Rh1DG263200

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000733
Physical Location & Seq
Reverse (-)
48058869 .. 48060994
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG263200.1

Sequence Viewer

Length: 1419 bp
ATGGCAAAAGAGCTTCATGTTGTAATGCTCCCATGGTCTGCCTTTGGCCATATGATGCCCTTCTTTCAACTCTCCATAGCCTTGGCCAAAGCCAAAGTTCATGTCTCCTACATAGCCACCCCAAGAAACATTCAAAGGCTCCCCAAAATCTTGCCTGATTTACAACCTTTCATACACCTAGTCCCCATTTCATTTCCTCCTTTGGAACCTGACTTCTTGCCTGAAGGAGCCGAGGCCACTGTCGATGTGCCCTTCGAAAAAATCGACAATTTACAGATCGCGTATGATCTTCTCCAGAAACCCATCAAGCAATTCATTGCAGATCAAATGCCTGACTGTATAGTACCCGATTTCGCTGCTTATTGGGTGGTGGACATTGCCAAAGAGTATGGTGTTCCACTAGTCTACTTCTCTGCTTTCTCTGCAGCTAGCAGTGTATTCTTTGGGCCCCTGGAAAATCTCTCCGGTGTGAACAGAAACTACGCTCTTCCGTCACCCCAAAGCTTGACATCTCCACCAGAATGGATCACTTTTCCTTCTTTGGTGGCATTCAAGGAGTACGAAGCAATTTATGTGCCTCAAGGGTTTTGGGGTAAAAATAGTACTGGGATTAGTGGTGCTTCAAGGCTTGCCAAGGTTATATCAGCAAGTCAAGCTTTGGCAATTCGTACCTGTAATGAGATTGAAGGAGACTACTTGGAAGTGTACAAGAAAATTACTGGAAAGCCAGTGATTCCCATTGGTGTGCTTCCTCCGGAGAAACCTGGGAAAAGGGAAAATACGGAAATGAGCCCTGATGGGTTTATGTTTGATTGGCTCTATAAACAAAGCCCCAGGTCAGTGGTGTTTGTGGGATTTGGGAGTGAGTGTAAGCTGAGCAAAGAACAAGTTCATAAGATAGCTCATGGGCTGGAGCTATCAGAATTGCCATTTGTTTGGGGAGTCAGAAAACCCAATGCAGCTAACGATGATGAAGTTGATGATTTTCTCCCTTTAGGTTTTGTTGACAGAACATCAGAGAAAGGGCTTGTTTGCTTTGGATGGGTGCCTCAAATGGAAATTTTGGGGCACCCATCAGTTGGGGGATCTTTGTTTCACTCTGGATGGGGTTCTGTGATTGAAACTCTGCAATTTGGGCATTGCCTTGTGTTGTTGCCCATCATTGTTGATCAGCCTTTGAATGCAAGGCTTTTGGTGGAGAAGGGTCTGGCCGCCGAAGTAAAGCGCAACGAAGACGGGTCGCTTAGTAGAGATGAAATAGCAAAAACACTGAGGCTAGCAATGGTGGAAGATGAAGGAGAGCACCTGAGAAGCAATGCGAGGAAAGCTGCTGCAGTTTTTGGAGATCACAAGTTGCACCAAGACCACTACATTGGTGCGTTTGTTGATTATCTTAAAAATAACGTCGCAAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

472

Amino Acids

52.44

Weight (kDa)

