Rw1G023670

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000733
Physical Location & Seq
Reverse (-)
49624824 .. 49626275
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G023670.1

Sequence Viewer

Length: 1452 bp
ATGAGCAAGCTCATTTCAGCAAAACATAACAATAATGGCAAAAGAGCTTCATGTTGTAATGCTCCGTGGTCTGCCTTTGGCCATATGATGCCCTTCTTTCAACTCTCCATAGCCTTGGCCAAAGCCAAAGTTCATGTCTCCTACATAGCCACCCCAAGAAACATTCAAAGGCTCCCCAAAATCTCACCTGATTTGCAACCTTTCATACACCTAGTCCCCATTCCATTTCCTCCTTTAGAACCTGACTTCTTGCCTGAAGGAGCCGAGGCGACTGTTGATGTGCCCTTCGAAAAAATCAACAACTTACAGATCGCGTATGATCTTCTCCAGAAACCCATCAAGCAATTCATTGCAGATCAAATGCCTGACTGTATAGTACCCGATTTCGCTGCTTATTGGGTAGTGGACATTGCCAAAGAGTATGGTGTTCCACTAGTCTACTTCTCTGCTTTCTCTGCAGCTAGCAGTGTATTCTTTGGGCCCTTGGAAAATCTCTCCGGTGTGAACAGAAACTACGCTCTTCCGTCACCCCAAAGCTTGACATCTCCACCAGAATGGATCACTTTTCCTTCTTTGGTGGCATTCAAGGAGTATGAAGCAATTTATGTGCCCCAAGGGTTTTGGGGTAAAAATAGTACTGGGATTAGTGGTGCTTCAAGGCTTGCCAAGGTTATATCAGCAAGTCAAGCTTTGGCAATTCGTACCTGTAATGAGATTGAAGGAGACTACTTGGGAGTGTACAAGAAAATTACTGGAAAGCCAGTGATTCCCATTGGTGTGCTTCCTCCGGAGAAACCTGGGAAAAGGGAAAATACGGAAATGAGCCCTGATGGGTTTATGTTTGATTGGCTCTATAAACAAAGCCCCAGGTCAGTGGTGTTTGTGGGATTTGGGAGTGAGTGTAAGCTGAGCAAAGAACAAGTTCATGAGATAGCTCATGGGCTGGAGCTATCAGAATTGCCGTTTGTTTGGGGAGTCAGAAAACCCAATGCAGCTAACGATGATGAAGTTGATGATTTTCTGCCTTTAGGTTTTGTTGACAGAACATCAGAGAAAGGGCTTGTTTGCTTTGGATGGGTGCCTCAAATGGAAATTTTGGGGCACCCATCTGTTGGGGGATCTTTGTTTCACTCTGGATGGGGTTCTGTGATTGAAACTCTGCAATTTGGGCATTGCCTTGTGTTGTTGCCCATCATTGTTGATCAGCCTTTGAATGCAAGGCTTTTGGTGGAGAAGGGTCTGGCTGCCGAAGTGAAGCGCAACGAAGACGGGTCGCTTAGTAGAGATGAAATAGCTAAAACACTGAGGCTAGCAATGGTGGAAGATGAAGGAGAGCACCTGAGAAGCAATGCGAGGAAAGCTGCTGCAGTTTTTGGAGATCACGAGTTGCACCAAGACCACTACATCGGTGCGTTTGTTGATTATCTCAAAAATAACGTCGCAAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

483

Amino Acids

53.43

Weight (kDa)

