pycom01g09820

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000733
Physical Location & Seq
Forward (+)
10628359 .. 10629885
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g09820.1

Sequence Viewer

Length: 1527 bp
ATGTCATTTAGTCCAATAAACCGACAATCTGGTTCAAAACTACATGTTAATTCTCTCATTGCAATTTCGATCCGACAGAAAGAATACAATACAATTATGGAAAAAGATGATCATCTTAGCGTTGTGATGCTGCCATGGTCTGCCTTTGGCCACATGATGCCTTTTTTCCAACTTTCAATAGCTTTAGCAAAAGCGAAAGTTCATGTCTCCTTCATATCCACACCAAAAAACATCCAAAGACTCCCCAAAATCTTACCAGATTTACAACCCTTTGTGCAATTAGTCCCCATTCCATTTCCACCGTTGGATCCCGACTTGTTGCCGGAAGGAGCTGAGGCCACAGTGGACCTCCCCTTTGAAAATACCGACAACTTGAAGATTGCATACGACCTCCTGCAAACACCCATCAAGCAGTTCATTGGGGATCGATTGCCTGATTCGATCATAACCGACTTTGCTGCTCATTGGGTCGTAGAGATTGGCAAAGAGTACGGCGTTCCACTTGTCTATTTTTCTGTATTCTCTGCTGCTACAATTGTCGTTTTAAGTTCAGCTGAAAATCCCTCTAGTGGTAATACAGATGATACTCTGCCATCGCCGGAAAGCCTTACTTCGCCGCCGGATCTGGTTACTTCTCAGTCAACGGTCGCATTCCGAGAGAACGAGGCGGTCGATTTTCACGCGGGCCTTTACGGAGTGAATGATTCCGGGATAAGTGATGCCGAAAGGCACGCCAAGATTCTATCAGCTTGTCAAGTTTTCGCCATTCGGAGTTGCTATGAGTTTGAAGAAGAGTACTTGGAGGCATACATGAACAACTCTGGGAAGCTTGTGATTCCCACTGGTTTGCTTCCTCCTGAGATACCTGCAAAAGGGGTAAAAAGGGAAATTTTCACTGTTGATGGGATCTTTGCATGGCTCGATAAGCAAAAAACCAGGTCAGTTGTGTTTGTAGGGTTTGGGAGTGAGTGTAAGTTGAGTAAAGAGCAAGTCTTTGAGATAGCTCATGGGCTGGAGCTATCAGAACTCCCCTTTCTTTGGGCACTCAGAAAACCCAATTGGGCAAATAGTGAAGCCGATGCTCTGCCTCTAGGGTTTGTTGACCGTGTATCAGAGAAGGGGCTTGTTTGCCTCGGATGGGTGCCCCAAATGGAAATCTTGGCACACCCATCGGTTGGGGGTTCTCTCTTTCACTCTGGATGGGGATCAATAATTGAGACTCTGCAATTTGGGCATGTTCTTGTTGTGCTACCATTCATTCTTGATCAGCCTCTGAATGCAAGGCTTTTGGAGGAGAAGGGTATGGCTGTCGAAGTGAAACGACGCGGAGATGGGTCGTTTAGTAAAGATGACATAGCCAAAACACTCCGGCACGCGATGGTGGAGGAGGAAGGAGAGCAGTTGAGATCCAATGCTAGGAGCGCTGCAACTGTTTTTGGAGATCACAAGCTGCACCAAGAGCACTACATTGGCCAGTTTGTCAACTTTCTTAAAAACGACACTACAAAAAGGTCCTCCTGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

509

Amino Acids

56.35

Weight (kDa)

