Rorug01G0260600

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000733
Physical Location & Seq
Reverse (-)
37017259 .. 37020524
3266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0260600.1

Sequence Viewer

Length: 1359 bp
ATGTGTTCTTCCAGTACTTCATGCTCATACAAGAATGTGCATCAGAAAAAGCCTTTTCCAATAGAGCGCAGGCCAACAATGCTCAAGGATTTCCTCAATGAAAATTCCAATTCATGTTCTTCAAGTGGGTTCAAATCATTTCCAAGAAAACCACAACTTGATTGCAAAGCAAGAAACCCAAATCCCAAACCCAATACCACCATTACTAGCAAGTTACACAGAAGCAGATCAAAAGCAGCATCTACCACAATCTCAGCATTCCAGTCCTTCATGAATGTGGTAAAAAACATCCAATTTACCGCAGTAAAAACTCCCTCCCTTTTACCCCGGAGCCTCTCACGGCGGCTGTCCAAAAAGAGCTCATGGTCAAGGAAGCAGAGTATTCAAACTCAAGTCCAAATCAGTGTGAAGGTCAAAGATATCCTACGGTGGACATCATTTCGCGACGAGAGGTTACCTCAATCTCTGCCGTGGGATTTCGCTTCTTCACCTCACCATTGTACCACAGCCACCACCGTAACAGAGTCCACAACCACTACTACTACTTGTAGTAATAGCAGCAATGGGTCAAGTTGGTGTGACAGTGATTTTACCACGGAGTCTTTACCGTCTCCGTTGGGTGGTAAAAATGAGATGGGTAAAAAGTATTCACCATGTGTCGGCAGGAATTCCATGGAGGCTACGGCAGGGACAGCAAGATGCGGTGAATTGGACCCCAAGGTTGAGGTGCTATTTTGTGATGAAGATGAACAACACAGCCCAGTTTCTGTGCTCGATTTTCACTTTGGGGAAGACGATGAAGAGGCATTTTCGACTACTTTTGACCAAAGCCTTGCCAATGTGGAGAGAACGAAAGAAATGCTTATGCAAAGGATCAAGCACTTTCAGAGTCTTGCCAACCTAGACGCTGATTTCGACTCATGGTTGTCACCGGAAGAAGGTATCAACTTCGAAGAAGAAGAAGAAGAAGAGCATGGAATTGAAGAGAGGGCATTGGAACTGTTGAATTTTGTCAGAGCAACTAGCTTAAAACCAGAGAGCTGTGAGGACGAAATGGAAGATAAACTATTGTTGGATTTCTTCAGGGAAGAATTGGGTGCACAAAGAAATTATCAAACAGATGATGGGTTTAATTGGGAGATCGTTCGCAAAGCAAAAGCTTGGATTAGTGAGGAAAATACTGGACCCTTTGAGTGGGGACTTGAGCACAAGAAAGAAGCCTTTGTTAGAGATATGCATAAAGGAGGGAAGTGGATTAACAAGTTTGAGGATGAGAAAGAGGAGTTGGCTTTACAAATCGAGACTGCCGTGCTTGAGTTCTTGGTGGATGAGCTTTCGGTTGATCTCTTATTGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

452

Amino Acids

51.49

Weight (kDa)

5.27

Isoelectric Point (pI)

