RLG00000028054

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000733
Physical Location & Seq
Reverse (-)
18128215 .. 18129609
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028054

Sequence Viewer

Length: 1395 bp
ATGGCAAAAGAGCTTCATGTTGTGATTCTTCCATGGTCTGCCTTTGGCCATATCATCCCTTTGATTCAACTCTCCATAGCCTTAGCAAAAGCCAAGATTCATGTCTCCTTCATATCTACCCCCAAAAACATCCAAAGGCTCCCTAAAATCCCACCTGAGTTGCAATCTCTCGTAACAATAGTGCCTTTTCCTTTGCCAATTTTGGATGCTGCAGATCGGCTGTTGCCTGAAGGCGCCGAGGCCACGGTGGACATACCTTTCGAGAAAATGGACGACTTGAAGTTTGCATTTGACCTTCTACGACAACCCTTTAAGCAATTCATTGCTGATCAAGTGCCGGATTGGATCATCACCGATTTTGCTGCCCACTGGGCGGTTGACGTTGCCAAAGAATATGGTGTTCCTGTTGCCTACTTCTCTCCTTTCTCTGCTGCTAAGAATGTCTTCTGTGGTTCACCGGAATATCTCTCTTATGTTCCTCCATCACCGGAAGTATTCACCTCCCCACCGGAGTGGGTTCCTTTTCCGTCTTTGGTAGCACTCAACGAGTTTGAGGCAGTTCGTTGGCATGCTGGTGTTTATAATGTGAATCGTTCTGGGATAAGTGATGCTGCAAGGCTTGCCAAGATTGTATCAGCAAGTCAAGTACTAGCTGTTCGTAGTTGCAATGAAATTGAAGGAGAGTACTTGGATTTGTACGCGAAACTCACAGGAAAACCTGTGATTCCCACAGGTTTGCTGCCTCCAAAGAAATCAAAAATGGAGTCGGGGAATGCTGTGATCTTTGAGTGGCTTGATAAGCAGAAACCCAGGTCAGTTGTGTTTGTAGGGTTTGGGAGTGAGTGTAAGCTGAGCAAAGAACAAGTGTATGAGATAGCTCATGGTCTGGAGCTTTCAGAGTTGCCATTTCTCTGGGCACTCAGAAAACCTAGTTGGGCTAGTACTGATGCTGATGCTCTACCTCTAGGTTTTGTGGACAAAACATCAAAGAAGGGCCTTGTTTGCTTGGGATGGGTGCCCCAAATAGAAATTCTGGGGCACCCATCAGTTGGGGGTTCACTGTTTCACTCTGGATGGGGTTCTGTGATTGAGACCCTGCAATTTGGGCATTGCCTTGTTGTGTTACCCTTCATTATTGATCAGCCTCTGAATGCAAGGCTTTTGGTGGAGAAGGGTCTTGCTGCCGAAGTGAAACGCAACGAAGATGGGTCGTTTACTGCAGACGACATAGCCAAAACACTGAGGCTAGCAATGGTGGAAGAGGAAGGAGAGCACCTGAGAACCAATGCAAGGAAAGCTGCAGCTGTTTTTGGAGACGAGAAGCTGCACCAAGACCACTACCTTGGTGCATTTGTTGATTATCTCAAGAATAATGGTAGAAAAAGGTCTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

465

Amino Acids

51.28

Weight (kDa)