5.32

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 312 - 460 2.2e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 874
AccB1I GGYRCC 1 cut(s) 1141
AccB7I CCANNNNNTGG 1 cut(s) 1175
AccII CGCG 3 cut(s) 683, 1326, 1376
AciI CCGC 4 cut(s) 617, 668, 683, 1326
AclWI GGATC 8 cut(s) 64, 302, 315, 432, 630, 914, 1213, 1401
AcoI YGGCCR 2 cut(s) 148, 1471
AcsI RAATTY 1 cut(s) 888
AfaI GTAC 2 cut(s) 491, 797
AfeI AGCGCT 1 cut(s) 1423
AfiI CCNNNNNNNGG 6 cut(s) 569, 872, 1038, 1138, 1175, 1416
AflIII ACRYGT 1 cut(s) 43
AgsI TTSAA 5 cut(s) 36, 177, 359, 376, 788
AjnI CCWGG 1 cut(s) 935
AjuI GAANNNNNNNTTGG 2 cut(s) 1042, 1074
AluBI AGCT 8 cut(s) 182, 332, 554, 749, 829, 1004, 1018, 1450
AluI AGCT 8 cut(s) 182, 332, 554, 749, 829, 1004, 1018, 1450
Alw21I GWGCWC 1 cut(s) 1464
Alw26I GTCTC 2 cut(s) 211, 1211
AlwI GGATC 8 cut(s) 64, 302, 315, 432, 630, 914, 1213, 1401
AlwNI CAGNNNCTG 1 cut(s) 1273
Aor51HI AGCGCT 1 cut(s) 1423
AoxI GGCC 4 cut(s) 148, 336, 685, 1471
ApeKI GCWGC 5 cut(s) 130, 458, 527, 1424, 1450
ApoI RAATTY 1 cut(s) 888
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AspLEI GCGC 1 cut(s) 1424
AspS9I GGNCC 3 cut(s) 346, 685, 1512
AsuC2I CCSGG 1 cut(s) 709
AvaII GGWCC 2 cut(s) 346, 1512
BaeGI GKGCMC 2 cut(s) 1045, 1146
BalI TGGCCA 2 cut(s) 150, 1473
BamHI GGATCC 1 cut(s) 307
BanI GGYRCC 1 cut(s) 1141
BarI GAAGNNNNNNTAC 2 cut(s) 368, 400
Bbv12I GWGCWC 1 cut(s) 1464
BbvCI CCTCAGC 1 cut(s) 333
BbvI GCAGC 5 cut(s) 117, 445, 514, 1411, 1437
BccI CCATC 8 cut(s) 413, 601, 896, 1131, 1177, 1194, 1325, 1372
BceAI ACGGC 1 cut(s) 508
BcgI CGANNNNNNTGC 4 cut(s) 440, 474, 1152, 1186
BciT130I CCWGG 1 cut(s) 937
BclI TGATCA 2 cut(s) 109, 1264
BcnI CCSGG 1 cut(s) 709
BcoDI GTCTC 2 cut(s) 211, 1211
BfaI CTAG 3 cut(s) 567, 1091, 1416
BfoI RGCGCY 1 cut(s) 1425
BfuAI ACCTGC 1 cut(s) 874
BisI GCNGC 6 cut(s) 131, 459, 528, 617, 1425, 1451
BlsI GCNGC 6 cut(s) 132, 460, 529, 618, 1426, 1452
BmcAI AGTACT 1 cut(s) 797
Bme1390I CCNGG 2 cut(s) 709, 937
Bme18I GGWCC 2 cut(s) 346, 1512
BmgT120I GGNCC 3 cut(s) 346, 685, 1512
BmiI GGNNCC 2 cut(s) 309, 1143
BmrFI CCNGG 2 cut(s) 709, 937
BmsI GCATC 4 cut(s) 117, 147, 709, 1069
BpmI CTGGAG 1 cut(s) 1034
Bpu10I CCTNAGC 1 cut(s) 333
BpuMI CCSGG 1 cut(s) 709
Bsa29I ATCGAT 1 cut(s) 427
BsaBI GATNNNNATC 2 cut(s) 111, 1204
BsaJI CCNNGG 2 cut(s) 134, 1132
BsaXI ACNNNNNCTCC 2 cut(s) 955, 985
Bsc4I CCNNNNNNNGG 6 cut(s) 569, 872, 1038, 1138, 1175, 1416
Bse1I ACTGG 2 cut(s) 847, 1474
Bse3DI GCAATG 1 cut(s) 57
Bse8I GATNNNNATC 2 cut(s) 111, 1204
BseBI CCWGG 1 cut(s) 937
BseCI ATCGAT 1 cut(s) 427
BseDI CCNNGG 2 cut(s) 134, 1132
BseGI GGATG 3 cut(s) 231, 1142, 1205