56.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 444
AciI CCGC 3 cut(s) 300, 343, 702
AclWI GGATC 1 cut(s) 881
AcsI RAATTY 3 cut(s) 103, 667, 1006
AcuI CTGAAG 1 cut(s) 1066
AdeI CACNNNGTG 1 cut(s) 656
AfaI GTAC 2 cut(s) 16, 502
AfiI CCNNNNNNNGG 4 cut(s) 620, 659, 938, 1194
AgsI TTSAA 5 cut(s) 123, 133, 386, 983, 1006
AjuI GAANNNNNNNTTGG 2 cut(s) 1268, 1300
AluBI AGCT 5 cut(s) 360, 1026, 1041, 1160, 1333
AluI AGCT 5 cut(s) 360, 1026, 1041, 1160, 1333
Alw21I GWGCWC 4 cut(s) 362, 774, 1102, 1209
Alw26I GTCTC 2 cut(s) 615, 1295
Alw44I GTGCAC 1 cut(s) 1098
AlwI GGATC 1 cut(s) 881
AlwNI CAGNNNCTG 1 cut(s) 767
AoxI GGCC 1 cut(s) 71
ApaLI GTGCAC 1 cut(s) 1098
ApeKI GCWGC 2 cut(s) 236, 558
ApoI RAATTY 3 cut(s) 103, 667, 1006
ArsI GACNNNNNNTTYG 2 cut(s) 896, 928
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 712, 1184
AsuC2I CCSGG 1 cut(s) 328
AsuHPI GGTGA 5 cut(s) 480, 485, 642, 716, 921
AsuII TTCGAA 1 cut(s) 951
AvaII GGWCC 2 cut(s) 712, 1184
BaeGI GKGCMC 1 cut(s) 1102
BaeI ACNNNNGTAYC 2 cut(s) 484, 517
BanII GRGCYC 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 798
Bbv12I GWGCWC 4 cut(s) 362, 774, 1102, 1209
BbvI GCAGC 2 cut(s) 248, 570
BccI CCATC 2 cut(s) 628, 1118
BceAI ACGGC 4 cut(s) 356, 454, 699, 1292
BcgI CGANNNNNNTGC 2 cut(s) 841, 875
BcnI CCSGG 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 615, 1295
BfaI CTAG 3 cut(s) 207, 902, 1023
BisI GCNGC 3 cut(s) 237, 344, 559
BlsI GCNGC 3 cut(s) 238, 345, 560
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 2 cut(s) 712, 1184
BmgT120I GGNCC 2 cut(s) 712, 1184
BmiI GGNNCC 3 cut(s) 332, 714, 1186
BmrFI CCNGG 1 cut(s) 328
BmrI ACTGGG 1 cut(s) 755
BmsI GCATC 3 cut(s) 49, 248, 689
BmuI ACTGGG 1 cut(s) 755
BpiI GAAGAC 1 cut(s) 798
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu14I TTCGAA 1 cut(s) 951
BpuEI CTTGAG 4 cut(s) 68, 375, 1223, 1334
BpuMI CCSGG 1 cut(s) 328
BsaJI CCNNGG 5 cut(s) 326, 470, 594, 672, 717
BsaWI WCCGGW 1 cut(s) 931
Bsc4I CCNNNNNNNGG 4 cut(s) 620, 659, 938, 1194
Bse1I ACTGG 4 cut(s) 12, 262, 761, 1186
Bse3DI GCAATG 1 cut(s) 568
BseDI CCNNGG 5 cut(s) 326, 470, 594, 672, 717
BseGI GGATG 3 cut(s) 288, 1276, 1333
BseLI CCNNNNNNNGG 4 cut(s) 620, 659, 938, 1194
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 4 cut(s) 12, 262, 761, 1186
BseRI GAGGAG 1 cut(s) 1295
BseSI GKGCMC 1 cut(s) 1102
BseXI GCAGC 2 cut(s) 248, 570
Bsh1236I CGCG 1 cut(s) 444
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 4 cut(s) 362, 774, 1102, 1209
BsiSI CCGG 2 cut(s) 328, 932
BslFI GGGAC 2 cut(s) 703, 1212
BslI CCNNNNNNNGG 4 cut(s) 620, 659, 938, 1194
BsmAI GTCTC 2 cut(s) 615, 1295
BsmBI CGTCTC 1 cut(s) 615
BsmFI GGGAC 2 cut(s) 703, 1212
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 951
Bsp1286I GDGCHC 4 cut(s) 362, 774, 1102, 1209
Bsp143I GATC 4 cut(s) 227, 873, 1140, 1342
Bsp19I CCATGG 1 cut(s) 672
Bsp68I TCGCGA 1 cut(s) 444
BspACI CCGC 3 cut(s) 300, 343, 702
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 266
BspFNI CGCG 1 cut(s) 444
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 3 cut(s) 332, 714, 1186
BspPI GGATC 1 cut(s) 881
BspQI GCTCTTC 1 cut(s) 963