5.99

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 271 - 417 1.5e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AccB1I GGYRCC 3 cut(s) 233, 1015, 1038
AccB7I CCANNNNNTGG 1 cut(s) 1049
AccII CGCG 1 cut(s) 701
AciI CCGC 1 cut(s) 374
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 1029
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 4 cut(s) 648, 686, 698, 943
AfiI CCNNNNNNNGG 3 cut(s) 373, 1049, 1290
AgsI TTSAA 3 cut(s) 68, 280, 677
AjnI CCWGG 1 cut(s) 809
AjuI GAANNNNNNNTTGG 4 cut(s) 916, 948, 1014, 1046
AleI CACNNNNGTG 1 cut(s) 511
AluBI AGCT 8 cut(s) 13, 653, 850, 878, 892, 1298, 1304, 1324
AluI AGCT 8 cut(s) 13, 653, 850, 878, 892, 1298, 1304, 1324
Alw21I GWGCWC 1 cut(s) 1275
Alw26I GTCTC 3 cut(s) 109, 1085, 1308
AlwI GGATC 1 cut(s) 353
AlwNI CAGNNNCTG 1 cut(s) 1147
AoxI GGCC 3 cut(s) 46, 240, 994
ApeKI GCWGC 9 cut(s) 209, 362, 431, 611, 739, 1181, 1298, 1301, 1324
ApoI RAATTY 1 cut(s) 1029
ArsI GACNNNNNNTTYG 6 cut(s) 242, 266, 274, 298, 749, 781
Asp700I GAANNNNTTC 1 cut(s) 443
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 994
AsuHPI GGTGA 4 cut(s) 343, 447, 477, 490
AsuNHI GCTAGC 1 cut(s) 1246
BaeGI GKGCMC 3 cut(s) 919, 1020, 1041
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 3 cut(s) 233, 1015, 1038
BbsI GAAGAC 2 cut(s) 436, 1380
Bbv12I GWGCWC 1 cut(s) 1275
BbvI GCAGC 9 cut(s) 196, 349, 418, 598, 726, 1168, 1285, 1311, 1313
BccI CCATC 5 cut(s) 490, 1005, 1051, 1068, 1199
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 811
BclI TGATCA 2 cut(s) 328, 1138
BcoDI GTCTC 3 cut(s) 109, 1085, 1308
BfaI CTAG 6 cut(s) 650, 930, 939, 965, 1247, 1393
BfmI CTRYAG 3 cut(s) 210, 1218, 1299
BfoI RGCGCY 1 cut(s) 237
BglI GCCNNNNNGGC 1 cut(s) 371
BisI GCNGC 9 cut(s) 210, 363, 432, 612, 740, 1182, 1299, 1302, 1325
BlpI GCTNAGC 1 cut(s) 851
BlsI GCNGC 9 cut(s) 211, 364, 433, 613, 741, 1183, 1300, 1303, 1326
BmcAI AGTACT 3 cut(s) 648, 686, 943
Bme1390I CCNGG 1 cut(s) 811
BmgT120I GGNCC 1 cut(s) 994
BmiI GGNNCC 5 cut(s) 140, 235, 519, 1017, 1040
BmrFI CCNGG 1 cut(s) 811
BmrI ACTGGG 1 cut(s) 379
BmsI GCATC 4 cut(s) 196, 598, 937, 943
BmtI GCTAGC 1 cut(s) 1250
BmuI ACTGGG 1 cut(s) 379
BpiI GAAGAC 2 cut(s) 436, 1380
BpmI CTGGAG 1 cut(s) 908
Bpu10I CCTNAGC 1 cut(s) 82
Bpu1102I GCTNAGC 1 cut(s) 851
BpuEI CTTGAG 1 cut(s) 1349
BsaHI GRCGYC 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 1085
BsaJI CCNNGG 5 cut(s) 32, 237, 243, 809, 1342
BsaWI WCCGGW 3 cut(s) 457, 487, 508
BsaXI ACNNNNNCTCC 2 cut(s) 829, 859
Bsc4I CCNNNNNNNGG 3 cut(s) 373, 1049, 1290
Bse1I ACTGG 1 cut(s) 374
Bse3DI GCAATG 4 cut(s) 321, 673, 1108, 1257
BseBI CCWGG 1 cut(s) 811
BseDI CCNNGG 5 cut(s) 32, 237, 243, 809, 1342
BseGI GGATG 5 cut(s) 54, 129, 211, 1016, 1079
BseLI CCNNNNNNNGG 3 cut(s) 373, 1049, 1290
BseMI GCAATG 4 cut(s) 321, 673, 1108, 1257