BseJI GATNNNNATC 2 cut(s) 111, 1204
BseLI CCNNNNNNNGG 6 cut(s) 569, 872, 1038, 1138, 1175, 1416
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 4 cut(s) 324, 650, 849, 1060
BseNI ACTGG 2 cut(s) 847, 1474
BseRI GAGGAG 2 cut(s) 1307, 1400
BseSI GKGCMC 2 cut(s) 1045, 1146
BseXI GCAGC 5 cut(s) 117, 445, 514, 1411, 1437
BsgI GTGCAG 1 cut(s) 1436
Bsh1236I CGCG 3 cut(s) 683, 1326, 1376
Bsh1285I CGRYCG 2 cut(s) 648, 672
BshFI GGCC 4 cut(s) 150, 338, 687, 1473
BshNI GGYRCC 1 cut(s) 1141
BshVI ATCGAT 1 cut(s) 427
BsiEI CGRYCG 2 cut(s) 648, 672
BsiHKAI GWGCWC 1 cut(s) 1464
BsiSI CCGG 5 cut(s) 323, 599, 620, 708, 1369
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 6 cut(s) 569, 872, 1038, 1138, 1175, 1416
BsmAI GTCTC 2 cut(s) 211, 1211
BsmFI GGGAC 1 cut(s) 269
BsmI GAATGC 2 cut(s) 650, 1282
BsnI GGCC 4 cut(s) 150, 338, 687, 1473
Bsp1286I GDGCHC 3 cut(s) 1045, 1146, 1464
Bsp19I CCATGG 1 cut(s) 134
BspACI CCGC 4 cut(s) 617, 668, 683, 1326
BspANI GGCC 4 cut(s) 150, 338, 687, 1473
BspCNI CTCAG 4 cut(s) 325, 649, 850, 1059
BspDI ATCGAT 1 cut(s) 427
BspFNI CGCG 3 cut(s) 683, 1326, 1376
BspLI GGNNCC 2 cut(s) 309, 1143
BspMI ACCTGC 1 cut(s) 874
BspPI GGATC 8 cut(s) 64, 302, 315, 432, 630, 914, 1213, 1401
BspT107I GGYRCC 1 cut(s) 1141
BsrDI GCAATG 1 cut(s) 57
BsrI ACTGG 2 cut(s) 847, 1474
BssECI CCNNGG 2 cut(s) 134, 1132
BssT1I CCWWGG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 937
Bst4CI ACNGT 6 cut(s) 303, 343, 646, 898, 1106, 1432
Bst6I CTCTTC 1 cut(s) 786
BstC8I GCNNGC 3 cut(s) 685, 732, 1374
BstDEI CTNAG 5 cut(s) 116, 333, 636, 858, 1046
BstDSI CCRYGG 1 cut(s) 134
BstENI CCTNNNNNAGG 1 cut(s) 870
BstF5I GGATG 3 cut(s) 231, 1142, 1205
BstFNI CGCG 3 cut(s) 683, 1326, 1376
BstH2I RGCGCY 1 cut(s) 1425
BstHHI GCGC 1 cut(s) 1424
BstMAI GTCTC 2 cut(s) 211, 1211
BstMCI CGRYCG 2 cut(s) 648, 672
BstMWI GCNNNNNNNGC 4 cut(s) 925, 1231, 1421, 1459
BstNI CCWGG 1 cut(s) 937
BstNSI RCATGY 2 cut(s) 47, 1238
BstSCI CCNGG 2 cut(s) 707, 935
BstSLI GKGCMC 2 cut(s) 1045, 1146
BstUI CGCG 3 cut(s) 683, 1326, 1376
BstV1I GCAGC 5 cut(s) 117, 445, 514, 1411, 1437
BstX2I RGATCY 4 cut(s) 307, 622, 906, 1406
BstYI RGATCY 4 cut(s) 307, 622, 906, 1406
Bsu15I ATCGAT 1 cut(s) 427
BsuRI GGCC 4 cut(s) 150, 338, 687, 1473
BsuTUI ATCGAT 1 cut(s) 427
BtgI CCRYGG 1 cut(s) 134
BtgZI GCGATG 2 cut(s) 579, 1391
BtsCI GGATG 3 cut(s) 231, 1142, 1205
BtsIMutI CAGTG 3 cut(s) 348, 840, 894
BveI ACCTGC 1 cut(s) 874
Cac8I GCNNGC 3 cut(s) 685, 732, 1374
CaiI CAGNNNCTG 1 cut(s) 1273
CfoI GCGC 1 cut(s) 1424
Cfr13I GGNCC 3 cut(s) 346, 685, 1512
ClaI ATCGAT 1 cut(s) 427
CseI GACGC 1 cut(s) 1332
CsiI ACCWGGT 1 cut(s) 935
