Rw1G023640

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000733
Physical Location & Seq
Forward (+)
49591134 .. 49592546
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G023640.1

Sequence Viewer

Length: 1413 bp
ATGGCAAAAGAGCTTCATATTGTGATTCTTCCATGGTCTGCCTTTGGCCATATCATCCCTTTGATTCAACTCTCCATAGCCTTAGCAAAAGCCAAGATTCATGTCTCCTTCATATCTACCCCCAAAAACATCCAAAGGCTCCCCAAAATCCCACCTGAGTTGCAATCTCTCATAACAATAGTGTCTTTTCCTTTTCCAACTTTGGATGCTGATCGGGTGTTGCCTGAAGGGGCCGAGGCTACGGTGGACATACCTTTCGAGAAAATGGACGACTTGAAGTTTGCATTTGATCTTCTACGACAACCCTTTAAGCAGTTCATTGCTGATCAAGTGCCGGATTGGATCATCACCGATTTTGCCGCCCACTGGGCGGTTGACGTTGCCAAAGAGTATGGTGTTCCTGTTGCCTACTTCTCTCCTTTCTCTGCTGCTAAGAATGTCTTCTGTGGTTCACCGGAATATCTCTCTCATGTTCCACCATCACCGGAAGTATTCACCTCCCCACCGGAGTGGGTTCCTTTTCCGTCTTTGGTAGCACTCAATGAGTTTGAGGCAGTTCGTTGGCATGCTGGTGTTTATAATGTGAATCGTTCTGGGATAAGTGATGCTGCAAGGCTGGCCAAGATTGTATCAGGAAGTCAAGTACTAGCTGTTCGTAGTTGCAATGAAATTGAAGGAGAGTACTTGGGTTTGTACGCGACACTAACCGGAAAACCTGTGATTCCCACAGGTTTGCTGCCTCCAAAGAAATCAAAAAGGGAGTCGGGGAATGCTGTGATCTTTGAGTGGCTTGATAAGCAGAAACCCGGGTCAGTTGTGTTTGTAGGGTTTGGGAGTGAGTGTAAGCTGAGCAAAGAACAAGTGTATGAGATAGCTCATGGTCTGGAGCTTTCAGAGTTGCCATTTCTCTGGGCACTCAGAAAACCCAGTTGGGCTAGTACTGACGCTGATGCTCTACCTCTAGGTTTTGTGGACAGAACATCAAAGAAGGGCCTTGTTTGCTTGGGATGGGTGCCCCAAATAGAAATTCTGGGGCACCCATCAGTCGGGGGTTCTCTGTTTCACTCTGGATGGGGTTCTGTGATTGAGACTCTGCAATTTGGGCATTGCCTTGTTGTGTTACCCTTAATTATTGATCAACCTCTGAATGCAAGGCTTCTGGTAGAGAAAGGTCTGGCTGCCGAAGTGAAACGCAACGAAGATGGGTCGTTTACTGCAGACGACATAGCCAAAACACTGAGGCTAGCAATGGTAGAAGAGGACGGAGAGCACCTGAGAATCAATGCAAGGAAAGCTGCTGCTGTTTTTGGAGATGAGAAGCTGCACCAAGACCACTATCTTGGTGCATTTGTTGATTATCTCAAGAATAATGGTAGAAAAGGTCTTCTAGACAAGAATGATGACCCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

470

Amino Acids

51.78

Weight (kDa)

