Rh1AG274700

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000733
Physical Location & Seq
Forward (+)
50260210 .. 50262039
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG274700.1

Sequence Viewer

Length: 1413 bp
ATGGGAAAAGAGCTTCAAGTTGTGATGCTTCCATGGGCTTCCTTTGGCCATTTGTTGCCCTGCTTTCAACTTTCCATAGCCTTGGCCAAAGCCAAAGTTCATGTCTCCTTCATATCACCCCAAGAAACATTCAAAGGCTCCCCAAAATCTCACTTGATTTACAACCTTTCATACACCTTGTCCCCATTCCATTTCCTCGTTTGGATCCTGACTTCTTGCCGGAAGGAGCAGAGGCCAGTATCGACATATATACCCTTGGAAAAAAACCAAAACTTACAGATGGCATACGATCTTCTTCAAACACCCATCAAGCATTTCATTGCAGATAAAATGCCGGATTGGATAATTGCCGATTTCGCTGCTCATTGGGTGGTCGAAATTGCCAAAGAGTATGGTGTCCCACTTGCCTACTTCTCAGGTTTCAGTGCTGCAACCAGTGTTTTCTTTGGCCCACCTGAATATCTCACTGGTGCAAACAGAAACTATGCTCTCCCATCACCACAAAGCTTGACATCTCCACGAGAATGGGTCCCTTTTCCTTCTTTGGTGGCATTGAAGGAGCATGAAGCCATTTCTGTGCCTCAAAGGTCTTTCGCACCAAATAGTACAGGGATAAGTTTTATGTCAAGGATTGCCAAGATCATATCAGCAAGTCAAGTTTTGGCGATTCGTACTTGCAGTGAGATTGAAGGAGACTACTTGGAAGTGTACAAGAAAATTACTGGAAAGCCAGTGATTCCCATTGGTGTGCTTCCTCCAGATCAACCTGGGAAAAGGGAAAAAGGGGAAATAAACTCCGATGGGGCTATGTTTGATTGGCTGGATAAGCAAAAACCCAGGTCAATTGTGTTTGTGGGTTTTGGGAGTGAGTGTAGGCTGAGCAAAGAACAAGTTCATGAGATAGCTCATGGGCTGGAGCTATCAGAATTGCCATTTATTTGGGGACTCAGAAAACCCAATTCAGCTAACAGTGATGAAGTAGATGATTTTCTGCCTTTAGGTTTTGTTGACAGAACATCAGAGAAAGGGTTTGTTTGCTTCGGATGGGTGCCCCAAATGGAAATTTTGGGGCACCCATCAATTGGGGGCTCTTTGTTTCACTCTGGATGGGGTTCTGTGATTGAGACTCTGCAATTTGGACATTGCCTTGTTGTGTTACCCTTCATGTATGATCAGCCTTTGAATGCAAGGCTTTTGGTAGAGAAGGGTCTGGCTGCCGAAGTGAAGCGCAACGAAGACGGGTCGCTTAGTAGAGAGGAAATAGCAAAAACACTGAGGCTAGCAATGGTGGAAGGAGAGCACTTGAGAAGCAATGCGAGCAAAGCTGCTGCAGTTTTTGGAGATCACAAGCTGCACCAAGACCACTACATCAGTGCATTTGTCGATTATCTTAAAAATAAAGTTGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

470

Amino Acids

52.46

Weight (kDa)