BseMII CTCAG 5 cut(s) 147, 842, 934, 1232, 1268
BseNI ACTGG 1 cut(s) 374
BseSI GKGCMC 3 cut(s) 919, 1020, 1041
BseXI GCAGC 9 cut(s) 196, 349, 418, 598, 726, 1168, 1285, 1311, 1313
BsgI GTGCAG 1 cut(s) 1310
Bsh1236I CGCG 1 cut(s) 701
BshFI GGCC 3 cut(s) 48, 242, 996
BshNI GGYRCC 3 cut(s) 233, 1015, 1038
BsiHKAI GWGCWC 1 cut(s) 1275
BsiSI CCGG 4 cut(s) 338, 458, 488, 509
BslI CCNNNNNNNGG 3 cut(s) 373, 1049, 1290
BsmAI GTCTC 3 cut(s) 109, 1085, 1308
BsmBI CGTCTC 1 cut(s) 1308
BsmI GAATGC 2 cut(s) 778, 1156
BsnI GGCC 3 cut(s) 48, 242, 996
Bso31I GGTCTC 1 cut(s) 1085
Bsp1286I GDGCHC 4 cut(s) 919, 1020, 1041, 1275
Bsp143I GATC 5 cut(s) 214, 328, 345, 780, 1138
Bsp1720I GCTNAGC 1 cut(s) 851
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 1 cut(s) 374
BspANI GGCC 3 cut(s) 48, 242, 996
BspCNI CTCAG 5 cut(s) 148, 843, 933, 1233, 1269
BspFNI CGCG 1 cut(s) 701
BspLI GGNNCC 5 cut(s) 140, 235, 519, 1017, 1040
BspMAI CTGCAG 3 cut(s) 214, 1222, 1303
BspOI GCTAGC 1 cut(s) 1250
BspPI GGATC 1 cut(s) 353
BspT107I GGYRCC 3 cut(s) 233, 1015, 1038
BspTNI GGTCTC 1 cut(s) 1085
BsrDI GCAATG 4 cut(s) 321, 673, 1108, 1257
BsrI ACTGG 1 cut(s) 374
BssECI CCNNGG 5 cut(s) 32, 237, 243, 809, 1342
BssMI GATC 5 cut(s) 214, 328, 345, 780, 1138
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 2 cut(s) 32, 1342
Bst2UI CCWGG 1 cut(s) 811
Bst4CI ACNGT 2 cut(s) 247, 1062
Bst6I CTCTTC 1 cut(s) 1254
BstACI GRCGYC 1 cut(s) 234
BstAPI GCANNNNNTGC 1 cut(s) 620
BstC8I GCNNGC 3 cut(s) 570, 621, 1248
BstDEI CTNAG 7 cut(s) 82, 156, 435, 851, 920, 1241, 1277
BstDSI CCRYGG 2 cut(s) 32, 243
BstF5I GGATG 5 cut(s) 54, 129, 211, 1016, 1079
BstFNI CGCG 1 cut(s) 701
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 5 cut(s) 217, 331, 348, 783, 1141
BstMAI GTCTC 3 cut(s) 109, 1085, 1308
BstMBI GATC 5 cut(s) 214, 328, 345, 780, 1138
BstMWI GCNNNNNNNGC 6 cut(s) 371, 620, 799, 1002, 1105, 1295
BstNI CCWGG 1 cut(s) 811
BstNSI RCATGY 1 cut(s) 572
BstSCI CCNGG 1 cut(s) 809
BstSFI CTRYAG 3 cut(s) 210, 1218, 1299
BstSLI GKGCMC 3 cut(s) 919, 1020, 1041
BstUI CGCG 1 cut(s) 701
BstV1I GCAGC 9 cut(s) 196, 349, 418, 598, 726, 1168, 1285, 1311, 1313
BstV2I GAAGAC 2 cut(s) 436, 1380
BstXI CCANNNNNNTGG 3 cut(s) 513, 912, 1343
BsuRI GGCC 3 cut(s) 48, 242, 996
BtgI CCRYGG 2 cut(s) 32, 243
BtsCI GGATG 5 cut(s) 54, 129, 211, 1016, 1079
BtsIMutI CAGTG 3 cut(s) 367, 1058, 1238
Cac8I GCNNGC 3 cut(s) 570, 621, 1248
CaiI CAGNNNCTG 1 cut(s) 1147
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 994
Csp6I GTAC 4 cut(s) 647, 685, 697, 942
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 5 cut(s) 17, 33, 101, 569, 881
CviQI GTAC 4 cut(s) 647, 685, 697, 942
DdeI CTNAG 7 cut(s) 82, 156, 435, 851, 920, 1241, 1277
DinI GGCGCC 1 cut(s) 235
DpnI GATC 5 cut(s) 216, 330, 347, 782, 1140