5.76

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 272 - 415 2.2e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 579
AccB1I GGYRCC 2 cut(s) 1012, 1035
AccII CGCG 1 cut(s) 698
AciI CCGC 2 cut(s) 360, 371
AclWI GGATC 1 cut(s) 350
AcoI YGGCCR 2 cut(s) 46, 618
AcsI RAATTY 1 cut(s) 1026
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 4 cut(s) 645, 683, 695, 940
AfiI CCNNNNNNNGG 3 cut(s) 366, 370, 1046
AgsI TTSAA 3 cut(s) 68, 277, 674
AjuI GAANNNNNNNTTGG 4 cut(s) 913, 945, 1011, 1043
AleI CACNNNNGTG 1 cut(s) 508
AluBI AGCT 7 cut(s) 13, 650, 847, 875, 889, 1295, 1321
AluI AGCT 7 cut(s) 13, 650, 847, 875, 889, 1295, 1321
Alw21I GWGCWC 1 cut(s) 1272
Alw26I GTCTC 2 cut(s) 109, 1082
AlwI GGATC 1 cut(s) 350
Ama87I CYCGRG 1 cut(s) 806
AoxI GGCC 4 cut(s) 46, 231, 618, 991
ApeKI GCWGC 7 cut(s) 428, 608, 736, 1178, 1295, 1298, 1321
ApoI RAATTY 1 cut(s) 1026
ArsI GACNNNNNNTTYG 6 cut(s) 239, 263, 271, 295, 746, 778
Asp700I GAANNNNTTC 1 cut(s) 440
AspS9I GGNCC 2 cut(s) 231, 991
AsuC2I CCSGG 2 cut(s) 807, 808
AsuHPI GGTGA 4 cut(s) 340, 444, 474, 487
AsuNHI GCTAGC 1 cut(s) 1243
AvaI CYCGRG 1 cut(s) 806
BaeGI GKGCMC 3 cut(s) 916, 1017, 1038
BalI TGGCCA 2 cut(s) 48, 620
BanI GGYRCC 2 cut(s) 1012, 1035
BbsI GAAGAC 2 cut(s) 433, 1376
Bbv12I GWGCWC 1 cut(s) 1272
BbvI GCAGC 7 cut(s) 415, 595, 723, 1165, 1282, 1285, 1308
BccI CCATC 5 cut(s) 487, 1002, 1048, 1065, 1196
BclI TGATCA 2 cut(s) 325, 1135
BcnI CCSGG 2 cut(s) 807, 808
BcoDI GTCTC 2 cut(s) 109, 1082
BfaI CTAG 5 cut(s) 647, 936, 962, 1244, 1388
BfmI CTRYAG 1 cut(s) 1215
BglI GCCNNNNNGGC 1 cut(s) 368
BisI GCNGC 8 cut(s) 360, 429, 609, 737, 1179, 1296, 1299, 1322
BlpI GCTNAGC 1 cut(s) 848
BlsI GCNGC 8 cut(s) 361, 430, 610, 738, 1180, 1297, 1300, 1323
BmcAI AGTACT 3 cut(s) 645, 683, 940
Bme1390I CCNGG 2 cut(s) 807, 808
BmeT110I CYCGRG 1 cut(s) 806
BmgT120I GGNCC 2 cut(s) 231, 991
BmiI GGNNCC 5 cut(s) 140, 232, 516, 1014, 1037
BmrFI CCNGG 2 cut(s) 807, 808
BmrI ACTGGG 2 cut(s) 376, 921
BmsI GCATC 3 cut(s) 196, 595, 940
BmtI GCTAGC 1 cut(s) 1247
BmuI ACTGGG 2 cut(s) 376, 921
BpiI GAAGAC 2 cut(s) 433, 1376
BpmI CTGGAG 1 cut(s) 905
Bpu10I CCTNAGC 1 cut(s) 82
Bpu1102I GCTNAGC 1 cut(s) 848
BpuEI CTTGAG 1 cut(s) 1346
BpuMI CCSGG 2 cut(s) 807, 808
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 3 cut(s) 32, 234, 806
BsaWI WCCGGW 4 cut(s) 454, 484, 505, 707
BsaXI ACNNNNNCTCC 2 cut(s) 826, 856
Bsc4I CCNNNNNNNGG 3 cut(s) 366, 370, 1046
Bse1I ACTGG 2 cut(s) 371, 927
Bse3DI GCAATG 4 cut(s) 318, 670, 1105, 1254
Bse8I GATNNNNATC 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 32, 234, 806