BspT104I TTCGAA 1 cut(s) 951
BsrDI GCAATG 1 cut(s) 568
BsrI ACTGG 4 cut(s) 12, 262, 761, 1186
BssECI CCNNGG 5 cut(s) 326, 470, 594, 672, 717
BssMI GATC 4 cut(s) 227, 873, 1140, 1342
BssT1I CCWWGG 2 cut(s) 672, 717
Bst4CI ACNGT 5 cut(s) 429, 517, 584, 609, 1002
Bst6I CTCTTC 3 cut(s) 795, 963, 978
BstBI TTCGAA 1 cut(s) 951
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 253
BstDSI CCRYGG 3 cut(s) 470, 594, 672
BstEII GGTNACC 1 cut(s) 453
BstF5I GGATG 3 cut(s) 288, 1276, 1333
BstFNI CGCG 1 cut(s) 444
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 4 cut(s) 230, 876, 1143, 1345
BstMAI GTCTC 2 cut(s) 615, 1295
BstMBI GATC 4 cut(s) 227, 873, 1140, 1342
BstMWI GCNNNNNNNGC 2 cut(s) 79, 692
BstPI GGTNACC 1 cut(s) 453
BstSCI CCNGG 1 cut(s) 326
BstSLI GKGCMC 1 cut(s) 1102
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 248, 570
BstV2I GAAGAC 1 cut(s) 798
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 3 cut(s) 470, 594, 672
BtsCI GGATG 3 cut(s) 288, 1276, 1333
BtsIMutI CAGTG 2 cut(s) 409, 589
BtuMI TCGCGA 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 71
CaiI CAGNNNCTG 1 cut(s) 767
CciI TCATGA 1 cut(s) 270
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 712, 1184
CseI GACGC 1 cut(s) 914
Csp6I GTAC 2 cut(s) 15, 501
CviAII CATG 8 cut(s) 21, 114, 271, 363, 654, 673, 921, 974
CviQI GTAC 2 cut(s) 15, 501
DdeI CTNAG 1 cut(s) 253
DpnI GATC 4 cut(s) 229, 875, 1142, 1344
DpnII GATC 4 cut(s) 227, 873, 1140, 1342
DraIII CACNNNGTG 1 cut(s) 656
Eam1104I CTCTTC 3 cut(s) 795, 963, 978
EarI CTCTTC 3 cut(s) 795, 963, 978
Ecl136II GAGCTC 1 cut(s) 360
Eco130I CCWWGG 2 cut(s) 672, 717
Eco24I GRGCYC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 712, 1184
Eco53kI GAGCTC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 1066
Eco91I GGTNACC 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 360
EcoO65I GGTNACC 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 667
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 2 cut(s) 672, 717
EcoT22I ATGCAT 1 cut(s) 1239
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 2 cut(s) 672, 717
Esp3I CGTCTC 1 cut(s) 615
FaeI CATG 8 cut(s) 24, 117, 274, 366, 657, 676, 924, 977
FalI AAGNNNNNCTT 2 cut(s) 846, 878
FaqI GGGAC 2 cut(s) 703, 1212
FatI CATG 8 cut(s) 20, 113, 270, 362, 653, 672, 920, 973
Fnu4HI GCNGC 3 cut(s) 237, 344, 559
FokI GGATG 3 cut(s) 275, 1283, 1340
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 3 cut(s) 237, 344, 559
FspBI CTAG 3 cut(s) 207, 902, 1023
GlaI GCGC 1 cut(s) 68
GluI GCNGC 3 cut(s) 237, 344, 559
HaeIII GGCC 1 cut(s) 73
HapII CCGG 2 cut(s) 328, 932
HgaI GACGC 1 cut(s) 914
HhaI GCGC 1 cut(s) 69
Hin1II CATG 8 cut(s) 24, 117, 274, 366, 657, 676, 924, 977
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 1158
HinfI GANTC 4 cut(s) 524, 599, 889, 917
HpaII CCGG 2 cut(s) 328, 932
HphI GGTGA 5 cut(s) 480, 485, 642, 716, 921
Hpy166II GTNNAC 3 cut(s) 432, 528, 1100
Hpy188I TCNGA 3 cut(s) 45, 888, 1016
Hpy188III TCNNGA 3 cut(s) 271, 443, 1300
Hpy8I GTNNAC 3 cut(s) 432, 528, 1100
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 3 cut(s) 277, 403, 932