5.76

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 272 - 424 3.9e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1045, 1068
AccB7I CCANNNNNTGG 1 cut(s) 1079
AccI GTMKAC 1 cut(s) 405
AccII CGCG 1 cut(s) 281
AccIII TCCGGA 1 cut(s) 754
AciI CCGC 1 cut(s) 1212
AclWI GGATC 2 cut(s) 533, 1093
AcoI YGGCCR 3 cut(s) 46, 84, 1209
AcsI RAATTY 1 cut(s) 1059
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 5 cut(s) 345, 560, 604, 670, 707
AfiI CCNNNNNNNGG 1 cut(s) 1079
AgsI TTSAA 7 cut(s) 68, 134, 553, 624, 686, 1121, 1180
AhlI ACTAGT 1 cut(s) 400
AjnI CCWGG 3 cut(s) 450, 763, 833
AluBI AGCT 9 cut(s) 13, 428, 504, 656, 874, 902, 916, 962, 1328
AluI AGCT 9 cut(s) 13, 428, 504, 656, 874, 902, 916, 962, 1328
Alw21I GWGCWC 1 cut(s) 1305
Alw26I GTCTC 2 cut(s) 109, 684
AlwI GGATC 2 cut(s) 533, 1093
Aor13HI TCCGGA 1 cut(s) 754
AoxI GGCC 5 cut(s) 46, 84, 234, 446, 1209
ApaI GGGCCC 1 cut(s) 450
ApeKI GCWGC 5 cut(s) 356, 425, 959, 1328, 1331
ApoI RAATTY 1 cut(s) 1059
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
Asp700I GAANNNNTTC 1 cut(s) 888
AspLEI GCGC 1 cut(s) 1227
AspS9I GGNCC 2 cut(s) 446, 447
AsuHPI GGTGA 1 cut(s) 486
AsuII TTCGAA 1 cut(s) 255
AsuNHI GCTAGC 2 cut(s) 428, 1276
BaeGI GKGCMC 3 cut(s) 252, 450, 1071
BalI TGGCCA 2 cut(s) 48, 86
BanI GGYRCC 2 cut(s) 1045, 1068
BanII GRGCYC 2 cut(s) 450, 794
BbsI GAAGAC 1 cut(s) 1239
Bbv12I GWGCWC 1 cut(s) 1305
BbvI GCAGC 5 cut(s) 343, 437, 971, 1315, 1318
BccI CCATC 6 cut(s) 311, 791, 1035, 1081, 1098, 1166
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 3 cut(s) 452, 765, 835
BclI TGATCA 1 cut(s) 1168
BcoDI GTCTC 2 cut(s) 109, 684
BcuI ACTAGT 1 cut(s) 400
BfaI CTAG 4 cut(s) 179, 401, 429, 1277
BfmI CTRYAG 2 cut(s) 423, 1332
BisI GCNGC 6 cut(s) 357, 426, 960, 1212, 1329, 1332
BlpI GCTNAGC 1 cut(s) 875
BlsI GCNGC 6 cut(s) 358, 427, 961, 1213, 1330, 1333
BmcAI AGTACT 1 cut(s) 604
Bme1390I CCNGG 3 cut(s) 452, 765, 835
BmgT120I GGNCC 2 cut(s) 446, 447
BmiI GGNNCC 7 cut(s) 140, 207, 229, 448, 449, 1047, 1070
BmrFI CCNGG 3 cut(s) 452, 765, 835
BmrI ACTGGG 1 cut(s) 615
BmsI GCATC 1 cut(s) 45
BmtI GCTAGC 2 cut(s) 432, 1280
BmuI ACTGGG 1 cut(s) 615
BpiI GAAGAC 1 cut(s) 1239
BpmI CTGGAG 2 cut(s) 278, 932
Bpu1102I GCTNAGC 1 cut(s) 875
Bpu14I TTCGAA 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 564
BsaJI CCNNGG 7 cut(s) 32, 81, 231, 450, 633, 764, 833
BsaWI WCCGGW 2 cut(s) 464, 754
BsaXI ACNNNNNCTCC 2 cut(s) 853, 883
Bsc4I CCNNNNNNNGG 1 cut(s) 1079
Bse1I ACTGG 3 cut(s) 610, 724, 728
Bse3DI GCAATG 5 cut(s) 315, 375, 1138, 1287, 1321
BseAI TCCGGA 1 cut(s) 754
BseBI CCWGG 3 cut(s) 452, 765, 835
BseDI CCNNGG 7 cut(s) 32, 81, 231, 450, 633, 764, 833
BseGI GGATG 2 cut(s) 1046, 1109
BseLI CCNNNNNNNGG 1 cut(s) 1079
BseMI GCAATG 5 cut(s) 315, 375, 1138, 1287, 1321
BseMII CTCAG 3 cut(s) 866, 1262, 1298