DpnII GATC 5 cut(s) 214, 328, 345, 780, 1138
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 1254
EarI CTCTTC 1 cut(s) 1254
Eco130I CCWWGG 2 cut(s) 32, 1342
Eco31I GGTCTC 1 cut(s) 1085
Eco57I CTGAAG 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 994
EcoRII CCWGG 1 cut(s) 809
EcoT14I CCWWGG 2 cut(s) 32, 1342
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
ErhI CCWWGG 2 cut(s) 32, 1342
Esp3I CGTCTC 1 cut(s) 1308
FaeI CATG 5 cut(s) 20, 36, 104, 572, 884
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FatI CATG 5 cut(s) 16, 32, 100, 568, 880
FbaI TGATCA 2 cut(s) 328, 1138
Fnu4HI GCNGC 9 cut(s) 210, 363, 432, 612, 740, 1182, 1299, 1302, 1325
FokI GGATG 5 cut(s) 41, 116, 218, 1023, 1086
Fsp4HI GCNGC 9 cut(s) 210, 363, 432, 612, 740, 1182, 1299, 1302, 1325
FspBI CTAG 6 cut(s) 650, 930, 939, 965, 1247, 1393
GlaI GCGC 1 cut(s) 235
GluI GCNGC 9 cut(s) 210, 363, 432, 612, 740, 1182, 1299, 1302, 1325
GsuI CTGGAG 1 cut(s) 908
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 3 cut(s) 48, 242, 996
HapII CCGG 4 cut(s) 338, 458, 488, 509
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 5 cut(s) 20, 36, 104, 572, 884
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 6 cut(s) 25, 64, 97, 589, 724, 764
HpaII CCGG 4 cut(s) 338, 458, 488, 509
HphI GGTGA 4 cut(s) 343, 447, 477, 490
Hpy166II GTNNAC 6 cut(s) 250, 379, 455, 976, 1058, 1215
Hpy188I TCNGA 3 cut(s) 898, 923, 1149
Hpy188III TCNNGA 4 cut(s) 262, 887, 1071, 1366
Hpy8I GTNNAC 6 cut(s) 250, 379, 455, 976, 1058, 1215
HpyAV CCTTC 8 cut(s) 118, 224, 305, 671, 985, 1138, 1165, 1259
HpyCH4III ACNGT 2 cut(s) 247, 1062
HpyCH4IV ACGT 1 cut(s) 381
HpyF10VI GCNNNNNNNGC 6 cut(s) 371, 620, 799, 1002, 1105, 1295
HpyF3I CTNAG 7 cut(s) 82, 156, 435, 851, 920, 1241, 1277
HpySE526I ACGT 1 cut(s) 381
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 5 cut(s) 20, 36, 104, 572, 884
HspAI GCGC 1 cut(s) 234
KasI GGCGCC 1 cut(s) 233
Ksp22I TGATCA 2 cut(s) 328, 1138
Kzo9I GATC 5 cut(s) 214, 328, 345, 780, 1138
LmnI GCTCC 2 cut(s) 144, 889
Lsp1109I GCAGC 9 cut(s) 196, 349, 418, 598, 726, 1168, 1285, 1311, 1313
LweI GCATC 4 cut(s) 196, 598, 937, 943
MaeI CTAG 6 cut(s) 650, 930, 939, 965, 1247, 1393
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 2 cut(s) 172, 1122
MalI GATC 5 cut(s) 216, 330, 347, 782, 1140
MboI GATC 5 cut(s) 214, 328, 345, 780, 1138
MboII GAAGA 5 cut(s) 20, 436, 1214, 1271, 1380
MhlI GDGCHC 4 cut(s) 919, 1020, 1041, 1275
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 5 cut(s) 198, 317, 672, 1029, 1100
MluNI TGGCCA 1 cut(s) 48
Mly113I GGCGCC 1 cut(s) 234
MlyI GAGTC 1 cut(s) 773
MnlI CCTC 9 cut(s) 232, 489, 511, 547, 753, 972, 1155, 1236, 1255
Mox20I TGGCCA 1 cut(s) 48
MroXI GAANNNNTTC 1 cut(s) 443
MscI TGGCCA 1 cut(s) 48
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 2 cut(s) 511, 573