5.94

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 283 - 435 2.7e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1078, 1101
AccB7I CCANNNNNTGG 1 cut(s) 1112
AccI GTMKAC 1 cut(s) 438
AccII CGCG 1 cut(s) 314
AccIII TCCGGA 1 cut(s) 787
AclWI GGATC 2 cut(s) 566, 1126
AcoI YGGCCR 2 cut(s) 79, 117
AcsI RAATTY 1 cut(s) 1092
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 4 cut(s) 378, 637, 703, 740
AfiI CCNNNNNNNGG 1 cut(s) 1112
AgsI TTSAA 7 cut(s) 101, 167, 586, 657, 719, 1154, 1213
AhlI ACTAGT 1 cut(s) 433
AjnI CCWGG 2 cut(s) 796, 866
Alw21I GWGCWC 1 cut(s) 1338
Alw26I GTCTC 2 cut(s) 142, 717
AlwI GGATC 2 cut(s) 566, 1126
Aor13HI TCCGGA 1 cut(s) 787
AoxI GGCC 3 cut(s) 79, 117, 479
ApaI GGGCCC 1 cut(s) 483
ApeKI GCWGC 6 cut(s) 389, 458, 992, 1244, 1361, 1364
ApoI RAATTY 1 cut(s) 1092
ArsI GACNNNNNNTTYG 3 cut(s) 120, 152, 1422
Asp700I GAANNNNTTC 1 cut(s) 921
AspLEI GCGC 1 cut(s) 1260
AspS9I GGNCC 2 cut(s) 479, 480
AsuHPI GGTGA 2 cut(s) 177, 519
AsuII TTCGAA 1 cut(s) 288
AsuNHI GCTAGC 2 cut(s) 461, 1309
BaeGI GKGCMC 4 cut(s) 285, 483, 612, 1104
BalI TGGCCA 2 cut(s) 81, 119
BanI GGYRCC 2 cut(s) 1078, 1101
BanII GRGCYC 2 cut(s) 483, 827
BauI CACGAG 1 cut(s) 1382
BbsI GAAGAC 1 cut(s) 1272
Bbv12I GWGCWC 1 cut(s) 1338
BbvI GCAGC 6 cut(s) 376, 470, 1004, 1231, 1348, 1351
BccI CCATC 6 cut(s) 344, 824, 1068, 1114, 1131, 1199
BceAI ACGGC 1 cut(s) 946
BcgI CGANNNNNNTGC 2 cut(s) 371, 405
BciT130I CCWGG 2 cut(s) 798, 868
BclI TGATCA 1 cut(s) 1201
BcoDI GTCTC 2 cut(s) 142, 717
BcuI ACTAGT 1 cut(s) 433
BfaI CTAG 4 cut(s) 212, 434, 462, 1310
BfmI CTRYAG 2 cut(s) 456, 1365
BisI GCNGC 6 cut(s) 390, 459, 993, 1245, 1362, 1365
BlpI GCTNAGC 1 cut(s) 908
BlsI GCNGC 6 cut(s) 391, 460, 994, 1246, 1363, 1366
BmcAI AGTACT 1 cut(s) 637
Bme1390I CCNGG 2 cut(s) 798, 868
BmgT120I GGNCC 2 cut(s) 479, 480
BmiI GGNNCC 5 cut(s) 173, 262, 481, 1080, 1103
BmrFI CCNGG 2 cut(s) 798, 868
BmrI ACTGGG 1 cut(s) 648
BmsI GCATC 1 cut(s) 78
BmtI GCTAGC 2 cut(s) 465, 1313
BmuI ACTGGG 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 1272
BpmI CTGGAG 2 cut(s) 311, 965
Bpu1102I GCTNAGC 1 cut(s) 908
Bpu14I TTCGAA 1 cut(s) 288
BsaJI CCNNGG 8 cut(s) 65, 114, 264, 483, 613, 666, 797, 866
BsaWI WCCGGW 2 cut(s) 497, 787
BsaXI ACNNNNNCTCC 2 cut(s) 886, 916
Bsc4I CCNNNNNNNGG 1 cut(s) 1112
Bse1I ACTGG 3 cut(s) 643, 757, 761
Bse3DI GCAATG 5 cut(s) 348, 408, 1171, 1320, 1354
BseAI TCCGGA 1 cut(s) 787
BseBI CCWGG 2 cut(s) 798, 868
BseDI CCNNGG 8 cut(s) 65, 114, 264, 483, 613, 666, 797, 866
BseGI GGATG 2 cut(s) 1079, 1142
BseLI CCNNNNNNNGG 1 cut(s) 1112
BseMI GCAATG 5 cut(s) 348, 408, 1171, 1320, 1354
BseMII CTCAG 3 cut(s) 899, 1295, 1331
BseNI ACTGG 3 cut(s) 643, 757, 761
