RLG00000028055

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000733
Physical Location & Seq
Reverse (-)
18141470 .. 18142885
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028055

Sequence Viewer

Length: 1416 bp
ATGGCAAAAGAGCTTCATGTTGTGATTCTTCCATGGTCTGCCTTTGGCCATATCATCCCTTTGATTCAACTCTCCATAGCCTTAGCAGAAGTTAAGATTCATGTCTCCTTCATATCTACCCCCAAAAACATCCAAAGGCTCCCTAAAATCCCACCTGAGTTGCAATCTCTCATAACAATAGTGCCTTTTCCTTTGCCAATTTTGGATGCTGCAGATCGGCGGTTGCCTGAAGGCGCCGAGGCCACGGTGGACATACCTTTCGAGAAAATGGACGACTTGAAGTTTGCATTCGATCTTCTACGACAACCCTTTAAGCAGTTCATTGCTGATCAAGTGCCGGATTGGATCATCACCGATTTTGCCGCCCACTGGGCGGTTGACGTTGCCAGAGAGTATGGTGTTCCTGTTGCCTACTTCTCGCCTTTCTCTGCTGCTACGCGTGTCTTCTGTGGTTCACCGGAACATCTCTCTCATGTTCCACCATCACCGGAAGTATTCACCTCCCCCCCGAAGTGGGTTCCTTTTCCATCTTTGGTAGCACTCAAGGAGTTTGAGGCAGTTCGTTTTCTTGCTGGCTTTTTTAATGTGAATCGTTCAGGGATAAGTGATGCTGAAAGGGTTGCCAAGATTGTATCAGCGAGTCAAGTAATAGCCATTCGTAGTTGCAATGAATTTGAAGGAGAGTACTTGGATTTGTACGCGAAACTCACCGGAAAACCTGTGATTCCCATCGGTTTGCTACCTCCAAAGGAATCAAAAAGGGAGTCGGGGAACGATGTGATTTTTGAGTGGCTTGATAAGCAGAAACCCAGGTCAGTTGTGTTTGTAGGGTTTGGGAGTGAGTGTAAGCTGAGCAAAGAACAAGTGCATGAGATAGCTCATGGTCTGGAGTTTTCAGAGTTGCCGTTTCTCTGGGCACTCAGAAAACCCAGTAGGGCTAGTACTGATGCTGAGGCTCTACCTCTAGGTTTTGTGGACAGAACATCAAAGAAAGGCCTTGTTTGCATGGGATGGGTGCCACAAATCGAAATTCTAGGGCATCCATCAGTCGGGGGCTCTCTGTTTCACTCTGGATGGGGTTCTGTGATTGAAACTCTGCAATTTGGGCATTGCCTTGTTGTGTTACCCTTAATTATTGATCAGCCACTGAATGCAAGGCTTCTGGTGGAGAAAGGTCTGGCTGCCGAAGTGAAACGCAACGAAGATGGGTCGTTTACCGCAGACGACATAGCCAAAACACTGAGGCTAGCAATGGTGGAAGAGGAAGGAGAGCACCTGAGAATCAATGCAAGGAAAGCTGCAGCTGTTTTTGGAGATGAGAAGCTGCACCAAGACCACTATCTTGGTGCATTTGTTGATTATCTCAAGAATAATGGTAGAAAAGGTCCTCTAGACAAGAATGATGACCCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

472

Amino Acids

52.25

Weight (kDa)