6.61

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 280 - 447 8.9e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1048, 1071
AccB7I CCANNNNNTGG 1 cut(s) 1082
AclWI GGATC 2 cut(s) 199, 212
AcoI YGGCCR 2 cut(s) 46, 84
AcsI RAATTY 1 cut(s) 1062
AfaI GTAC 3 cut(s) 607, 673, 710
AfiI CCNNNNNNNGG 1 cut(s) 1082
AgsI TTSAA 7 cut(s) 17, 68, 133, 299, 556, 689, 1183
AjnI CCWGG 2 cut(s) 766, 836
AluBI AGCT 7 cut(s) 13, 507, 905, 919, 965, 1325, 1351
AluI AGCT 7 cut(s) 13, 507, 905, 919, 965, 1325, 1351
Alw21I GWGCWC 1 cut(s) 1302
Alw26I GTCTC 3 cut(s) 109, 687, 1118
AlwI GGATC 2 cut(s) 199, 212
AoxI GGCC 4 cut(s) 46, 84, 233, 448
ApeKI GCWGC 6 cut(s) 359, 428, 1214, 1325, 1328, 1351
ApoI RAATTY 1 cut(s) 1062
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
Asp700I GAANNNNTTC 1 cut(s) 891
AspLEI GCGC 1 cut(s) 1230
AspS9I GGNCC 2 cut(s) 449, 529
AsuHPI GGTGA 2 cut(s) 108, 489
AsuNHI GCTAGC 1 cut(s) 1279
AvaII GGWCC 1 cut(s) 529
BaeGI GKGCMC 2 cut(s) 1053, 1074
BalI TGGCCA 2 cut(s) 48, 86
BamHI GGATCC 1 cut(s) 204
BanI GGYRCC 2 cut(s) 1048, 1071
BanII GRGCYC 1 cut(s) 1091
BauI CACGAG 1 cut(s) 519
BbsI GAAGAC 1 cut(s) 1242
Bbv12I GWGCWC 1 cut(s) 1302
BbvI GCAGC 6 cut(s) 346, 415, 1201, 1312, 1315, 1338
BccI CCATC 7 cut(s) 274, 314, 502, 794, 1038, 1084, 1101
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BciT130I CCWGG 2 cut(s) 768, 838
BclI TGATCA 1 cut(s) 1171
BcoDI GTCTC 3 cut(s) 109, 687, 1118
BfaI CTAG 1 cut(s) 1280
BfmI CTRYAG 1 cut(s) 1329
BisI GCNGC 6 cut(s) 360, 429, 1215, 1326, 1329, 1352
BlpI GCTNAGC 1 cut(s) 878
BlsI GCNGC 6 cut(s) 361, 430, 1216, 1327, 1330, 1353
Bme1390I CCNGG 2 cut(s) 768, 838
Bme18I GGWCC 1 cut(s) 529
BmgT120I GGNCC 2 cut(s) 449, 529
BmiI GGNNCC 6 cut(s) 139, 206, 530, 531, 1050, 1073
BmrFI CCNGG 2 cut(s) 768, 838
BmsI GCATC 1 cut(s) 15
BmtI GCTAGC 1 cut(s) 1283
BpiI GAAGAC 1 cut(s) 1242
BpmI CTGGAG 2 cut(s) 741, 935
Bpu1102I GCTNAGC 1 cut(s) 878
BpuEI CTTGAG 1 cut(s) 1324
BsaJI CCNNGG 5 cut(s) 32, 81, 255, 767, 836
BsaXI ACNNNNNCTCC 2 cut(s) 856, 886
Bsc4I CCNNNNNNNGG 1 cut(s) 1082
Bse1I ACTGG 5 cut(s) 236, 435, 472, 727, 731
Bse3DI GCAATG 4 cut(s) 318, 1141, 1290, 1318
BseBI CCWGG 2 cut(s) 768, 838
BseDI CCNNGG 5 cut(s) 32, 81, 255, 767, 836
BseGI GGATG 2 cut(s) 1049, 1112
BseLI CCNNNNNNNGG 1 cut(s) 1082
BseMI GCAATG 4 cut(s) 318, 1141, 1290, 1318
BseMII CTCAG 4 cut(s) 429, 869, 961, 1265
BseNI ACTGG 5 cut(s) 236, 435, 472, 727, 731