BseSI GKGCMC 4 cut(s) 285, 483, 612, 1104
BseXI GCAGC 6 cut(s) 376, 470, 1004, 1231, 1348, 1351
Bsh1236I CGCG 1 cut(s) 314
BshFI GGCC 3 cut(s) 81, 119, 481
BshNI GGYRCC 2 cut(s) 1078, 1101
BsiHKAI GWGCWC 1 cut(s) 1338
BsiSI CCGG 2 cut(s) 498, 788
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 1112
BsmAI GTCTC 2 cut(s) 142, 717
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 2 cut(s) 581, 1219
BsnI GGCC 3 cut(s) 81, 119, 481
Bsp119I TTCGAA 1 cut(s) 288
Bsp120I GGGCCC 1 cut(s) 479
Bsp1286I GDGCHC 6 cut(s) 285, 483, 612, 827, 1104, 1338
Bsp13I TCCGGA 1 cut(s) 787
Bsp1407I TGTACA 1 cut(s) 738
Bsp143I GATC 7 cut(s) 309, 319, 355, 558, 1118, 1201, 1378
Bsp1720I GCTNAGC 1 cut(s) 908
BspANI GGCC 3 cut(s) 81, 119, 481
BspCNI CTCAG 3 cut(s) 900, 1296, 1332
BspEI TCCGGA 1 cut(s) 787
BspFNI CGCG 1 cut(s) 314
BspHI TCATGA 1 cut(s) 925
BspLI GGNNCC 5 cut(s) 173, 262, 481, 1080, 1103
BspMAI CTGCAG 2 cut(s) 460, 1369
BspOI GCTAGC 2 cut(s) 465, 1313
BspPI GGATC 2 cut(s) 566, 1126
BspQI GCTCTTC 1 cut(s) 525
BspT104I TTCGAA 1 cut(s) 288
BspT107I GGYRCC 2 cut(s) 1078, 1101
BsrDI GCAATG 5 cut(s) 348, 408, 1171, 1320, 1354
BsrGI TGTACA 1 cut(s) 738
BsrI ACTGG 3 cut(s) 643, 757, 761
BssECI CCNNGG 8 cut(s) 65, 114, 264, 483, 613, 666, 797, 866
BssMI GATC 7 cut(s) 309, 319, 355, 558, 1118, 1201, 1378
BssSI CACGAG 1 cut(s) 1382
BssT1I CCWWGG 4 cut(s) 114, 483, 613, 666
Bst2BI CACGAG 1 cut(s) 1382
Bst2UI CCWGG 2 cut(s) 798, 868
Bst4CI ACNGT 2 cut(s) 274, 371
Bst6I CTCTTC 1 cut(s) 525
BstAUI TGTACA 1 cut(s) 738
BstBI TTCGAA 1 cut(s) 288
BstC8I GCNNGC 4 cut(s) 8, 463, 663, 1311
BstDEI CTNAG 4 cut(s) 908, 1277, 1304, 1340
BstDSI CCRYGG 1 cut(s) 65
BstF5I GGATG 2 cut(s) 1079, 1142
BstFNI CGCG 1 cut(s) 314
BstHHI GCGC 1 cut(s) 1260
BstKTI GATC 7 cut(s) 312, 322, 358, 561, 1121, 1204, 1381
BstMAI GTCTC 2 cut(s) 142, 717
BstMBI GATC 7 cut(s) 309, 319, 355, 558, 1118, 1201, 1378
BstMWI GCNNNNNNNGC 4 cut(s) 455, 686, 1168, 1358
BstNI CCWGG 2 cut(s) 798, 868
BstSCI CCNGG 2 cut(s) 796, 866
BstSFI CTRYAG 2 cut(s) 456, 1365
BstSLI GKGCMC 4 cut(s) 285, 483, 612, 1104
BstUI CGCG 1 cut(s) 314
BstV1I GCAGC 6 cut(s) 376, 470, 1004, 1231, 1348, 1351
BstV2I GAAGAC 1 cut(s) 1272
BstX2I RGATCY 1 cut(s) 1118
BstXI CCANNNNNNTGG 3 cut(s) 115, 555, 874
BstYI RGATCY 1 cut(s) 1118
BsuRI GGCC 3 cut(s) 81, 119, 481
BtgI CCRYGG 1 cut(s) 65
BtsCI GGATG 2 cut(s) 1079, 1142
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 4 cut(s) 472, 768, 879, 1301
Cac8I GCNNGC 4 cut(s) 8, 463, 663, 1311
CciI TCATGA 1 cut(s) 925
CfoI GCGC 1 cut(s) 1260
Cfr13I GGNCC 2 cut(s) 479, 480
Csp6I GTAC 4 cut(s) 377, 636, 702, 739
CviAII CATG 4 cut(s) 51, 134, 926, 938
CviQI GTAC 4 cut(s) 377, 636, 702, 739