5.82

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 270 - 416 4.1e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 233, 1015
AccII CGCG 2 cut(s) 439, 701
AciI CCGC 4 cut(s) 220, 363, 374, 1218
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 2 cut(s) 671, 1029
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 3 cut(s) 686, 698, 943
AfiI CCNNNNNNNGG 5 cut(s) 369, 373, 513, 514, 1049
AflIII ACRYGT 1 cut(s) 437
AgsI TTSAA 4 cut(s) 68, 280, 677, 1091
AjnI CCWGG 1 cut(s) 809
AluBI AGCT 6 cut(s) 13, 850, 878, 1298, 1304, 1324
AluI AGCT 6 cut(s) 13, 850, 878, 1298, 1304, 1324
Alw21I GWGCWC 1 cut(s) 1275
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 353
AlwNI CAGNNNCTG 1 cut(s) 1147
AoxI GGCC 3 cut(s) 46, 240, 994
ApeKI GCWGC 6 cut(s) 209, 431, 1181, 1298, 1301, 1324
ApoI RAATTY 2 cut(s) 671, 1029
ArsI GACNNNNNNTTYG 6 cut(s) 242, 266, 274, 298, 749, 781
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 1385
AsuHPI GGTGA 5 cut(s) 343, 447, 477, 490, 700
AsuNHI GCTAGC 1 cut(s) 1246
AvaII GGWCC 1 cut(s) 1385
BaeGI GKGCMC 1 cut(s) 919
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 2 cut(s) 233, 1015
BanII GRGCYC 1 cut(s) 1058
BbsI GAAGAC 1 cut(s) 436
Bbv12I GWGCWC 1 cut(s) 1275
BbvCI CCTCAGC 1 cut(s) 951
BbvI GCAGC 6 cut(s) 196, 418, 1168, 1285, 1311, 1313
BccI CCATC 7 cut(s) 490, 535, 737, 1005, 1051, 1068, 1199
BceAI ACGGC 1 cut(s) 889
BciT130I CCWGG 1 cut(s) 811
BclI TGATCA 2 cut(s) 328, 1138
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 5 cut(s) 939, 965, 1034, 1247, 1391
BfmI CTRYAG 2 cut(s) 210, 1299
BfoI RGCGCY 1 cut(s) 237
BglI GCCNNNNNGGC 1 cut(s) 371
BisI GCNGC 7 cut(s) 210, 363, 432, 1182, 1299, 1302, 1325
BlpI GCTNAGC 1 cut(s) 851
BlsI GCNGC 7 cut(s) 211, 364, 433, 1183, 1300, 1303, 1326
BmcAI AGTACT 2 cut(s) 686, 943
Bme1390I CCNGG 1 cut(s) 811
Bme18I GGWCC 1 cut(s) 1385
BmgT120I GGNCC 1 cut(s) 1385
BmiI GGNNCC 4 cut(s) 140, 235, 519, 1017
BmrFI CCNGG 1 cut(s) 811
BmrI ACTGGG 2 cut(s) 379, 924
BmsI GCATC 4 cut(s) 196, 598, 937, 1048
BmtI GCTAGC 1 cut(s) 1250
BmuI ACTGGG 2 cut(s) 379, 924
BpiI GAAGAC 1 cut(s) 436
BpmI CTGGAG 1 cut(s) 908
Bpu10I CCTNAGC 2 cut(s) 82, 951
Bpu1102I GCTNAGC 1 cut(s) 851
BpuEI CTTGAG 2 cut(s) 527, 1349
BsaBI GATNNNNATC 1 cut(s) 728
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 4 cut(s) 32, 237, 243, 809
BsaWI WCCGGW 3 cut(s) 457, 487, 710
BsaXI ACNNNNNCTCC 2 cut(s) 829, 859
Bsc4I CCNNNNNNNGG 5 cut(s) 369, 373, 513, 514, 1049
Bse1I ACTGG 2 cut(s) 374, 930
Bse3DI GCAATG 4 cut(s) 321, 673, 1108, 1257
Bse8I GATNNNNATC 1 cut(s) 728
BseBI CCWGG 1 cut(s) 811
BseDI CCNNGG 4 cut(s) 32, 237, 243, 809
BseGI GGATG 6 cut(s) 54, 129, 211, 1016, 1039, 1079