BseSI GKGCMC 2 cut(s) 1053, 1074
BseXI GCAGC 6 cut(s) 346, 415, 1201, 1312, 1315, 1338
BsgI GTGCAG 1 cut(s) 1337
BshFI GGCC 4 cut(s) 48, 86, 235, 450
BshNI GGYRCC 2 cut(s) 1048, 1071
BsiHKAI GWGCWC 1 cut(s) 1302
BsiSI CCGG 2 cut(s) 220, 335
BslFI GGGAC 4 cut(s) 166, 383, 515, 957
BslI CCNNNNNNNGG 1 cut(s) 1082
BsmAI GTCTC 3 cut(s) 109, 687, 1118
BsmFI GGGAC 4 cut(s) 166, 383, 515, 957
BsmI GAATGC 1 cut(s) 1189
BsnI GGCC 4 cut(s) 48, 86, 235, 450
Bsp1286I GDGCHC 4 cut(s) 1053, 1074, 1091, 1302
Bsp1407I TGTACA 1 cut(s) 708
Bsp143I GATC 6 cut(s) 204, 289, 639, 760, 1171, 1342
Bsp1720I GCTNAGC 1 cut(s) 878
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 4 cut(s) 48, 86, 235, 450
BspCNI CTCAG 4 cut(s) 428, 870, 960, 1266
BspHI TCATGA 1 cut(s) 895
BspLI GGNNCC 6 cut(s) 139, 206, 530, 531, 1050, 1073
BspMAI CTGCAG 1 cut(s) 1333
BspOI GCTAGC 1 cut(s) 1283
BspPI GGATC 2 cut(s) 199, 212
BspT107I GGYRCC 2 cut(s) 1048, 1071
BsrDI GCAATG 4 cut(s) 318, 1141, 1290, 1318
BsrGI TGTACA 1 cut(s) 708
BsrI ACTGG 5 cut(s) 236, 435, 472, 727, 731
BssECI CCNNGG 5 cut(s) 32, 81, 255, 767, 836
BssMI GATC 6 cut(s) 204, 289, 639, 760, 1171, 1342
BssSI CACGAG 1 cut(s) 519
BssT1I CCWWGG 3 cut(s) 32, 81, 255
Bst2BI CACGAG 1 cut(s) 519
Bst2UI CCWGG 2 cut(s) 768, 838
Bst4CI ACNGT 1 cut(s) 971
BstAUI TGTACA 1 cut(s) 708
BstC8I GCNNGC 2 cut(s) 1281, 1318
BstDEI CTNAG 5 cut(s) 415, 878, 947, 1247, 1274
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 1049, 1112
BstHHI GCGC 1 cut(s) 1230
BstKTI GATC 6 cut(s) 207, 292, 642, 763, 1174, 1345
BstMAI GTCTC 3 cut(s) 109, 687, 1118
BstMBI GATC 6 cut(s) 204, 289, 639, 760, 1171, 1342
BstMWI GCNNNNNNNGC 4 cut(s) 356, 826, 1317, 1322
BstNI CCWGG 2 cut(s) 768, 838
BstSCI CCNGG 2 cut(s) 766, 836
BstSFI CTRYAG 1 cut(s) 1329
BstSLI GKGCMC 2 cut(s) 1053, 1074
BstV1I GCAGC 6 cut(s) 346, 415, 1201, 1312, 1315, 1338
BstV2I GAAGAC 1 cut(s) 1242
BstX2I RGATCY 1 cut(s) 204
BstXI CCANNNNNNTGG 3 cut(s) 82, 525, 939
BstYI RGATCY 1 cut(s) 204
BsuRI GGCC 4 cut(s) 48, 86, 235, 450
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 2 cut(s) 1049, 1112
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 8 cut(s) 430, 442, 465, 685, 738, 976, 1271, 1378
Cac8I GCNNGC 2 cut(s) 1281, 1318
CciI TCATGA 1 cut(s) 895
CfoI GCGC 1 cut(s) 1230
Cfr13I GGNCC 2 cut(s) 449, 529
Csp6I GTAC 3 cut(s) 606, 672, 709
CspCI CAANNNNNGTGG 2 cut(s) 489, 524
