RchiOBHm_Chr1g0358321

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000733
Physical Location & Seq
Forward (+)
50378172 .. 50378507
336 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58349

Sequence Viewer

Length: 336 bp
ATGGGAAAAGAGCTTCAAGTTGTGTTGCTTCCATGGGCTTCCTTTGGCCATTTGTTGCCCTACTTTCAACTTTCCATAGCCTTGGCCAAAGCCAAAGTTCATGTTTCCTTCATATCAACCCCAAGAAACATTCAAAGGCTCCCCAAAATCTTACTTGATTTACAACCTTTCATCCACCTTGTCCCCATTCCATTTCCTCGTTTGGATCCTAACTTCTTGCCGGAAGGAGCCGAGGCCAGTATCCAGGCCCGGCCTTGCCCAAGGGCAACCTTGGCGACAGCCCAGGGCCCAAGGCAAGGTGGGGCAACGCATATATATATATATATATATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

111

Amino Acids

12.38

Weight (kDa)

9.8

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 200, 213
AcoI YGGCCR 2 cut(s) 46, 84
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 3 cut(s) 17, 68, 134
AjnI CCWGG 2 cut(s) 243, 282
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
AlwI GGATC 2 cut(s) 200, 213
AoxI GGCC 6 cut(s) 46, 84, 234, 246, 251, 286
ApaI GGGCCC 1 cut(s) 290
AspS9I GGNCC 3 cut(s) 247, 286, 287
AsuC2I CCSGG 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 290
BalI TGGCCA 2 cut(s) 48, 86
BamHI GGATCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 290
BciT130I CCWGG 2 cut(s) 245, 284
BciVI GTATCC 1 cut(s) 251
BcnI CCSGG 1 cut(s) 250
BfuI GTATCC 1 cut(s) 251
Bme1390I CCNGG 3 cut(s) 245, 250, 284
BmgT120I GGNCC 3 cut(s) 247, 286, 287
BmiI GGNNCC 4 cut(s) 140, 207, 229, 288
BmrFI CCNGG 3 cut(s) 245, 250, 284
BpuMI CCSGG 1 cut(s) 250
BsaJI CCNNGG 8 cut(s) 32, 81, 231, 260, 270, 282, 283, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 237
BseBI CCWGG 2 cut(s) 245, 284
BseDI CCNNGG 8 cut(s) 32, 81, 231, 260, 270, 282, 283, 290
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 237
BseSI GKGCMC 1 cut(s) 290
BshFI GGCC 6 cut(s) 48, 86, 236, 248, 253, 288
BsiSI CCGG 2 cut(s) 221, 250
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 6 cut(s) 48, 86, 236, 248, 253, 288
Bsp120I GGGCCC 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 1 cut(s) 205
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 6 cut(s) 48, 86, 236, 248, 253, 288
BspLI GGNNCC 4 cut(s) 140, 207, 229, 288
BspPI GGATC 2 cut(s) 200, 213
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 8 cut(s) 32, 81, 231, 260, 270, 282, 283, 290
BssMI GATC 1 cut(s) 205
BssT1I CCWWGG 5 cut(s) 32, 81, 260, 270, 290
Bst2UI CCWGG 2 cut(s) 245, 284
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 2 cut(s) 245, 284
BstSCI CCNGG 3 cut(s) 243, 248, 282
BstSLI GKGCMC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 205
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 1 cut(s) 205
BsuI GTATCC 1 cut(s) 251
BsuRI GGCC 6 cut(s) 48, 86, 236, 248, 253, 288
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 1 cut(s) 171
Cfr13I GGNCC 3 cut(s) 247, 286, 287
CviAII CATG 2 cut(s) 33, 101
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
EaeI YGGCCR 2 cut(s) 46, 84
Eco130I CCWWGG 5 cut(s) 32, 81, 260, 270, 290
Eco24I GRGCYC 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 286
EcoRII CCWGG 2 cut(s) 243, 282
EcoT14I CCWWGG 5 cut(s) 32, 81, 260, 270, 290
EcoT38I GRGCYC 1 cut(s) 290
ErhI CCWWGG 5 cut(s) 32, 81, 260, 270, 290
FaeI CATG 2 cut(s) 36, 104
FaqI GGGAC 1 cut(s) 167
FatI CATG 2 cut(s) 32, 100
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 290
HaeIII GGCC 6 cut(s) 48, 86, 236, 248, 253, 288
HapII CCGG 2 cut(s) 221, 250
Hin1II CATG 2 cut(s) 36, 104
HpaII CCGG 2 cut(s) 221, 250
HpyAV CCTTC 2 cut(s) 118, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
Hsp92II CATG 2 cut(s) 36, 104
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 2 cut(s) 144, 227
LpnPI CCDG 7 cut(s) 230, 234, 250, 257, 263, 269, 296
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 290
MlsI TGGCCA 2 cut(s) 48, 86
MluNI TGGCCA 2 cut(s) 48, 86
MnlI CCTC 2 cut(s) 207, 226
Mox20I TGGCCA 2 cut(s) 48, 86
MscI TGGCCA 2 cut(s) 48, 86
Msp20I TGGCCA 2 cut(s) 48, 86
MspI CCGG 2 cut(s) 221, 250
MspR9I CCNGG 3 cut(s) 245, 250, 284
MvaI CCWGG 2 cut(s) 245, 284
MwoI GCNNNNNNNGC 1 cut(s) 272
NciI CCSGG 1 cut(s) 250
NcoI CCATGG 1 cut(s) 32
NdeII GATC 1 cut(s) 205
NlaIII CATG 2 cut(s) 36, 104
NlaIV GGNNCC 4 cut(s) 140, 207, 229, 288
NmeAIII GCCGAG 1 cut(s) 256
PasI CCCWGGG 1 cut(s) 283
Psp6I CCWGG 2 cut(s) 243, 282
PspGI CCWGG 2 cut(s) 243, 282
PspN4I GGNNCC 4 cut(s) 140, 207, 229, 288
PspOMI GGGCCC 1 cut(s) 286
PspPI GGNCC 3 cut(s) 247, 286, 287
PsuI RGATCY 1 cut(s) 205
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 3 cut(s) 247, 286, 287
ScrFI CCNGG 3 cut(s) 245, 250, 284
SduI GDGCHC 1 cut(s) 290
SetI ASST 5 cut(s) 15, 169, 180, 272, 301
StyD4I CCNGG 3 cut(s) 243, 248, 282
StyI CCWWGG 5 cut(s) 32, 81, 260, 270, 290
TspDTI ATGAA 3 cut(s) 89, 100, 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.