HpyCH4III ACNGT 5 cut(s) 429, 517, 584, 609, 1002
HpyCH4V TGCA 5 cut(s) 40, 165, 868, 1100, 1237
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 692
HpyF3I CTNAG 1 cut(s) 253
Hsp92II CATG 8 cut(s) 24, 117, 274, 366, 657, 676, 924, 977
HspAI GCGC 1 cut(s) 67
Kzo9I GATC 4 cut(s) 227, 873, 1140, 1342
LguI GCTCTTC 1 cut(s) 963
LmnI GCTCC 1 cut(s) 330
Lsp1109I GCAGC 2 cut(s) 248, 570
LweI GCATC 3 cut(s) 49, 248, 689
MaeI CTAG 3 cut(s) 207, 902, 1023
MaeIII GTNAC 5 cut(s) 213, 453, 517, 578, 927
MalI GATC 4 cut(s) 229, 875, 1142, 1344
MboI GATC 4 cut(s) 227, 873, 1140, 1342
MhlI GDGCHC 4 cut(s) 362, 774, 1102, 1209
MlyI GAGTC 4 cut(s) 533, 608, 898, 911
MmeI TCCRAC 1 cut(s) 1053
Mph1103I ATGCAT 1 cut(s) 1239
MseI TTAA 3 cut(s) 1028, 1131, 1257
MslI CAYNNNNRTG 1 cut(s) 275
MspI CCGG 2 cut(s) 328, 932
MspR9I CCNGG 1 cut(s) 328
Mva1269I GAATGC 1 cut(s) 257
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 2 cut(s) 79, 692
NciI CCSGG 1 cut(s) 328
NcoI CCATGG 1 cut(s) 672
NdeII GATC 4 cut(s) 227, 873, 1140, 1342
NlaIII CATG 8 cut(s) 24, 117, 274, 366, 657, 676, 924, 977
NlaIV GGNNCC 3 cut(s) 332, 714, 1186
NmuCI GTSAC 2 cut(s) 578, 927
NruI TCGCGA 1 cut(s) 444
NsiI ATGCAT 1 cut(s) 1239
NspV TTCGAA 1 cut(s) 951
PagI TCATGA 1 cut(s) 270
PciSI GCTCTTC 1 cut(s) 963
PcsI WCGNNNNNNNCGW 2 cut(s) 912, 1305
PctI GAATGC 1 cut(s) 257
PkrI GCNGC 3 cut(s) 238, 345, 560
PleI GAGTC 4 cut(s) 532, 607, 897, 911
PpsI GAGTC 4 cut(s) 532, 607, 897, 911
Psp124BI GAGCTC 1 cut(s) 362
PspEI GGTNACC 1 cut(s) 453
PspN4I GGNNCC 3 cut(s) 332, 714, 1186
PspPI GGNCC 2 cut(s) 712, 1184
PstNI CAGNNNCTG 1 cut(s) 767
RruI TCGCGA 1 cut(s) 444
RsaI GTAC 2 cut(s) 16, 502
RsaNI GTAC 2 cut(s) 15, 501
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 963
SaqAI TTAA 3 cut(s) 1028, 1131, 1257
SatI GCNGC 3 cut(s) 237, 344, 559
Sau3AI GATC 4 cut(s) 227, 873, 1140, 1342
Sau96I GGNCC 2 cut(s) 712, 1184
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 4 cut(s) 533, 608, 898, 911
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 4 cut(s) 362, 774, 1102, 1209
SfaNI GCATC 3 cut(s) 49, 248, 689
SfuI TTCGAA 1 cut(s) 951
SinI GGWCC 2 cut(s) 712, 1184
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 4 cut(s) 83, 390, 1202, 1313
SmoI CTYRAG 4 cut(s) 83, 390, 1202, 1313
SsiI CCGC 3 cut(s) 300, 343, 702
SspMI CTAG 3 cut(s) 207, 902, 1023
SstI GAGCTC 1 cut(s) 362
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 2 cut(s) 672, 717
TaaI ACNGT 5 cut(s) 429, 517, 584, 609, 1002
TaqI TCGA 5 cut(s) 774, 812, 915, 951, 1299
TatI WGTACW 1 cut(s) 14
TauI GCSGC 1 cut(s) 346
Tru1I TTAA 3 cut(s) 1028, 1131, 1257
Tru9I TTAA 3 cut(s) 1028, 1131, 1257
TscAI CASTG 2 cut(s) 409, 589
TseFI GTSAC 2 cut(s) 578, 927
TseI GCWGC 2 cut(s) 236, 558
Tsp45I GTSAC 2 cut(s) 578, 927
TspDTI ATGAA 8 cut(s) 9, 102, 114, 259, 287, 756, 762, 813
TspGWI ACGGA 2 cut(s) 603, 611
TspRI CASTG 2 cut(s) 409, 589
VneI GTGCAC 1 cut(s) 1098
VpaK11BI GGWCC 2 cut(s) 712, 1184
XapI RAATTY 3 cut(s) 103, 667, 1006
XspI CTAG 3 cut(s) 207, 902, 1023
ZrmI AGTACT 1 cut(s) 16
Zsp2I ATGCAT 1 cut(s) 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.