DdeI CTNAG 4 cut(s) 908, 1277, 1304, 1340
DpnI GATC 7 cut(s) 311, 321, 357, 560, 1120, 1203, 1380
DpnII GATC 7 cut(s) 309, 319, 355, 558, 1118, 1201, 1378
EaeI YGGCCR 2 cut(s) 79, 117
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
Eco130I CCWWGG 4 cut(s) 114, 483, 613, 666
Eco24I GRGCYC 2 cut(s) 483, 827
Eco57I CTGAAG 1 cut(s) 276
EcoO109I RGGNCCY 1 cut(s) 480
EcoRII CCWGG 2 cut(s) 796, 866
EcoT14I CCWWGG 4 cut(s) 114, 483, 613, 666
EcoT38I GRGCYC 2 cut(s) 483, 827
ErhI CCWWGG 4 cut(s) 114, 483, 613, 666
FaeI CATG 4 cut(s) 54, 137, 929, 941
FalI AAGNNNNNCTT 2 cut(s) 673, 705
FaqI GGGAC 1 cut(s) 200
FatI CATG 4 cut(s) 50, 133, 925, 937
FauNDI CATATG 1 cut(s) 84
FbaI TGATCA 1 cut(s) 1201
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 6 cut(s) 390, 459, 993, 1245, 1362, 1365
FokI GGATG 2 cut(s) 1086, 1149
FriOI GRGCYC 2 cut(s) 483, 827
Fsp4HI GCNGC 6 cut(s) 390, 459, 993, 1245, 1362, 1365
FspBI CTAG 4 cut(s) 212, 434, 462, 1310
GlaI GCGC 1 cut(s) 1259
GluI GCNGC 6 cut(s) 390, 459, 993, 1245, 1362, 1365
GsuI CTGGAG 2 cut(s) 311, 965
HaeIII GGCC 3 cut(s) 81, 119, 481
HapII CCGG 2 cut(s) 498, 788
HhaI GCGC 1 cut(s) 1260
Hin1II CATG 4 cut(s) 54, 137, 929, 941
Hin6I GCGC 1 cut(s) 1258
HinP1I GCGC 1 cut(s) 1258
HincII GTYRAC 1 cut(s) 1039
HindII GTYRAC 1 cut(s) 1039
HindIII AAGCTT 2 cut(s) 535, 687
HinfI GANTC 2 cut(s) 766, 975
HpaII CCGG 2 cut(s) 498, 788
HphI GGTGA 2 cut(s) 177, 519
Hpy166II GTNNAC 5 cut(s) 406, 439, 505, 739, 1039
Hpy188I TCNGA 3 cut(s) 955, 980, 1051
Hpy188III TCNNGA 5 cut(s) 328, 788, 926, 1134, 1382
Hpy8I GTNNAC 5 cut(s) 406, 439, 505, 739, 1039
Hpy99I CGWCG 1 cut(s) 1442
HpyAV CCTTC 7 cut(s) 103, 251, 295, 579, 713, 1228, 1322
HpyCH4III ACNGT 2 cut(s) 274, 371
HpyCH4IV ACGT 1 cut(s) 1437
HpyCH4V TGCA 8 cut(s) 196, 353, 458, 992, 1162, 1217, 1367, 1390
HpyF10VI GCNNNNNNNGC 4 cut(s) 455, 686, 1168, 1358
HpyF3I CTNAG 4 cut(s) 908, 1277, 1304, 1340
HpySE526I ACGT 1 cut(s) 1437
Hsp92II CATG 4 cut(s) 54, 137, 929, 941
HspAI GCGC 1 cut(s) 1258
Kpn2I TCCGGA 1 cut(s) 787
Ksp22I TGATCA 1 cut(s) 1201
Kzo9I GATC 7 cut(s) 309, 319, 355, 558, 1118, 1201, 1378
LguI GCTCTTC 1 cut(s) 525
LmnI GCTCC 4 cut(s) 67, 177, 260, 946
Lsp1109I GCAGC 6 cut(s) 376, 470, 1004, 1231, 1348, 1351
LweI GCATC 1 cut(s) 78
MaeI CTAG 4 cut(s) 212, 434, 462, 1310
MaeII ACGT 1 cut(s) 1437
MaeIII GTNAC 1 cut(s) 525
MalI GATC 7 cut(s) 311, 321, 357, 560, 1120, 1203, 1380
MboI GATC 7 cut(s) 309, 319, 355, 558, 1118, 1201, 1378
MboII GAAGA 4 cut(s) 314, 512, 1277, 1334
MflI RGATCY 1 cut(s) 1118
MhlI GDGCHC 6 cut(s) 285, 483, 612, 827, 1104, 1338
MlsI TGGCCA 2 cut(s) 81, 119
MluCI AATT 7 cut(s) 344, 600, 696, 747, 956, 1092, 1163
MluNI TGGCCA 2 cut(s) 81, 119