BseNI ACTGG 3 cut(s) 610, 724, 728
BseSI GKGCMC 3 cut(s) 252, 450, 1071
BseXI GCAGC 5 cut(s) 343, 437, 971, 1315, 1318
Bsh1236I CGCG 1 cut(s) 281
BshFI GGCC 5 cut(s) 48, 86, 236, 448, 1211
BshNI GGYRCC 2 cut(s) 1045, 1068
BsiHKAI GWGCWC 1 cut(s) 1305
BsiSI CCGG 2 cut(s) 465, 755
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 1079
BsmAI GTCTC 2 cut(s) 109, 684
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 2 cut(s) 548, 1186
BsnI GGCC 5 cut(s) 48, 86, 236, 448, 1211
Bsp119I TTCGAA 1 cut(s) 255
Bsp120I GGGCCC 1 cut(s) 446
Bsp1286I GDGCHC 5 cut(s) 252, 450, 794, 1071, 1305
Bsp13I TCCGGA 1 cut(s) 754
Bsp1407I TGTACA 1 cut(s) 705
Bsp143I GATC 7 cut(s) 276, 286, 322, 525, 1085, 1168, 1345
Bsp1720I GCTNAGC 1 cut(s) 875
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 1 cut(s) 1212
BspANI GGCC 5 cut(s) 48, 86, 236, 448, 1211
BspCNI CTCAG 3 cut(s) 867, 1263, 1299
BspEI TCCGGA 1 cut(s) 754
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 7 cut(s) 140, 207, 229, 448, 449, 1047, 1070
BspMAI CTGCAG 2 cut(s) 427, 1336
BspOI GCTAGC 2 cut(s) 432, 1280
BspPI GGATC 2 cut(s) 533, 1093
BspQI GCTCTTC 1 cut(s) 492
BspT104I TTCGAA 1 cut(s) 255
BspT107I GGYRCC 2 cut(s) 1045, 1068
BsrDI GCAATG 5 cut(s) 315, 375, 1138, 1287, 1321
BsrGI TGTACA 1 cut(s) 705
BsrI ACTGG 3 cut(s) 610, 724, 728
BssECI CCNNGG 7 cut(s) 32, 81, 231, 450, 633, 764, 833
BssMI GATC 7 cut(s) 276, 286, 322, 525, 1085, 1168, 1345
BssT1I CCWWGG 3 cut(s) 32, 81, 633
Bst2UI CCWGG 3 cut(s) 452, 765, 835
Bst4CI ACNGT 2 cut(s) 241, 338
Bst6I CTCTTC 1 cut(s) 492
BstAUI TGTACA 1 cut(s) 705
BstBI TTCGAA 1 cut(s) 255
BstC8I GCNNGC 3 cut(s) 430, 630, 1278
BstDEI CTNAG 4 cut(s) 875, 1244, 1271, 1307
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 1046, 1109
BstFNI CGCG 1 cut(s) 281
BstHHI GCGC 1 cut(s) 1227
BstKTI GATC 7 cut(s) 279, 289, 325, 528, 1088, 1171, 1348
BstMAI GTCTC 2 cut(s) 109, 684
BstMBI GATC 7 cut(s) 276, 286, 322, 525, 1085, 1168, 1345
BstMWI GCNNNNNNNGC 4 cut(s) 422, 653, 1135, 1325
BstNI CCWGG 3 cut(s) 452, 765, 835
BstSCI CCNGG 3 cut(s) 450, 763, 833
BstSFI CTRYAG 2 cut(s) 423, 1332
BstSLI GKGCMC 3 cut(s) 252, 450, 1071
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 5 cut(s) 343, 437, 971, 1315, 1318
BstV2I GAAGAC 1 cut(s) 1239
BstX2I RGATCY 1 cut(s) 1085
BstXI CCANNNNNNTGG 5 cut(s) 82, 522, 841, 936, 1373
BstYI RGATCY 1 cut(s) 1085
BsuRI GGCC 5 cut(s) 48, 86, 236, 448, 1211
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 2 cut(s) 1046, 1109
BtsI GCAGTG 1 cut(s) 439
BtsIMutI CAGTG 5 cut(s) 237, 439, 735, 846, 1268
Cac8I GCNNGC 3 cut(s) 430, 630, 1278
CfoI GCGC 1 cut(s) 1227
Cfr13I GGNCC 2 cut(s) 446, 447
Csp6I GTAC 5 cut(s) 344, 559, 603, 669, 706
CviAII CATG 4 cut(s) 17, 33, 101, 905
CviQI GTAC 5 cut(s) 344, 559, 603, 669, 706
DdeI CTNAG 4 cut(s) 875, 1244, 1271, 1307