BseJI GATNNNNATC 1 cut(s) 728
BseLI CCNNNNNNNGG 5 cut(s) 369, 373, 513, 514, 1049
BseMI GCAATG 4 cut(s) 321, 673, 1108, 1257
BseMII CTCAG 6 cut(s) 147, 842, 934, 942, 1232, 1268
BseNI ACTGG 2 cut(s) 374, 930
BseSI GKGCMC 1 cut(s) 919
BseXI GCAGC 6 cut(s) 196, 418, 1168, 1285, 1311, 1313
BsgI GTGCAG 1 cut(s) 1310
Bsh1236I CGCG 2 cut(s) 439, 701
BshFI GGCC 3 cut(s) 48, 242, 996
BshNI GGYRCC 2 cut(s) 233, 1015
BsiHKAI GWGCWC 1 cut(s) 1275
BsiSI CCGG 4 cut(s) 338, 458, 488, 711
BslI CCNNNNNNNGG 5 cut(s) 369, 373, 513, 514, 1049
BsmAI GTCTC 1 cut(s) 109
BsmI GAATGC 2 cut(s) 287, 1156
BsnI GGCC 3 cut(s) 48, 242, 996
Bsp1286I GDGCHC 3 cut(s) 919, 1058, 1275
Bsp143I GATC 5 cut(s) 214, 292, 328, 345, 1138
Bsp1720I GCTNAGC 1 cut(s) 851
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 4 cut(s) 220, 363, 374, 1218
BspANI GGCC 3 cut(s) 48, 242, 996
BspCNI CTCAG 6 cut(s) 148, 843, 933, 943, 1233, 1269
BspFNI CGCG 2 cut(s) 439, 701
BspLI GGNNCC 4 cut(s) 140, 235, 519, 1017
BspMAI CTGCAG 2 cut(s) 214, 1303
BspOI GCTAGC 1 cut(s) 1250
BspPI GGATC 1 cut(s) 353
BspT107I GGYRCC 2 cut(s) 233, 1015
BsrDI GCAATG 4 cut(s) 321, 673, 1108, 1257
BsrI ACTGG 2 cut(s) 374, 930
BssECI CCNNGG 4 cut(s) 32, 237, 243, 809
BssMI GATC 5 cut(s) 214, 292, 328, 345, 1138
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 811
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 1 cut(s) 1254
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 574, 1248
BstDEI CTNAG 7 cut(s) 82, 156, 851, 920, 951, 1241, 1277
BstDSI CCRYGG 2 cut(s) 32, 243
BstF5I GGATG 6 cut(s) 54, 129, 211, 1016, 1039, 1079
BstFNI CGCG 2 cut(s) 439, 701
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 5 cut(s) 217, 295, 331, 348, 1141
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 5 cut(s) 214, 292, 328, 345, 1138
BstMWI GCNNNNNNNGC 5 cut(s) 371, 799, 1002, 1105, 1295
BstNI CCWGG 1 cut(s) 811
BstSCI CCNGG 1 cut(s) 809
BstSFI CTRYAG 2 cut(s) 210, 1299
BstSLI GKGCMC 1 cut(s) 919
BstUI CGCG 2 cut(s) 439, 701
BstV1I GCAGC 6 cut(s) 196, 418, 1168, 1285, 1311, 1313
BstV2I GAAGAC 1 cut(s) 436
BstXI CCANNNNNNTGG 1 cut(s) 1343
BsuRI GGCC 3 cut(s) 48, 242, 996
BtgI CCRYGG 2 cut(s) 32, 243
BtsCI GGATG 6 cut(s) 54, 129, 211, 1016, 1039, 1079
BtsIMutI CAGTG 3 cut(s) 367, 1145, 1238
Cac8I GCNNGC 2 cut(s) 574, 1248
CaiI CAGNNNCTG 1 cut(s) 1147
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 1385
Csp6I GTAC 3 cut(s) 685, 697, 942
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 7 cut(s) 17, 33, 101, 473, 869, 881, 1006
CviQI GTAC 3 cut(s) 685, 697, 942
DdeI CTNAG 7 cut(s) 82, 156, 851, 920, 951, 1241, 1277
DinI GGCGCC 1 cut(s) 235
DpnI GATC 5 cut(s) 216, 294, 330, 347, 1140
