RLG00000028153

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000733
Physical Location & Seq
Forward (+)
19505514 .. 19506411
898 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028153

Sequence Viewer

Length: 723 bp
ATGGAGGAAGAATTTCATGTTGTGATAGTTCCATGGTCTGCCTTTGGCCATATGATTCCTTTACTTCAACTCTCCATAGCCTTAGCAAAAGCCAATGGATTTAGAACCTTTCATTACACTATTTTCACTTCCAATGCCTGTTGCCCTGTTCTGGATGCTGATCGGCTCTTGCCAGAAGGCACCGAGGCCACTGTAGTGCCTTTTGAAAAGATCCACCACTTGAAGCTCACTGGGTGGTTGACACGGCTAAAGAGTATGGTGTTTCTCTGGCCTACTTCTCTCCTTTCTGTTCCGTGCGCTACCAATGTCATGACTGGCTCACCAGAACATCTAATCAGGGTCCGCCATCACCCGGAAAGCTGGACATCCCCGACAGACTGGCTCCTTTCCGTCGACCTTGTAGCGTTTAAAGAGGTTTTATGGTGCAAATGGACAAATGGTTCTGGGATAAGTGATGCTGTAAGGCTTGCCAAGATTGTATCATCGAGTCAAGTACTAGCCGTTGGAACTTGCAACGAATTTGAAGGAGAATACTTGGATGTTTACGCAAAAATCACCAGAAAACATGTGATTCCCACAGGTTTGCTATCTCCAGAGAAATCAAATACGGATAACATCACTGTGGGTTCAGGGCGTTATGTGGAGCGTTATGTGATGTTTGATTGGCTTGATAAGCAAAATCCTAGGTCTGTTGATTTTGCTATCTCCAGTGAACCCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

241

Amino Acids

26.96

Weight (kDa)