DpnI GATC 7 cut(s) 278, 288, 324, 527, 1087, 1170, 1347
DpnII GATC 7 cut(s) 276, 286, 322, 525, 1085, 1168, 1345
EaeI YGGCCR 3 cut(s) 46, 84, 1209
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Eco130I CCWWGG 3 cut(s) 32, 81, 633
Eco24I GRGCYC 2 cut(s) 450, 794
Eco57I CTGAAG 1 cut(s) 243
EcoO109I RGGNCCY 1 cut(s) 447
EcoRII CCWGG 3 cut(s) 450, 763, 833
EcoT14I CCWWGG 3 cut(s) 32, 81, 633
EcoT38I GRGCYC 2 cut(s) 450, 794
ErhI CCWWGG 3 cut(s) 32, 81, 633
FaeI CATG 4 cut(s) 20, 36, 104, 908
FalI AAGNNNNNCTT 2 cut(s) 640, 672
FaqI GGGAC 1 cut(s) 167
FatI CATG 4 cut(s) 16, 32, 100, 904
FauNDI CATATG 1 cut(s) 51
FbaI TGATCA 1 cut(s) 1168
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 6 cut(s) 357, 426, 960, 1212, 1329, 1332
FokI GGATG 2 cut(s) 1053, 1116
FriOI GRGCYC 2 cut(s) 450, 794
Fsp4HI GCNGC 6 cut(s) 357, 426, 960, 1212, 1329, 1332
FspBI CTAG 4 cut(s) 179, 401, 429, 1277
GlaI GCGC 1 cut(s) 1226
GluI GCNGC 6 cut(s) 357, 426, 960, 1212, 1329, 1332
GsuI CTGGAG 2 cut(s) 278, 932
HaeIII GGCC 5 cut(s) 48, 86, 236, 448, 1211
HapII CCGG 2 cut(s) 465, 755
HhaI GCGC 1 cut(s) 1227
Hin1II CATG 4 cut(s) 20, 36, 104, 908
Hin6I GCGC 1 cut(s) 1225
HinP1I GCGC 1 cut(s) 1225
HincII GTYRAC 1 cut(s) 1006
HindII GTYRAC 1 cut(s) 1006
HindIII AAGCTT 2 cut(s) 502, 654
HinfI GANTC 2 cut(s) 733, 942
HpaII CCGG 2 cut(s) 465, 755
HphI GGTGA 1 cut(s) 486
Hpy166II GTNNAC 5 cut(s) 373, 406, 472, 706, 1006
Hpy188I TCNGA 3 cut(s) 922, 947, 1018
Hpy188III TCNNGA 3 cut(s) 295, 755, 1101
Hpy8I GTNNAC 5 cut(s) 373, 406, 472, 706, 1006
Hpy99I CGWCG 1 cut(s) 1409
HpyAV CCTTC 7 cut(s) 70, 218, 262, 546, 680, 1195, 1289
HpyCH4III ACNGT 2 cut(s) 241, 338
HpyCH4IV ACGT 1 cut(s) 1404
HpyCH4V TGCA 7 cut(s) 320, 425, 959, 1129, 1184, 1334, 1357
HpyF10VI GCNNNNNNNGC 4 cut(s) 422, 653, 1135, 1325
HpyF3I CTNAG 4 cut(s) 875, 1244, 1271, 1307
HpySE526I ACGT 1 cut(s) 1404
Hsp92II CATG 4 cut(s) 20, 36, 104, 908
HspAI GCGC 1 cut(s) 1225
Kpn2I TCCGGA 1 cut(s) 754
Ksp22I TGATCA 1 cut(s) 1168
Kzo9I GATC 7 cut(s) 276, 286, 322, 525, 1085, 1168, 1345
LguI GCTCTTC 1 cut(s) 492
LmnI GCTCC 4 cut(s) 33, 144, 227, 913
Lsp1109I GCAGC 5 cut(s) 343, 437, 971, 1315, 1318
LweI GCATC 1 cut(s) 45
MaeI CTAG 4 cut(s) 179, 401, 429, 1277
MaeII ACGT 1 cut(s) 1404
MaeIII GTNAC 1 cut(s) 492
MalI GATC 7 cut(s) 278, 288, 324, 527, 1087, 1170, 1347
MboI GATC 7 cut(s) 276, 286, 322, 525, 1085, 1168, 1345
MboII GAAGA 4 cut(s) 281, 479, 1244, 1301
MflI RGATCY 1 cut(s) 1085
MhlI GDGCHC 5 cut(s) 252, 450, 794, 1071, 1305
MlsI TGGCCA 2 cut(s) 48, 86
MluCI AATT 8 cut(s) 268, 311, 567, 663, 714, 923, 1059, 1130
MluNI TGGCCA 2 cut(s) 48, 86
MlyI GAGTC 1 cut(s) 951
MnlI CCTC 8 cut(s) 207, 226, 588, 762, 1059, 1266, 1314, 1407
Mox20I TGGCCA 2 cut(s) 48, 86
MroI TCCGGA 1 cut(s) 754
MroXI GAANNNNTTC 1 cut(s) 888
MscI TGGCCA 2 cut(s) 48, 86
MseI TTAA 1 cut(s) 1395