DpnII GATC 5 cut(s) 214, 292, 328, 345, 1138
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 1254
EarI CTCTTC 1 cut(s) 1254
Eco130I CCWWGG 1 cut(s) 32
Eco147I AGGCCT 1 cut(s) 996
Eco24I GRGCYC 1 cut(s) 1058
Eco47I GGWCC 1 cut(s) 1385
Eco57I CTGAAG 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 1385
EcoRII CCWGG 1 cut(s) 809
EcoT14I CCWWGG 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 1058
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 7 cut(s) 20, 36, 104, 476, 872, 884, 1009
FatI CATG 7 cut(s) 16, 32, 100, 472, 868, 880, 1005
FbaI TGATCA 2 cut(s) 328, 1138
Fnu4HI GCNGC 7 cut(s) 210, 363, 432, 1182, 1299, 1302, 1325
FokI GGATG 6 cut(s) 41, 116, 218, 1023, 1026, 1086
FriOI GRGCYC 1 cut(s) 1058
Fsp4HI GCNGC 7 cut(s) 210, 363, 432, 1182, 1299, 1302, 1325
FspBI CTAG 5 cut(s) 939, 965, 1034, 1247, 1391
GlaI GCGC 1 cut(s) 235
GluI GCNGC 7 cut(s) 210, 363, 432, 1182, 1299, 1302, 1325
GsuI CTGGAG 1 cut(s) 908
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 3 cut(s) 48, 242, 996
HapII CCGG 4 cut(s) 338, 458, 488, 711
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 7 cut(s) 20, 36, 104, 476, 872, 884, 1009
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 9 cut(s) 25, 64, 97, 589, 640, 724, 752, 764, 1281
HpaII CCGG 4 cut(s) 338, 458, 488, 711
HphI GGTGA 5 cut(s) 343, 447, 477, 490, 700
Hpy166II GTNNAC 5 cut(s) 250, 379, 455, 976, 1215
Hpy188I TCNGA 2 cut(s) 898, 923
Hpy188III TCNNGA 5 cut(s) 262, 887, 1071, 1366, 1391
Hpy8I GTNNAC 5 cut(s) 250, 379, 455, 976, 1215
HpyAV CCTTC 4 cut(s) 118, 224, 671, 1259
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 381
HpyF10VI GCNNNNNNNGC 5 cut(s) 371, 799, 1002, 1105, 1295
HpyF3I CTNAG 7 cut(s) 82, 156, 851, 920, 951, 1241, 1277
HpySE526I ACGT 1 cut(s) 381
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 7 cut(s) 20, 36, 104, 476, 872, 884, 1009
HspAI GCGC 1 cut(s) 234
KasI GGCGCC 1 cut(s) 233
Ksp22I TGATCA 2 cut(s) 328, 1138
Kzo9I GATC 5 cut(s) 214, 292, 328, 345, 1138
LmnI GCTCC 1 cut(s) 144
Lsp1109I GCAGC 6 cut(s) 196, 418, 1168, 1285, 1311, 1313
LweI GCATC 4 cut(s) 196, 598, 937, 1048
MaeI CTAG 5 cut(s) 939, 965, 1034, 1247, 1391
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 1 cut(s) 1122
MalI GATC 5 cut(s) 216, 294, 330, 347, 1140
MboI GATC 5 cut(s) 214, 292, 328, 345, 1138
MboII GAAGA 5 cut(s) 20, 287, 436, 1214, 1271
MhlI GDGCHC 3 cut(s) 919, 1058, 1275
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 5 cut(s) 198, 671, 1029, 1100, 1131
MluI ACGCGT 1 cut(s) 437
MluNI TGGCCA 1 cut(s) 48
Mly113I GGCGCC 1 cut(s) 234
MlyI GAGTC 2 cut(s) 649, 773
MnlI CCTC 9 cut(s) 232, 511, 547, 753, 946, 972, 1236, 1255, 1398