Csp6I GTAC 2 cut(s) 490, 796
CviAII CATG 8 cut(s) 44, 135, 154, 203, 811, 915, 1007, 1235
CviQI GTAC 2 cut(s) 490, 796
DdeI CTNAG 5 cut(s) 116, 333, 636, 858, 1046
EaeI YGGCCR 2 cut(s) 148, 1471
Eam1104I CTCTTC 1 cut(s) 786
EarI CTCTTC 1 cut(s) 786
Eco130I CCWWGG 1 cut(s) 134
Eco47I GGWCC 2 cut(s) 346, 1512
Eco47III AGCGCT 1 cut(s) 1423
EcoNI CCTNNNNNAGG 1 cut(s) 870
EcoO109I RGGNCCY 1 cut(s) 1512
EcoRII CCWGG 1 cut(s) 935
EcoT14I CCWWGG 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 8 cut(s) 47, 138, 157, 206, 814, 918, 1010, 1238
FalI AAGNNNNNCTT 2 cut(s) 595, 627
FaqI GGGAC 1 cut(s) 269
FatI CATG 8 cut(s) 43, 134, 153, 202, 810, 914, 1006, 1234
FauI CCCGC 1 cut(s) 676
FbaI TGATCA 2 cut(s) 109, 1264
Fnu4HI GCNGC 6 cut(s) 131, 459, 528, 617, 1425, 1451
FokI GGATG 3 cut(s) 218, 1149, 1212
Fsp4HI GCNGC 6 cut(s) 131, 459, 528, 617, 1425, 1451
FspBI CTAG 3 cut(s) 567, 1091, 1416
GlaI GCGC 1 cut(s) 1423
GluI GCNGC 6 cut(s) 131, 459, 528, 617, 1425, 1451
GsuI CTGGAG 1 cut(s) 1034
HaeII RGCGCY 1 cut(s) 1425
HaeIII GGCC 4 cut(s) 150, 338, 687, 1473
HapII CCGG 5 cut(s) 323, 599, 620, 708, 1369
HgaI GACGC 1 cut(s) 1332
HhaI GCGC 1 cut(s) 1424
Hin1II CATG 8 cut(s) 47, 138, 157, 206, 814, 918, 1010, 1238
Hin6I GCGC 1 cut(s) 1422
HinP1I GCGC 1 cut(s) 1422
HincII GTYRAC 3 cut(s) 642, 1102, 1483
HindII GTYRAC 3 cut(s) 642, 1102, 1483
HindIII AAGCTT 1 cut(s) 827
HinfI GANTC 6 cut(s) 240, 437, 704, 739, 835, 1219
HpaII CCGG 5 cut(s) 323, 599, 620, 708, 1369
Hpy166II GTNNAC 4 cut(s) 346, 642, 1102, 1483
Hpy188I TCNGA 8 cut(s) 74, 656, 771, 1024, 1049, 1114, 1136, 1275
Hpy188III TCNNGA 4 cut(s) 311, 857, 1197, 1262
Hpy8I GTNNAC 4 cut(s) 346, 642, 1102, 1483
Hpy99I CGWCG 1 cut(s) 1326
HpyAV CCTTC 5 cut(s) 220, 320, 1111, 1291, 1385
HpyCH4III ACNGT 6 cut(s) 303, 343, 646, 898, 1106, 1432
HpyF10VI GCNNNNNNNGC 4 cut(s) 925, 1231, 1421, 1459
HpyF3I CTNAG 5 cut(s) 116, 333, 636, 858, 1046
Hsp92II CATG 8 cut(s) 47, 138, 157, 206, 814, 918, 1010, 1238
HspAI GCGC 1 cut(s) 1422
Ksp22I TGATCA 2 cut(s) 109, 1264
LmnI GCTCC 3 cut(s) 329, 1015, 1419
Lsp1109I GCAGC 5 cut(s) 117, 445, 514, 1411, 1437
LweI GCATC 4 cut(s) 117, 147, 709, 1069
MabI ACCWGGT 1 cut(s) 935
MaeI CTAG 3 cut(s) 567, 1091, 1416
MaeIII GTNAC 1 cut(s) 628
MboII GAAGA 3 cut(s) 388, 800, 803
MfeI CAATTG 2 cut(s) 534, 1057
MflI RGATCY 4 cut(s) 307, 622, 906, 1406
MhlI GDGCHC 3 cut(s) 1045, 1146, 1464
MlsI TGGCCA 2 cut(s) 150, 1473
MluCI AATT 9 cut(s) 49, 63, 93, 278, 534, 888, 1057, 1212, 1226
MluNI TGGCCA 2 cut(s) 150, 1473
MlyI GAGTC 2 cut(s) 234, 1213
MmeI TCCRAC 3 cut(s) 97, 193, 285
Mox20I TGGCCA 2 cut(s) 150, 1473