BseGI GGATG 5 cut(s) 54, 129, 211, 1013, 1076
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 3 cut(s) 366, 370, 1046
BseMI GCAATG 4 cut(s) 318, 670, 1105, 1254
BseMII CTCAG 5 cut(s) 147, 839, 931, 1229, 1265
BseNI ACTGG 2 cut(s) 371, 927
BseSI GKGCMC 3 cut(s) 916, 1017, 1038
BseXI GCAGC 7 cut(s) 415, 595, 723, 1165, 1282, 1285, 1308
BsgI GTGCAG 1 cut(s) 1307
Bsh1236I CGCG 1 cut(s) 698
BshFI GGCC 4 cut(s) 48, 233, 620, 993
BshNI GGYRCC 2 cut(s) 1012, 1035
BsiHKAI GWGCWC 1 cut(s) 1272
BsiHKCI CYCGRG 1 cut(s) 806
BsiSI CCGG 6 cut(s) 335, 455, 485, 506, 708, 807
BslI CCNNNNNNNGG 3 cut(s) 366, 370, 1046
BsmAI GTCTC 2 cut(s) 109, 1082
BsmI GAATGC 2 cut(s) 775, 1153
BsnI GGCC 4 cut(s) 48, 233, 620, 993
BsoBI CYCGRG 1 cut(s) 806
Bsp1286I GDGCHC 4 cut(s) 916, 1017, 1038, 1272
Bsp143I GATC 6 cut(s) 211, 289, 325, 342, 777, 1135
Bsp1720I GCTNAGC 1 cut(s) 848
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 2 cut(s) 360, 371
BspANI GGCC 4 cut(s) 48, 233, 620, 993
BspCNI CTCAG 5 cut(s) 148, 840, 930, 1230, 1266
BspFNI CGCG 1 cut(s) 698
BspLI GGNNCC 5 cut(s) 140, 232, 516, 1014, 1037
BspMAI CTGCAG 1 cut(s) 1219
BspOI GCTAGC 1 cut(s) 1247
BspPI GGATC 1 cut(s) 350
BspT107I GGYRCC 2 cut(s) 1012, 1035
BsrDI GCAATG 4 cut(s) 318, 670, 1105, 1254
BsrI ACTGG 2 cut(s) 371, 927
BssECI CCNNGG 3 cut(s) 32, 234, 806
BssMI GATC 6 cut(s) 211, 289, 325, 342, 777, 1135
BssT1I CCWWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 1251
BstC8I GCNNGC 3 cut(s) 567, 618, 1245
BstDEI CTNAG 7 cut(s) 82, 156, 432, 848, 917, 1238, 1274
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 5 cut(s) 54, 129, 211, 1013, 1076
BstFNI CGCG 1 cut(s) 698
BstKTI GATC 6 cut(s) 214, 292, 328, 345, 780, 1138
BstMAI GTCTC 2 cut(s) 109, 1082
BstMBI GATC 6 cut(s) 211, 289, 325, 342, 777, 1135
BstMWI GCNNNNNNNGC 6 cut(s) 368, 617, 796, 999, 1102, 1292
BstNSI RCATGY 1 cut(s) 569
BstSCI CCNGG 2 cut(s) 805, 806
BstSFI CTRYAG 1 cut(s) 1215
BstSLI GKGCMC 3 cut(s) 916, 1017, 1038
BstUI CGCG 1 cut(s) 698
BstV1I GCAGC 7 cut(s) 415, 595, 723, 1165, 1282, 1285, 1308
BstV2I GAAGAC 2 cut(s) 433, 1376
BstXI CCANNNNNNTGG 3 cut(s) 510, 909, 1340
BsuRI GGCC 4 cut(s) 48, 233, 620, 993
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 5 cut(s) 54, 129, 211, 1013, 1076
BtsIMutI CAGTG 2 cut(s) 364, 1235
Cac8I GCNNGC 3 cut(s) 567, 618, 1245
Cfr13I GGNCC 2 cut(s) 231, 991
Cfr9I CCCGGG 1 cut(s) 806
CseI GACGC 1 cut(s) 953
Csp6I GTAC 4 cut(s) 644, 682, 694, 939
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 5 cut(s) 33, 101, 470, 566, 878
