWCC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.