MscI TGGCCA 2 cut(s) 150, 1473
MseI TTAA 3 cut(s) 48, 545, 1491
Msp20I TGGCCA 2 cut(s) 150, 1473
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 5 cut(s) 323, 599, 620, 708, 1369
MspR9I CCNGG 2 cut(s) 709, 937
MunI CAATTG 2 cut(s) 534, 1057
Mva1269I GAATGC 2 cut(s) 650, 1282
MvaI CCWGG 1 cut(s) 937
MvnI CGCG 3 cut(s) 683, 1326, 1376
MwoI GCNNNNNNNGC 4 cut(s) 925, 1231, 1421, 1459
NciI CCSGG 1 cut(s) 709
NcoI CCATGG 1 cut(s) 134
NlaIII CATG 8 cut(s) 47, 138, 157, 206, 814, 918, 1010, 1238
NlaIV GGNNCC 2 cut(s) 309, 1143
NspI RCATGY 2 cut(s) 47, 1238
PciI ACATGT 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 669
PctI GAATGC 2 cut(s) 650, 1282
PfeI GAWTC 4 cut(s) 437, 704, 739, 835
PflMI CCANNNNNTGG 1 cut(s) 1175
PfoI TCCNGGA 1 cut(s) 707
PkrI GCNGC 6 cut(s) 132, 460, 529, 618, 1426, 1452
PleI GAGTC 2 cut(s) 234, 1213
PpsI GAGTC 2 cut(s) 234, 1213
PpuMI RGGWCCY 1 cut(s) 1512
PscI ACATGT 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 1512
Psp6I CCWGG 1 cut(s) 935
PspGI CCWGG 1 cut(s) 935
PspN4I GGNNCC 2 cut(s) 309, 1143
PspPI GGNCC 3 cut(s) 346, 685, 1512
PspPPI RGGWCCY 1 cut(s) 1512
PstNI CAGNNNCTG 1 cut(s) 1273
PsuI RGATCY 4 cut(s) 307, 622, 906, 1406
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 2 cut(s) 491, 797
RsaNI GTAC 2 cut(s) 490, 796
SaqAI TTAA 3 cut(s) 48, 545, 1491
SatI GCNGC 6 cut(s) 131, 459, 528, 617, 1425, 1451
Sau96I GGNCC 3 cut(s) 346, 685, 1512
ScaI AGTACT 1 cut(s) 797
SchI GAGTC 2 cut(s) 234, 1213
ScrFI CCNGG 2 cut(s) 709, 937
SduI GDGCHC 3 cut(s) 1045, 1146, 1464
SexAI ACCWGGT 1 cut(s) 935
SfaNI GCATC 4 cut(s) 117, 147, 709, 1069
SinI GGWCC 2 cut(s) 346, 1512
Sse9I AATT 9 cut(s) 49, 63, 93, 278, 534, 888, 1057, 1212, 1226
SsiI CCGC 4 cut(s) 617, 668, 683, 1326
SspMI CTAG 3 cut(s) 567, 1091, 1416
StyD4I CCNGG 2 cut(s) 707, 935
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 6 cut(s) 303, 343, 646, 898, 1106, 1432
TaqI TCGA 6 cut(s) 68, 427, 440, 672, 921, 1311
TasI AATT 9 cut(s) 49, 63, 93, 278, 534, 888, 1057, 1212, 1226
TatI WGTACW 1 cut(s) 795
TauI GCSGC 1 cut(s) 619
TfiI GAWTC 4 cut(s) 437, 704, 739, 835
Tru1I TTAA 3 cut(s) 48, 545, 1491
Tru9I TTAA 3 cut(s) 48, 545, 1491
TscAI CASTG 3 cut(s) 348, 847, 901
TseI GCWGC 5 cut(s) 130, 458, 527, 1424, 1450
TspDTI ATGAA 5 cut(s) 191, 202, 406, 827, 1246
TspGWI ACGGA 1 cut(s) 708
TspRI CASTG 3 cut(s) 348, 847, 901
Van91I CCANNNNNTGG 1 cut(s) 1175
VpaK11BI GGWCC 2 cut(s) 346, 1512
XagI CCTNNNNNAGG 1 cut(s) 870
XapI RAATTY 1 cut(s) 888
XceI RCATGY 2 cut(s) 47, 1238
XspI CTAG 3 cut(s) 567, 1091, 1416
ZrmI AGTACT 1 cut(s) 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.