CviQI GTAC 4 cut(s) 644, 682, 694, 939
DdeI CTNAG 7 cut(s) 82, 156, 432, 848, 917, 1238, 1274
DpnI GATC 6 cut(s) 213, 291, 327, 344, 779, 1137
DpnII GATC 6 cut(s) 211, 289, 325, 342, 777, 1135
EaeI YGGCCR 2 cut(s) 46, 618
Eam1104I CTCTTC 1 cut(s) 1251
EarI CTCTTC 1 cut(s) 1251
Eco130I CCWWGG 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 806
EcoO109I RGGNCCY 1 cut(s) 991
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 5 cut(s) 36, 104, 473, 569, 881
FalI AAGNNNNNCTT 2 cut(s) 425, 457
FatI CATG 5 cut(s) 32, 100, 469, 565, 877
FbaI TGATCA 2 cut(s) 325, 1135
Fnu4HI GCNGC 8 cut(s) 360, 429, 609, 737, 1179, 1296, 1299, 1322
FokI GGATG 5 cut(s) 41, 116, 218, 1020, 1083
Fsp4HI GCNGC 8 cut(s) 360, 429, 609, 737, 1179, 1296, 1299, 1322
FspBI CTAG 5 cut(s) 647, 936, 962, 1244, 1388
GluI GCNGC 8 cut(s) 360, 429, 609, 737, 1179, 1296, 1299, 1322
GsuI CTGGAG 1 cut(s) 905
HaeIII GGCC 4 cut(s) 48, 233, 620, 993
HapII CCGG 6 cut(s) 335, 455, 485, 506, 708, 807
HgaI GACGC 1 cut(s) 953
Hin1II CATG 5 cut(s) 36, 104, 473, 569, 881
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 8 cut(s) 25, 64, 97, 586, 721, 761, 1090, 1278
HpaII CCGG 6 cut(s) 335, 455, 485, 506, 708, 807
HphI GGTGA 4 cut(s) 340, 444, 474, 487
Hpy166II GTNNAC 5 cut(s) 247, 376, 452, 973, 1212
Hpy188I TCNGA 3 cut(s) 895, 920, 1146
Hpy188III TCNNGA 6 cut(s) 259, 633, 884, 1068, 1363, 1388
Hpy8I GTNNAC 5 cut(s) 247, 376, 452, 973, 1212
HpyAV CCTTC 4 cut(s) 118, 221, 668, 982
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 378
HpyF10VI GCNNNNNNNGC 6 cut(s) 368, 617, 796, 999, 1102, 1292
HpyF3I CTNAG 7 cut(s) 82, 156, 432, 848, 917, 1238, 1274
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 5 cut(s) 36, 104, 473, 569, 881
Ksp22I TGATCA 2 cut(s) 325, 1135
Kzo9I GATC 6 cut(s) 211, 289, 325, 342, 777, 1135
LmnI GCTCC 2 cut(s) 144, 886
Lsp1109I GCAGC 7 cut(s) 415, 595, 723, 1165, 1282, 1285, 1308
LweI GCATC 3 cut(s) 196, 595, 940
MaeI CTAG 5 cut(s) 647, 936, 962, 1244, 1388
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 1 cut(s) 1119
MalI GATC 6 cut(s) 213, 291, 327, 344, 779, 1137
MboI GATC 6 cut(s) 211, 289, 325, 342, 777, 1135
MboII GAAGA 6 cut(s) 20, 284, 433, 1211, 1268, 1376
MhlI GDGCHC 4 cut(s) 916, 1017, 1038, 1272
MlsI TGGCCA 2 cut(s) 48, 620
MluCI AATT 4 cut(s) 669, 1026, 1097, 1128
MluNI TGGCCA 2 cut(s) 48, 620
MlyI GAGTC 2 cut(s) 770, 1084
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 8 cut(s) 229, 508, 544, 750, 969, 1152, 1233, 1252
Mox20I TGGCCA 2 cut(s) 48, 620
MroXI GAANNNNTTC 1 cut(s) 440
MscI TGGCCA 2 cut(s) 48, 620