CviAII CATG 6 cut(s) 33, 101, 563, 896, 908, 1165
CviQI GTAC 3 cut(s) 606, 672, 709
DdeI CTNAG 5 cut(s) 415, 878, 947, 1247, 1274
DpnI GATC 6 cut(s) 206, 291, 641, 762, 1173, 1344
DpnII GATC 6 cut(s) 204, 289, 639, 760, 1171, 1342
EaeI YGGCCR 2 cut(s) 46, 84
Eco130I CCWWGG 3 cut(s) 32, 81, 255
Eco24I GRGCYC 1 cut(s) 1091
Eco47I GGWCC 1 cut(s) 529
EcoO109I RGGNCCY 1 cut(s) 529
EcoRII CCWGG 2 cut(s) 766, 836
EcoT14I CCWWGG 3 cut(s) 32, 81, 255
EcoT38I GRGCYC 1 cut(s) 1091
ErhI CCWWGG 3 cut(s) 32, 81, 255
FaeI CATG 6 cut(s) 36, 104, 566, 899, 911, 1168
FaqI GGGAC 4 cut(s) 166, 383, 515, 957
FatI CATG 6 cut(s) 32, 100, 562, 895, 907, 1164
FbaI TGATCA 1 cut(s) 1171
Fnu4HI GCNGC 6 cut(s) 360, 429, 1215, 1326, 1329, 1352
FokI GGATG 2 cut(s) 1056, 1119
FriOI GRGCYC 1 cut(s) 1091
Fsp4HI GCNGC 6 cut(s) 360, 429, 1215, 1326, 1329, 1352
FspBI CTAG 1 cut(s) 1280
GlaI GCGC 1 cut(s) 1229
GluI GCNGC 6 cut(s) 360, 429, 1215, 1326, 1329, 1352
GsuI CTGGAG 2 cut(s) 741, 935
HaeIII GGCC 4 cut(s) 48, 86, 235, 450
HapII CCGG 2 cut(s) 220, 335
HhaI GCGC 1 cut(s) 1230
Hin1II CATG 6 cut(s) 36, 104, 566, 899, 911, 1168
Hin6I GCGC 1 cut(s) 1228
HinP1I GCGC 1 cut(s) 1228
HincII GTYRAC 1 cut(s) 1009
HindII GTYRAC 1 cut(s) 1009
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 4 cut(s) 667, 736, 945, 1126
HpaII CCGG 2 cut(s) 220, 335
HphI GGTGA 2 cut(s) 108, 489
Hpy166II GTNNAC 2 cut(s) 709, 1009
Hpy188I TCNGA 5 cut(s) 799, 925, 950, 1021, 1043
Hpy188III TCNNGA 4 cut(s) 208, 758, 896, 1104
Hpy8I GTNNAC 2 cut(s) 709, 1009
HpyAV CCTTC 8 cut(s) 118, 217, 549, 550, 683, 1171, 1198, 1286
HpyCH4III ACNGT 1 cut(s) 971
HpyF10VI GCNNNNNNNGC 4 cut(s) 356, 826, 1317, 1322
HpyF3I CTNAG 5 cut(s) 415, 878, 947, 1247, 1274
Hsp92II CATG 6 cut(s) 36, 104, 566, 899, 911, 1168
HspAI GCGC 1 cut(s) 1228
KflI GGGWCCC 1 cut(s) 529
Ksp22I TGATCA 1 cut(s) 1171
Kzo9I GATC 6 cut(s) 204, 289, 639, 760, 1171, 1342
LmnI GCTCC 4 cut(s) 143, 226, 559, 916
Lsp1109I GCAGC 6 cut(s) 346, 415, 1201, 1312, 1315, 1338
LweI GCATC 1 cut(s) 15
MaeI CTAG 1 cut(s) 1280
MaeIII GTNAC 1 cut(s) 1155
MalI GATC 6 cut(s) 206, 291, 641, 762, 1173, 1344
MboI GATC 6 cut(s) 204, 289, 639, 760, 1171, 1342
MboII GAAGA 3 cut(s) 284, 287, 1247
MfeI CAATTG 2 cut(s) 843, 1080
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 4 cut(s) 1053, 1074, 1091, 1302
MlsI TGGCCA 2 cut(s) 48, 86
MluNI TGGCCA 2 cut(s) 48, 86
MlyI GAGTC 2 cut(s) 939, 1120
MnlI CCTC 6 cut(s) 206, 225, 591, 765, 1249, 1269