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MseI TTAA 4 cut(s) 93, 312, 582, 1130
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 1304
MspI CCGG 4 cut(s) 338, 458, 488, 711
MspR9I CCNGG 1 cut(s) 811
Mva1269I GAATGC 2 cut(s) 287, 1156
MvaI CCWGG 1 cut(s) 811
MvnI CGCG 2 cut(s) 439, 701
MwoI GCNNNNNNNGC 5 cut(s) 371, 799, 1002, 1105, 1295
NarI GGCGCC 1 cut(s) 234
NcoI CCATGG 1 cut(s) 32
NdeII GATC 5 cut(s) 214, 292, 328, 345, 1138
NheI GCTAGC 1 cut(s) 1246
NlaIII CATG 7 cut(s) 20, 36, 104, 476, 872, 884, 1009
NlaIV GGNNCC 4 cut(s) 140, 235, 519, 1017
NmeAIII GCCGAG 1 cut(s) 262
PceI AGGCCT 1 cut(s) 996
PctI GAATGC 2 cut(s) 287, 1156
PfeI GAWTC 7 cut(s) 25, 64, 97, 589, 724, 752, 1281
PkrI GCNGC 7 cut(s) 211, 364, 433, 1183, 1300, 1303, 1326
PleI GAGTC 2 cut(s) 648, 772
PluTI GGCGCC 1 cut(s) 237
PpsI GAGTC 2 cut(s) 648, 772
PpuMI RGGWCCY 1 cut(s) 1385
Psp5II RGGWCCY 1 cut(s) 1385
Psp6I CCWGG 1 cut(s) 809
PspGI CCWGG 1 cut(s) 809
PspN4I GGNNCC 4 cut(s) 140, 235, 519, 1017
PspPI GGNCC 1 cut(s) 1385
PspPPI RGGWCCY 1 cut(s) 1385
PstI CTGCAG 2 cut(s) 214, 1303
PstNI CAGNNNCTG 1 cut(s) 1147
PvuII CAGCTG 1 cut(s) 1304
RsaI GTAC 3 cut(s) 686, 698, 943
RsaNI GTAC 3 cut(s) 685, 697, 942
SaqAI TTAA 4 cut(s) 93, 312, 582, 1130
SatI GCNGC 7 cut(s) 210, 363, 432, 1182, 1299, 1302, 1325
Sau3AI GATC 5 cut(s) 214, 292, 328, 345, 1138
Sau96I GGNCC 1 cut(s) 1385
ScaI AGTACT 2 cut(s) 686, 943
SchI GAGTC 2 cut(s) 649, 773
ScrFI CCNGG 1 cut(s) 811
SduI GDGCHC 3 cut(s) 919, 1058, 1275
SfaNI GCATC 4 cut(s) 196, 598, 937, 1048
SfcI CTRYAG 2 cut(s) 210, 1299
SfoI GGCGCC 1 cut(s) 235
SinI GGWCC 1 cut(s) 1385
SmlI CTYRAG 2 cut(s) 542, 1364
SmoI CTYRAG 2 cut(s) 542, 1364
Sse9I AATT 5 cut(s) 198, 671, 1029, 1100, 1131
SseBI AGGCCT 1 cut(s) 996
SsiI CCGC 4 cut(s) 220, 363, 374, 1218
SspDI GGCGCC 1 cut(s) 233
SspMI CTAG 5 cut(s) 939, 965, 1034, 1247, 1391
StuI AGGCCT 1 cut(s) 996
StyD4I CCNGG 1 cut(s) 809
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 1 cut(s) 384
TaqI TCGA 3 cut(s) 261, 291, 1026
TasI AATT 5 cut(s) 198, 671, 1029, 1100, 1131
TatI WGTACW 2 cut(s) 684, 941
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 7 cut(s) 25, 64, 97, 589, 724, 752, 1281
Tru1I TTAA 4 cut(s) 93, 312, 582, 1130
Tru9I TTAA 4 cut(s) 93, 312, 582, 1130
TscAI CASTG 3 cut(s) 374, 1152, 1245
TseI GCWGC 6 cut(s) 209, 431, 1181, 1298, 1301, 1324
TspDTI ATGAA 5 cut(s) 5, 89, 100, 310, 684
TspRI CASTG 3 cut(s) 374, 1152, 1245
VpaK11BI GGWCC 1 cut(s) 1385
XapI RAATTY 2 cut(s) 671, 1029
XbaI TCTAGA 1 cut(s) 1390
XspI CTAG 5 cut(s) 939, 965, 1034, 1247, 1391
ZrmI AGTACT 2 cut(s) 686, 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.