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 1304
MspI CCGG 4 cut(s) 338, 458, 488, 509
MspR9I CCNGG 1 cut(s) 811
Mva1269I GAATGC 2 cut(s) 778, 1156
MvaI CCWGG 1 cut(s) 811
MvnI CGCG 1 cut(s) 701
MwoI GCNNNNNNNGC 6 cut(s) 371, 620, 799, 1002, 1105, 1295
NarI GGCGCC 1 cut(s) 234
NcoI CCATGG 1 cut(s) 32
NdeII GATC 5 cut(s) 214, 328, 345, 780, 1138
NheI GCTAGC 1 cut(s) 1246
NlaIII CATG 5 cut(s) 20, 36, 104, 572, 884
NlaIV GGNNCC 5 cut(s) 140, 235, 519, 1017, 1040
NmeAIII GCCGAG 1 cut(s) 262
NspI RCATGY 1 cut(s) 572
OliI CACNNNNGTG 1 cut(s) 511
PaeI GCATGC 1 cut(s) 572
PctI GAATGC 2 cut(s) 778, 1156
PdmI GAANNNNTTC 1 cut(s) 443
PfeI GAWTC 5 cut(s) 25, 64, 97, 589, 724
PflMI CCANNNNNTGG 1 cut(s) 1049
PkrI GCNGC 9 cut(s) 211, 364, 433, 613, 741, 1183, 1300, 1303, 1326
PleI GAGTC 1 cut(s) 772
PluTI GGCGCC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 772
PsiI TTATAA 1 cut(s) 582
Psp6I CCWGG 1 cut(s) 809
PspGI CCWGG 1 cut(s) 809
PspN4I GGNNCC 5 cut(s) 140, 235, 519, 1017, 1040
PspPI GGNCC 1 cut(s) 994
PsrI GAACNNNNNNTAC 2 cut(s) 639, 671
PstI CTGCAG 3 cut(s) 214, 1222, 1303
PstNI CAGNNNCTG 1 cut(s) 1147
PvuII CAGCTG 1 cut(s) 1304
RsaI GTAC 4 cut(s) 648, 686, 698, 943
RsaNI GTAC 4 cut(s) 647, 685, 697, 942
RseI CAYNNNNRTG 2 cut(s) 511, 573
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 9 cut(s) 210, 363, 432, 612, 740, 1182, 1299, 1302, 1325
Sau3AI GATC 5 cut(s) 214, 328, 345, 780, 1138
Sau96I GGNCC 1 cut(s) 994
ScaI AGTACT 3 cut(s) 648, 686, 943
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 1 cut(s) 811
SduI GDGCHC 4 cut(s) 919, 1020, 1041, 1275
SfaNI GCATC 4 cut(s) 196, 598, 937, 943
SfcI CTRYAG 3 cut(s) 210, 1218, 1299
SfoI GGCGCC 1 cut(s) 235
SmiMI CAYNNNNRTG 2 cut(s) 511, 573
SmlI CTYRAG 1 cut(s) 1364
SmoI CTYRAG 1 cut(s) 1364
SphI GCATGC 1 cut(s) 572
Sse9I AATT 5 cut(s) 198, 317, 672, 1029, 1100
SsiI CCGC 1 cut(s) 374
SspDI GGCGCC 1 cut(s) 233
SspMI CTAG 6 cut(s) 650, 930, 939, 965, 1247, 1393
StyD4I CCNGG 1 cut(s) 809
StyI CCWWGG 2 cut(s) 32, 1342
TaaI ACNGT 2 cut(s) 247, 1062
TaiI ACGT 1 cut(s) 384
TaqI TCGA 1 cut(s) 261
TasI AATT 5 cut(s) 198, 317, 672, 1029, 1100
TatI WGTACW 3 cut(s) 646, 684, 941
TfiI GAWTC 5 cut(s) 25, 64, 97, 589, 724
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 3 cut(s) 374, 1065, 1245
TseI GCWGC 9 cut(s) 209, 362, 431, 611, 739, 1181, 1298, 1301, 1324
TspDTI ATGAA 6 cut(s) 5, 89, 100, 310, 684, 1120
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 3 cut(s) 374, 1065, 1245
Van91I CCANNNNNTGG 1 cut(s) 1049
XapI RAATTY 1 cut(s) 1029
XceI RCATGY 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 443
XspI CTAG 6 cut(s) 650, 930, 939, 965, 1247, 1393
ZrmI AGTACT 3 cut(s) 648, 686, 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.