Mox20I TGGCCA 2 cut(s) 48, 86
MroXI GAANNNNTTC 1 cut(s) 891
MscI TGGCCA 2 cut(s) 48, 86
MseI TTAA 2 cut(s) 1392, 1411
MslI CAYNNNNRTG 3 cut(s) 523, 575, 746
Msp20I TGGCCA 2 cut(s) 48, 86
MspI CCGG 2 cut(s) 220, 335
MspR9I CCNGG 2 cut(s) 768, 838
MunI CAATTG 2 cut(s) 843, 1080
Mva1269I GAATGC 1 cut(s) 1189
MvaI CCWGG 2 cut(s) 768, 838
MwoI GCNNNNNNNGC 4 cut(s) 356, 826, 1317, 1322
NcoI CCATGG 1 cut(s) 32
NdeII GATC 6 cut(s) 204, 289, 639, 760, 1171, 1342
NheI GCTAGC 1 cut(s) 1279
NlaIII CATG 6 cut(s) 36, 104, 566, 899, 911, 1168
NlaIV GGNNCC 6 cut(s) 139, 206, 530, 531, 1050, 1073
PagI TCATGA 1 cut(s) 895
PctI GAATGC 1 cut(s) 1189
PdmI GAANNNNTTC 1 cut(s) 891
PfeI GAWTC 2 cut(s) 667, 736
PflMI CCANNNNNTGG 1 cut(s) 1082
PkrI GCNGC 6 cut(s) 361, 430, 1216, 1327, 1330, 1353
PleI GAGTC 2 cut(s) 939, 1120
PpsI GAGTC 2 cut(s) 939, 1120
PpuMI RGGWCCY 1 cut(s) 529
Psp5II RGGWCCY 1 cut(s) 529
Psp6I CCWGG 2 cut(s) 766, 836
PspGI CCWGG 2 cut(s) 766, 836
PspN4I GGNNCC 6 cut(s) 139, 206, 530, 531, 1050, 1073
PspPI GGNCC 2 cut(s) 449, 529
PspPPI RGGWCCY 1 cut(s) 529
PstI CTGCAG 1 cut(s) 1333
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 3 cut(s) 607, 673, 710
RsaNI GTAC 3 cut(s) 606, 672, 709
RseI CAYNNNNRTG 3 cut(s) 523, 575, 746
SaqAI TTAA 2 cut(s) 1392, 1411
SatI GCNGC 6 cut(s) 360, 429, 1215, 1326, 1329, 1352
Sau3AI GATC 6 cut(s) 204, 289, 639, 760, 1171, 1342
Sau96I GGNCC 2 cut(s) 449, 529
SchI GAGTC 2 cut(s) 939, 1120
ScrFI CCNGG 2 cut(s) 768, 838
SduI GDGCHC 4 cut(s) 1053, 1074, 1091, 1302
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 1329
SinI GGWCC 1 cut(s) 529
SmiMI CAYNNNNRTG 3 cut(s) 523, 575, 746
SmlI CTYRAG 1 cut(s) 1303
SmoI CTYRAG 1 cut(s) 1303
SspMI CTAG 1 cut(s) 1280
StyD4I CCNGG 2 cut(s) 766, 836
StyI CCWWGG 3 cut(s) 32, 81, 255
TaaI ACNGT 1 cut(s) 971
TaqI TCGA 3 cut(s) 242, 375, 1383
TatI WGTACW 2 cut(s) 605, 708
TfiI GAWTC 2 cut(s) 667, 736
Tru1I TTAA 2 cut(s) 1392, 1411
Tru9I TTAA 2 cut(s) 1392, 1411
TscAI CASTG 8 cut(s) 430, 442, 472, 685, 738, 976, 1278, 1378
TseI GCWGC 6 cut(s) 359, 428, 1214, 1325, 1328, 1351
TspDTI ATGAA 8 cut(s) 89, 100, 159, 307, 579, 884, 990, 1153
TspRI CASTG 8 cut(s) 430, 442, 472, 685, 738, 976, 1278, 1378
Van91I CCANNNNNTGG 1 cut(s) 1082
VpaK11BI GGWCC 1 cut(s) 529
XapI RAATTY 1 cut(s) 1062
XmnI GAANNNNTTC 1 cut(s) 891
XspI CTAG 1 cut(s) 1280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.