MslI CAYNNNNRTG 2 cut(s) 520, 743
Msp20I TGGCCA 2 cut(s) 48, 86
MspI CCGG 2 cut(s) 465, 755
MspR9I CCNGG 3 cut(s) 452, 765, 835
Mva1269I GAATGC 2 cut(s) 548, 1186
MvaI CCWGG 3 cut(s) 452, 765, 835
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 4 cut(s) 422, 653, 1135, 1325
NcoI CCATGG 1 cut(s) 32
NdeI CATATG 1 cut(s) 51
NdeII GATC 7 cut(s) 276, 286, 322, 525, 1085, 1168, 1345
NheI GCTAGC 2 cut(s) 428, 1276
NlaIII CATG 4 cut(s) 20, 36, 104, 908
NlaIV GGNNCC 7 cut(s) 140, 207, 229, 448, 449, 1047, 1070
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 492
NspV TTCGAA 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 492
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PctI GAATGC 2 cut(s) 548, 1186
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 1 cut(s) 733
PflMI CCANNNNNTGG 1 cut(s) 1079
PkrI GCNGC 6 cut(s) 358, 427, 961, 1213, 1330, 1333
PleI GAGTC 1 cut(s) 950
PpsI GAGTC 1 cut(s) 950
Psp6I CCWGG 3 cut(s) 450, 763, 833
PspGI CCWGG 3 cut(s) 450, 763, 833
PspN4I GGNNCC 7 cut(s) 140, 207, 229, 448, 449, 1047, 1070
PspOMI GGGCCC 1 cut(s) 446
PspPI GGNCC 2 cut(s) 446, 447
PsrI GAACNNNNNNTAC 2 cut(s) 464, 496
PstI CTGCAG 2 cut(s) 427, 1336
PsuI RGATCY 1 cut(s) 1085
RsaI GTAC 5 cut(s) 345, 560, 604, 670, 707
RsaNI GTAC 5 cut(s) 344, 559, 603, 669, 706
RseI CAYNNNNRTG 2 cut(s) 520, 743
SapI GCTCTTC 1 cut(s) 492
SaqAI TTAA 1 cut(s) 1395
SatI GCNGC 6 cut(s) 357, 426, 960, 1212, 1329, 1332
Sau3AI GATC 7 cut(s) 276, 286, 322, 525, 1085, 1168, 1345
Sau96I GGNCC 2 cut(s) 446, 447
ScaI AGTACT 1 cut(s) 604
SchI GAGTC 1 cut(s) 951
ScrFI CCNGG 3 cut(s) 452, 765, 835
SduI GDGCHC 5 cut(s) 252, 450, 794, 1071, 1305
SfaNI GCATC 1 cut(s) 45
SfcI CTRYAG 2 cut(s) 423, 1332
SfuI TTCGAA 1 cut(s) 255
SmiMI CAYNNNNRTG 2 cut(s) 520, 743
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
SpeI ACTAGT 1 cut(s) 400
Sse9I AATT 8 cut(s) 268, 311, 567, 663, 714, 923, 1059, 1130
SsiI CCGC 1 cut(s) 1212
SspMI CTAG 4 cut(s) 179, 401, 429, 1277
StyD4I CCNGG 3 cut(s) 450, 763, 833
StyI CCWWGG 3 cut(s) 32, 81, 633
TaaI ACNGT 2 cut(s) 241, 338
TaiI ACGT 1 cut(s) 1407
TaqI TCGA 3 cut(s) 243, 255, 264
TasI AATT 8 cut(s) 268, 311, 567, 663, 714, 923, 1059, 1130
TatI WGTACW 2 cut(s) 602, 705
TauI GCSGC 1 cut(s) 1214
TfiI GAWTC 1 cut(s) 733
Tru1I TTAA 1 cut(s) 1395
Tru9I TTAA 1 cut(s) 1395
TscAI CASTG 5 cut(s) 244, 439, 735, 846, 1275
TseFI GTSAC 1 cut(s) 492
TseI GCWGC 5 cut(s) 356, 425, 959, 1328, 1331
Tsp45I GTSAC 1 cut(s) 492
TspDTI ATGAA 9 cut(s) 5, 89, 160, 180, 304, 881, 987, 1269, 1308
TspGWI ACGGA 2 cut(s) 480, 797
TspRI CASTG 5 cut(s) 244, 439, 735, 846, 1275
Van91I CCANNNNNTGG 1 cut(s) 1079
XapI RAATTY 1 cut(s) 1059
XmiI GTMKAC 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 4 cut(s) 179, 401, 429, 1277
ZrmI AGTACT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.