MseI TTAA 2 cut(s) 309, 1127
MslI CAYNNNNRTG 2 cut(s) 508, 570
Msp20I TGGCCA 2 cut(s) 48, 620
MspI CCGG 6 cut(s) 335, 455, 485, 506, 708, 807
MspR9I CCNGG 2 cut(s) 807, 808
Mva1269I GAATGC 2 cut(s) 775, 1153
MvnI CGCG 1 cut(s) 698
MwoI GCNNNNNNNGC 6 cut(s) 368, 617, 796, 999, 1102, 1292
NciI CCSGG 2 cut(s) 807, 808
NcoI CCATGG 1 cut(s) 32
NdeII GATC 6 cut(s) 211, 289, 325, 342, 777, 1135
NheI GCTAGC 1 cut(s) 1243
NlaIII CATG 5 cut(s) 36, 104, 473, 569, 881
NlaIV GGNNCC 5 cut(s) 140, 232, 516, 1014, 1037
NmeAIII GCCGAG 1 cut(s) 259
NspI RCATGY 1 cut(s) 569
OliI CACNNNNGTG 1 cut(s) 508
PaeI GCATGC 1 cut(s) 569
PctI GAATGC 2 cut(s) 775, 1153
PdmI GAANNNNTTC 1 cut(s) 440
PfeI GAWTC 6 cut(s) 25, 64, 97, 586, 721, 1278
PkrI GCNGC 8 cut(s) 361, 430, 610, 738, 1180, 1297, 1300, 1323
PleI GAGTC 2 cut(s) 769, 1084
PpsI GAGTC 2 cut(s) 769, 1084
PsiI TTATAA 1 cut(s) 579
PspN4I GGNNCC 5 cut(s) 140, 232, 516, 1014, 1037
PspPI GGNCC 2 cut(s) 231, 991
PsrI GAACNNNNNNTAC 2 cut(s) 636, 668
PstI CTGCAG 1 cut(s) 1219
RsaI GTAC 4 cut(s) 645, 683, 695, 940
RsaNI GTAC 4 cut(s) 644, 682, 694, 939
RseI CAYNNNNRTG 2 cut(s) 508, 570
SaqAI TTAA 2 cut(s) 309, 1127
SatI GCNGC 8 cut(s) 360, 429, 609, 737, 1179, 1296, 1299, 1322
Sau3AI GATC 6 cut(s) 211, 289, 325, 342, 777, 1135
Sau96I GGNCC 2 cut(s) 231, 991
ScaI AGTACT 3 cut(s) 645, 683, 940
SchI GAGTC 2 cut(s) 770, 1084
ScrFI CCNGG 2 cut(s) 807, 808
SduI GDGCHC 4 cut(s) 916, 1017, 1038, 1272
SfaNI GCATC 3 cut(s) 196, 595, 940
SfcI CTRYAG 1 cut(s) 1215
SmaI CCCGGG 1 cut(s) 808
SmiMI CAYNNNNRTG 2 cut(s) 508, 570
SmlI CTYRAG 1 cut(s) 1361
SmoI CTYRAG 1 cut(s) 1361
SphI GCATGC 1 cut(s) 569
Sse9I AATT 4 cut(s) 669, 1026, 1097, 1128
SsiI CCGC 2 cut(s) 360, 371
SspMI CTAG 5 cut(s) 647, 936, 962, 1244, 1388
StyD4I CCNGG 2 cut(s) 805, 806
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 381
TaqI TCGA 1 cut(s) 258
TasI AATT 4 cut(s) 669, 1026, 1097, 1128
TatI WGTACW 3 cut(s) 643, 681, 938
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 6 cut(s) 25, 64, 97, 586, 721, 1278
Tru1I TTAA 2 cut(s) 309, 1127
Tru9I TTAA 2 cut(s) 309, 1127
TscAI CASTG 2 cut(s) 371, 1242
TseI GCWGC 7 cut(s) 428, 608, 736, 1178, 1295, 1298, 1321
TspDTI ATGAA 5 cut(s) 5, 89, 100, 307, 681
TspGWI ACGGA 2 cut(s) 513, 1278
TspMI CCCGGG 1 cut(s) 806
TspRI CASTG 2 cut(s) 371, 1242
XapI RAATTY 1 cut(s) 1026
XbaI TCTAGA 1 cut(s) 1387
XceI RCATGY 1 cut(s) 569
XmaI CCCGGG 1 cut(s) 806
XmnI GAANNNNTTC 1 cut(s) 440
XspI CTAG 5 cut(s) 647, 936, 962, 1244, 1388
ZrmI AGTACT 3 cut(s) 645, 683, 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.