Rmu_sc0002144.1_g000001

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002144.1
OG0000733
Physical Location & Seq
Forward (+)
1 .. 1288
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002144.1_g000001.1.cds

Sequence Viewer

Length: 536 bp
cccattggcttgataagcaaaaacccaggcccattgtgtttgtggggtttgggagtgagtgtaagctgagcaaagaacaagttcatgagataggtcatgggctggagctttcagaattgccatttatttggggactcagaaaacccaattcagctaacagtgatgaagtagatgattttctgcctttaggttttgttgacaggacatcagagaaagggcttgtttgctctggatgggtgccccaaatggaaattttggctcacccatcaattgggggctctttgtttcattctggatggggttctgtgattgagaccctgcaatttgggcattgccttgttgtgttaccctttatgtacgatcagcctttgaatgcaaggcttttggtagagaagggtctggctgccgaagcgaaacgcaacaaagacgggtcgcttagtagagaggaaatagcaaaaacattgaggctagcaatggtggaagaggaaggaaagcacttgagtagcaatgcgaggaaagctgctgcagttttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

177

Amino Acids

19.6

Weight (kDa)

6.18

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 237
AccB7I CCANNNNNTGG 1 cut(s) 271
AcsI RAATTY 1 cut(s) 251
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 1 cut(s) 372
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 4 cut(s) 66, 108, 154, 520
AluI AGCT 4 cut(s) 66, 108, 154, 520
Alw26I GTCTC 1 cut(s) 307
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 3 cut(s) 403, 520, 523
ApoI RAATTY 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 253
AsuNHI GCTAGC 1 cut(s) 468
BaeGI GKGCMC 1 cut(s) 242
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 280
BbvI GCAGC 3 cut(s) 390, 507, 510
BccI CCATC 3 cut(s) 227, 273, 290
BciT130I CCWGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 1 cut(s) 469
BfmI CTRYAG 1 cut(s) 524
BisI GCNGC 3 cut(s) 404, 521, 524
BlpI GCTNAGC 1 cut(s) 67
BlsI GCNGC 3 cut(s) 405, 522, 525
Bme1390I CCNGG 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 27
BmtI GCTAGC 1 cut(s) 472
BpmI CTGGAG 1 cut(s) 124
Bpu1102I GCTNAGC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 519
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 1 cut(s) 25
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse3DI GCAATG 3 cut(s) 330, 479, 513
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 2 cut(s) 238, 301
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMI GCAATG 3 cut(s) 330, 479, 513
BseMII CTCAG 2 cut(s) 58, 150
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 3 cut(s) 390, 507, 510
BshFI GGCC 1 cut(s) 30
BshNI GGYRCC 1 cut(s) 237
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 146
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 1 cut(s) 30
Bso31I GGTCTC 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 242, 280
Bsp143I GATC 1 cut(s) 360
Bsp1720I GCTNAGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 2 cut(s) 59, 149
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 239
BspMAI CTGCAG 1 cut(s) 528
BspOI GCTAGC 1 cut(s) 472
BspT107I GGYRCC 1 cut(s) 237
BspTNI GGTCTC 1 cut(s) 307
BsrDI GCAATG 3 cut(s) 330, 479, 513
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 470
BstDEI CTNAG 3 cut(s) 67, 136, 436
BstF5I GGATG 2 cut(s) 238, 301
BstKTI GATC 1 cut(s) 363
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 1 cut(s) 360
BstMWI GCNNNNNNNGC 4 cut(s) 15, 327, 409, 517
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 524
BstSLI GKGCMC 1 cut(s) 242
BstV1I GCAGC 3 cut(s) 390, 507, 510
BstXI CCANNNNNNTGG 1 cut(s) 128
BsuRI GGCC 1 cut(s) 30
BtsCI GGATG 2 cut(s) 238, 301
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 470
CciI TCATGA 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 357
CviAII CATG 2 cut(s) 85, 97
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 3 cut(s) 67, 136, 436
DpnI GATC 1 cut(s) 362
DpnII GATC 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 476
EarI CTCTTC 1 cut(s) 476
Eco24I GRGCYC 1 cut(s) 280
Eco31I GGTCTC 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 280
FaeI CATG 2 cut(s) 88, 100
FaiI YATR 3 cut(s) 86, 98, 355
FaqI GGGAC 1 cut(s) 146
FatI CATG 2 cut(s) 84, 96
Fnu4HI GCNGC 3 cut(s) 404, 521, 524
FokI GGATG 2 cut(s) 245, 308
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 3 cut(s) 404, 521, 524
FspBI CTAG 1 cut(s) 469
GluI GCNGC 3 cut(s) 404, 521, 524
GsuI CTGGAG 1 cut(s) 124
HaeIII GGCC 1 cut(s) 30
Hin1II CATG 2 cut(s) 88, 100
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HinfI GANTC 1 cut(s) 134
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 3 cut(s) 114, 139, 210
Hpy188III TCNNGA 3 cut(s) 85, 230, 293
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 2 cut(s) 387, 481
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 3 cut(s) 321, 376, 526
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 327, 409, 517
HpyF3I CTNAG 3 cut(s) 67, 136, 436
Hsp92II CATG 2 cut(s) 88, 100
Kzo9I GATC 1 cut(s) 360
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 8 cut(s) 12, 39, 88, 186, 215, 278, 331, 385
Lsp1109I GCAGC 3 cut(s) 390, 507, 510
MaeI CTAG 1 cut(s) 469
MaeIII GTNAC 1 cut(s) 344
MalI GATC 1 cut(s) 362
MboI GATC 1 cut(s) 360
MboII GAAGA 1 cut(s) 493
MfeI CAATTG 1 cut(s) 269
MhlI GDGCHC 2 cut(s) 242, 280
MluCI AATT 5 cut(s) 115, 147, 251, 269, 322
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 4 cut(s) 438, 458, 477, 506
MroXI GAANNNNTTC 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 27
MunI CAATTG 1 cut(s) 269
Mva1269I GAATGC 1 cut(s) 378
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 4 cut(s) 15, 327, 409, 517
NdeII GATC 1 cut(s) 360
NheI GCTAGC 1 cut(s) 468
NlaIII CATG 2 cut(s) 88, 100
NlaIV GGNNCC 1 cut(s) 239
PagI TCATGA 1 cut(s) 84
PctI GAATGC 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 271
PkrI GCNGC 3 cut(s) 405, 522, 525
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 1 cut(s) 29
PstI CTGCAG 1 cut(s) 528
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
SatI GCNGC 3 cut(s) 404, 521, 524
Sau3AI GATC 1 cut(s) 360
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 2 cut(s) 242, 280
SetI ASST 6 cut(s) 68, 96, 110, 156, 192, 522
SfcI CTRYAG 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
Sse9I AATT 5 cut(s) 115, 147, 251, 269, 322
SspMI CTAG 1 cut(s) 469
StyD4I CCNGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 160
TasI AATT 5 cut(s) 115, 147, 251, 269, 322
TscAI CASTG 1 cut(s) 165
TseI GCWGC 3 cut(s) 403, 520, 523
TspDTI ATGAA 3 cut(s) 73, 179, 277
TspRI CASTG 1 cut(s) 165
Van91I CCANNNNNTGG 1 cut(s) 271
XapI RAATTY 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.