6.13

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccI GTMKAC 1 cut(s) 393
AciI CCGC 1 cut(s) 343
AclWI GGATC 1 cut(s) 205
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 2 cut(s) 11, 518
AdeI CACNNNGTG 1 cut(s) 234
AfaI GTAC 1 cut(s) 495
AfiI CCNNNNNNNGG 2 cut(s) 151, 352
AflIII ACRYGT 1 cut(s) 565
AgsI TTSAA 4 cut(s) 68, 206, 223, 524
AleI CACNNNNGTG 1 cut(s) 194
AloI GAACNNNNNNTCC 2 cut(s) 424, 456
AluBI AGCT 2 cut(s) 226, 360
AluI AGCT 2 cut(s) 226, 360
AlwI GGATC 1 cut(s) 205
AoxI GGCC 3 cut(s) 46, 186, 269
ApoI RAATTY 2 cut(s) 11, 518
Asp700I GAANNNNTTC 1 cut(s) 12
AspA2I CCTAGG 1 cut(s) 683
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 340
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 3 cut(s) 312, 341, 547
AvaII GGWCC 1 cut(s) 340
AvrII CCTAGG 1 cut(s) 683
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 1 cut(s) 179
BccI CCATC 1 cut(s) 354
BceAI ACGGC 2 cut(s) 260, 485
BcnI CCSGG 1 cut(s) 353
BfaI CTAG 2 cut(s) 497, 684
BfmI CTRYAG 1 cut(s) 192
BlnI CCTAGG 1 cut(s) 683
BmcAI AGTACT 1 cut(s) 495
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 3 cut(s) 181, 341, 383
BmrFI CCNGG 1 cut(s) 353
BmrI ACTGGG 1 cut(s) 240
BmsI GCATC 2 cut(s) 145, 445
BmuI ACTGGG 1 cut(s) 240
BpmI CTGGAG 2 cut(s) 576, 691
Bpu10I CCTNAGC 1 cut(s) 82
BpuMI CCSGG 1 cut(s) 353
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 3 cut(s) 32, 183, 683
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 352
Bse1I ACTGG 4 cut(s) 235, 319, 383, 708
Bse8I GATNNNNATC 1 cut(s) 159
BseDI CCNNGG 3 cut(s) 32, 183, 683
BseGI GGATG 3 cut(s) 160, 365, 544
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 151, 352
BseNI ACTGG 4 cut(s) 235, 319, 383, 708
BshFI GGCC 3 cut(s) 48, 188, 271
BshNI GGYRCC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 151, 352
BsnI GGCC 3 cut(s) 48, 188, 271
Bsp143I GATC 2 cut(s) 160, 210
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 1 cut(s) 343
BspANI GGCC 3 cut(s) 48, 188, 271
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 3 cut(s) 181, 341, 383
BspPI GGATC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 179
BsrI ACTGG 4 cut(s) 235, 319, 383, 708
BssECI CCNNGG 3 cut(s) 32, 183, 683
BssMI GATC 2 cut(s) 160, 210
BssT1I CCWWGG 2 cut(s) 32, 683
Bst4CI ACNGT 2 cut(s) 193, 622
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 3 cut(s) 160, 365, 544
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 2 cut(s) 163, 213
BstMBI GATC 2 cut(s) 160, 210
BstMWI GCNNNNNNNGC 1 cut(s) 673
BstNSI RCATGY 1 cut(s) 569
BstSCI CCNGG 1 cut(s) 351
BstSFI CTRYAG 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
BsuRI GGCC 3 cut(s) 48, 188, 271
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 3 cut(s) 160, 365, 544
BtsIMutI CAGTG 4 cut(s) 189, 228, 618, 715
Cac8I GCNNGC 1 cut(s) 468
CciI TCATGA 1 cut(s) 309
CfoI GCGC 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 340
Csp6I GTAC 1 cut(s) 494
CviAII CATG 4 cut(s) 17, 33, 310, 566
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 1 cut(s) 82
DpnI GATC 2 cut(s) 162, 212
DpnII GATC 2 cut(s) 160, 210
DraI TTTAAA 1 cut(s) 409
DraIII CACNNNGTG 1 cut(s) 234
EaeI YGGCCR 1 cut(s) 46
EciI GGCGGA 1 cut(s) 332
Eco130I CCWWGG 2 cut(s) 32, 683
Eco47I GGWCC 1 cut(s) 340
EcoT14I CCWWGG 2 cut(s) 32, 683
ErhI CCWWGG 2 cut(s) 32, 683
FaeI CATG 4 cut(s) 20, 36, 313, 569
FatI CATG 4 cut(s) 16, 32, 309, 565
FauNDI CATATG 1 cut(s) 51
FblI GTMKAC 1 cut(s) 393
FokI GGATG 3 cut(s) 167, 352, 551
FspBI CTAG 2 cut(s) 497, 684
GlaI GCGC 1 cut(s) 298
GsuI CTGGAG 2 cut(s) 576, 691
HaeIII GGCC 3 cut(s) 48, 188, 271
HapII CCGG 1 cut(s) 353
HhaI GCGC 1 cut(s) 299
Hin1II CATG 4 cut(s) 20, 36, 313, 569
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HincII GTYRAC 2 cut(s) 240, 394
HindII GTYRAC 2 cut(s) 240, 394
HinfI GANTC 3 cut(s) 55, 487, 571
HpaII CCGG 1 cut(s) 353
HphI GGTGA 3 cut(s) 312, 341, 547
Hpy166II GTNNAC 4 cut(s) 240, 394, 544, 713
Hpy188III TCNNGA 3 cut(s) 152, 310, 593
Hpy8I GTNNAC 4 cut(s) 240, 394, 544, 713
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 2 cut(s) 170, 518
HpyCH4III ACNGT 2 cut(s) 193, 622
HpyCH4V TGCA 2 cut(s) 426, 513
HpyF10VI GCNNNNNNNGC 1 cut(s) 673
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 4 cut(s) 20, 36, 313, 569
HspAI GCGC 1 cut(s) 297
Kzo9I GATC 2 cut(s) 160, 210
LmnI GCTCC 2 cut(s) 387, 643
LweI GCATC 2 cut(s) 145, 445
MaeI CTAG 2 cut(s) 497, 684
MalI GATC 2 cut(s) 162, 212
MboI GATC 2 cut(s) 160, 210
MboII GAAGA 1 cut(s) 20
MflI RGATCY 1 cut(s) 210
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 2 cut(s) 11, 518
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 1 cut(s) 496
MmeI TCCRAC 1 cut(s) 484
MnlI CCTC 2 cut(s) 178, 406
Mox20I TGGCCA 1 cut(s) 48
MroXI GAANNNNTTC 1 cut(s) 12
MscI TGGCCA 1 cut(s) 48
MseI TTAA 1 cut(s) 408
MslI CAYNNNNRTG 2 cut(s) 194, 620
Msp20I TGGCCA 1 cut(s) 48
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 1 cut(s) 353
MwoI GCNNNNNNNGC 1 cut(s) 673
NciI CCSGG 1 cut(s) 353
NcoI CCATGG 1 cut(s) 32
NdeI CATATG 1 cut(s) 51
NdeII GATC 2 cut(s) 160, 210
NlaIII CATG 4 cut(s) 20, 36, 313, 569
NlaIV GGNNCC 3 cut(s) 181, 341, 383
NspI RCATGY 1 cut(s) 569
OliI CACNNNNGTG 1 cut(s) 194
PagI TCATGA 1 cut(s) 309
PciI ACATGT 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 2 cut(s) 55, 571
PleI GAGTC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 495
PscI ACATGT 1 cut(s) 565
PspN4I GGNNCC 3 cut(s) 181, 341, 383
PspPI GGNCC 1 cut(s) 340
PsuI RGATCY 1 cut(s) 210
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
RseI CAYNNNNRTG 2 cut(s) 194, 620
SalI GTCGAC 1 cut(s) 392
SaqAI TTAA 1 cut(s) 408
Sau3AI GATC 2 cut(s) 160, 210
Sau96I GGNCC 1 cut(s) 340
ScaI AGTACT 1 cut(s) 495
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 1 cut(s) 353
SetI ASST 7 cut(s) 110, 228, 362, 399, 417, 583, 689
SfaNI GCATC 2 cut(s) 145, 445
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 340
SmiMI CAYNNNNRTG 2 cut(s) 194, 620
Sse9I AATT 2 cut(s) 11, 518
SsiI CCGC 1 cut(s) 343
SspMI CTAG 2 cut(s) 497, 684
StyD4I CCNGG 1 cut(s) 351
StyI CCWWGG 2 cut(s) 32, 683
TaaI ACNGT 2 cut(s) 193, 622
TaqI TCGA 2 cut(s) 393, 485
TasI AATT 2 cut(s) 11, 518
TatI WGTACW 1 cut(s) 493
TfiI GAWTC 2 cut(s) 55, 571
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 4 cut(s) 196, 235, 625, 715
TspDTI ATGAA 2 cut(s) 5, 101
TspGWI ACGGA 3 cut(s) 282, 379, 623
TspRI CASTG 4 cut(s) 196, 235, 625, 715
VpaK11BI GGWCC 1 cut(s) 340
XapI RAATTY 2 cut(s) 11, 518
XceI RCATGY 1 cut(s) 569
XmaJI CCTAGG 1 cut(s) 683
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 2 cut(s) 497, 684
ZrmI AGTACT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.