MlyI GAGTC 1 cut(s) 984
MnlI CCTC 7 cut(s) 240, 259, 795, 1092, 1299, 1347, 1440
Mox20I TGGCCA 2 cut(s) 81, 119
MroI TCCGGA 1 cut(s) 787
MroXI GAANNNNTTC 1 cut(s) 921
MscI TGGCCA 2 cut(s) 81, 119
MslI CAYNNNNRTG 2 cut(s) 553, 776
Msp20I TGGCCA 2 cut(s) 81, 119
MspI CCGG 2 cut(s) 498, 788
MspR9I CCNGG 2 cut(s) 798, 868
Mva1269I GAATGC 2 cut(s) 581, 1219
MvaI CCWGG 2 cut(s) 798, 868
MvnI CGCG 1 cut(s) 314
MwoI GCNNNNNNNGC 4 cut(s) 455, 686, 1168, 1358
NdeI CATATG 1 cut(s) 84
NdeII GATC 7 cut(s) 309, 319, 355, 558, 1118, 1201, 1378
NheI GCTAGC 2 cut(s) 461, 1309
NlaIII CATG 4 cut(s) 54, 137, 929, 941
NlaIV GGNNCC 5 cut(s) 173, 262, 481, 1080, 1103
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 525
NspV TTCGAA 1 cut(s) 288
PagI TCATGA 1 cut(s) 925
PciSI GCTCTTC 1 cut(s) 525
PctI GAATGC 2 cut(s) 581, 1219
PdmI GAANNNNTTC 1 cut(s) 921
PfeI GAWTC 1 cut(s) 766
PflMI CCANNNNNTGG 1 cut(s) 1112
PkrI GCNGC 6 cut(s) 391, 460, 994, 1246, 1363, 1366
PleI GAGTC 1 cut(s) 983
PpsI GAGTC 1 cut(s) 983
Psp6I CCWGG 2 cut(s) 796, 866
PspGI CCWGG 2 cut(s) 796, 866
PspN4I GGNNCC 5 cut(s) 173, 262, 481, 1080, 1103
PspOMI GGGCCC 1 cut(s) 479
PspPI GGNCC 2 cut(s) 479, 480
PsrI GAACNNNNNNTAC 2 cut(s) 497, 529
PstI CTGCAG 2 cut(s) 460, 1369
PsuI RGATCY 1 cut(s) 1118
RsaI GTAC 4 cut(s) 378, 637, 703, 740
RsaNI GTAC 4 cut(s) 377, 636, 702, 739
RseI CAYNNNNRTG 2 cut(s) 553, 776
SapI GCTCTTC 1 cut(s) 525
SatI GCNGC 6 cut(s) 390, 459, 993, 1245, 1362, 1365
Sau3AI GATC 7 cut(s) 309, 319, 355, 558, 1118, 1201, 1378
Sau96I GGNCC 2 cut(s) 479, 480
ScaI AGTACT 1 cut(s) 637
SchI GAGTC 1 cut(s) 984
ScrFI CCNGG 2 cut(s) 798, 868
SduI GDGCHC 6 cut(s) 285, 483, 612, 827, 1104, 1338
SfaNI GCATC 1 cut(s) 78
SfcI CTRYAG 2 cut(s) 456, 1365
SfuI TTCGAA 1 cut(s) 288
SmiMI CAYNNNNRTG 2 cut(s) 553, 776
SpeI ACTAGT 1 cut(s) 433
Sse9I AATT 7 cut(s) 344, 600, 696, 747, 956, 1092, 1163
SspMI CTAG 4 cut(s) 212, 434, 462, 1310
StyD4I CCNGG 2 cut(s) 796, 866
StyI CCWWGG 4 cut(s) 114, 483, 613, 666
TaaI ACNGT 2 cut(s) 274, 371
TaiI ACGT 1 cut(s) 1440
TaqI TCGA 1 cut(s) 288
TasI AATT 7 cut(s) 344, 600, 696, 747, 956, 1092, 1163
TatI WGTACW 2 cut(s) 635, 738
TfiI GAWTC 1 cut(s) 766
TscAI CASTG 4 cut(s) 472, 768, 879, 1308
TseFI GTSAC 1 cut(s) 525
TseI GCWGC 6 cut(s) 389, 458, 992, 1244, 1361, 1364
Tsp45I GTSAC 1 cut(s) 525
TspDTI ATGAA 9 cut(s) 39, 122, 193, 337, 609, 914, 1020, 1302, 1341
TspGWI ACGGA 3 cut(s) 54, 513, 830
TspRI CASTG 4 cut(s) 472, 768, 879, 1308
Van91I CCANNNNNTGG 1 cut(s) 1112
XapI RAATTY 1 cut(s) 1092
XmiI GTMKAC 1 cut(s) 438
XmnI GAANNNNTTC 1 cut(s) 921
XspI CTAG 4 cut(s) 212, 434, 462, 1310
ZrmI AGTACT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.