Prupe.2G175000_v2.0.a1

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000733
Physical Location & Seq
Forward (+)
22090326 .. 22092282
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G175000.2

Sequence Viewer

Length: 1422 bp
ATGGCAAAAGATCATCTTCAGGTTGTGATGCTTCCATGGTCTGCCTTTGGCCATATGATGCCTTATTTCCAGCTCTCCATAGCCTTGGCCAAAGCCAAAGTTCATATCTTTTTCATATCCACACCAAGAAACATCCAAAGGCTCCCCAAAATCTCATCTGAATTAGAGCCTTTTGTGCATTTAGTCCCCATCCCATTTCCTCCCTTGGACCCTGGCTTCTTGCCAGAAGGTGCTGAGGCAACTGTGGATGTACCCTTTGAAAAAATTGACAACTTGAAGGCTGCATATGATCTGCTGCAGCAACCCATCAAGCACTTCATTGGGCAACATTTGCCTGATTGGATAATATCTGATTCTTTTGCTCATTGGGTGGTTGATATTGGTAAAGAGTATGGTGTTCCAGTTGGGTATTTCTCTCCTTTCTCTGCTGCTAGCAGTGTCTTCTTTGGCTCACCAGAAAATCTCTTGGGTACAAAGAGAATTCATGCTCTGCCAACACCAGCAAGTCTAACAGCACCCCCAGATTGGGTTACTTTTCCTTCAAAGGTGGCATACAGAGACTATGAGGCTGTTTATGTGCCAAGGGGATTTTTTGGATCACGTAATGGAGAAATAAGTGGTGCTGGGAGGCTTGCCAAAGTTGTTTCAGGAAGTCGAGTTTTAGCAATTAGAACTTGCAATGAGGTTGAAGGAGACTACTTAGAAGTGTACAAGAAAATCACTGGCAAGCCTATTTTCTCCACAGGTTTGCTTCCTCCAGAGCAACCTCCAAAGAGGGCAAAAGGAGAAATTACCACTGATGATGGGATCTTTGACTGGCTTGACAAGCAAAAACCCAAGTCAGTTGTGTTTGTAGGGTTTGGGAGCGAGTGTAAGCTAAGCAAAGAGCAAGTCTTTGAGATTGCTCATGGGCTGGAGCTATCAAAACTACCATTTCTCTGGGCACTCAGAAAACCCAACTGGGCAAATAGTGATGCAGGTGCTTTGCCTCAGGGTTTTGCTGACAGGACATCAGAAAAAGGGCTTGTTTGCTTTGGATGGGTGCCCCAGTTTGATATTTTGGGGCACCCATCAATTGGGGGGTCTCTGTTTCACTCTGGATGGGGCTCTGTAATTGAAACTCTGCAATTTGGGCATGTTCTTGTTGTGCTGCCACTCATTATTGATCAGCCTTTGAATGCAAGGCTTCTAGAGGAGAAGGGTCTGGCTGTTGAAGTGAAACGCAAGGAAGATGGGTCGTTTAGCAGAGATGAGATAGCCAAAACACTCAGGCATGCAATGGTGGAAGAGGAAGGAGAGCAGCTCAGAAGCAATGCAAGAAAAGCTGCAGCTGTTTTTGGAGATCACAAGCTGCACCAGGACCATTACATTGGCCAGTTTGTCCATTTTCTGAAAAATAATGTTGCAAAAAGATCATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

474

Amino Acids

52.51

Weight (kDa)

7.0

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 968
Acc36I ACCTGC 1 cut(s) 968
AccB1I GGYRCC 2 cut(s) 1042, 1065
AccB7I CCANNNNNTGG 1 cut(s) 1076
AclWI GGATC 2 cut(s) 604, 815
AcoI YGGCCR 3 cut(s) 49, 87, 1372
AcsI RAATTY 1 cut(s) 480
AfaI GTAC 3 cut(s) 252, 472, 710
AfiI CCNNNNNNNGG 3 cut(s) 525, 526, 1076
AgsI TTSAA 7 cut(s) 260, 277, 543, 689, 1118, 1177, 1214
AjnI CCWGG 2 cut(s) 211, 1356
AluBI AGCT 7 cut(s) 73, 877, 919, 1303, 1325, 1331, 1351
AluI AGCT 7 cut(s) 73, 877, 919, 1303, 1325, 1331, 1351
Alw26I GTCTC 3 cut(s) 552, 687, 1089
AlwI GGATC 2 cut(s) 604, 815
AoxI GGCC 3 cut(s) 49, 87, 1372
ApeKI GCWGC 9 cut(s) 281, 295, 298, 428, 1150, 1300, 1325, 1328, 1351
ApoI RAATTY 1 cut(s) 480
ArsI GACNNNNNNTTYG 2 cut(s) 876, 908
AspS9I GGNCC 2 cut(s) 208, 1360
AsuHPI GGTGA 1 cut(s) 444
AsuNHI GCTAGC 1 cut(s) 431
AvaII GGWCC 2 cut(s) 208, 1360
AxyI CCTNAGG 1 cut(s) 990
BaeGI GKGCMC 3 cut(s) 946, 1047, 1068
BalI TGGCCA 3 cut(s) 51, 89, 1374
BanI GGYRCC 2 cut(s) 1042, 1065
BanII GRGCYC 1 cut(s) 1109
BbsI GAAGAC 1 cut(s) 433
BbvCI CCTCAGC 1 cut(s) 234
BbvI GCAGC 9 cut(s) 268, 282, 310, 415, 1137, 1312, 1312, 1338, 1340
BccI CCATC 7 cut(s) 197, 314, 797, 1032, 1078, 1095, 1226
BciT130I CCWGG 2 cut(s) 213, 1358
BclI TGATCA 1 cut(s) 1165
BcoDI GTCTC 3 cut(s) 552, 687, 1089
BfaI CTAG 3 cut(s) 432, 1190, 1420
BfmI CTRYAG 2 cut(s) 296, 1326
BfuAI ACCTGC 1 cut(s) 968
BisI GCNGC 9 cut(s) 282, 296, 299, 429, 1151, 1301, 1326, 1329, 1352
BlpI GCTNAGC 1 cut(s) 878
BlsI GCNGC 9 cut(s) 283, 297, 300, 430, 1152, 1302, 1327, 1330, 1353
Bme1390I CCNGG 2 cut(s) 213, 1358
Bme18I GGWCC 2 cut(s) 208, 1360
BmgT120I GGNCC 2 cut(s) 208, 1360
BmiI GGNNCC 4 cut(s) 143, 210, 1044, 1067
BmrFI CCNGG 2 cut(s) 213, 1358
BmrI ACTGGG 2 cut(s) 970, 1042
BmsI GCATC 3 cut(s) 18, 48, 964
BmtI GCTAGC 1 cut(s) 435
BmuI ACTGGG 2 cut(s) 970, 1042
BpiI GAAGAC 1 cut(s) 433
BplI GAGNNNNNCTC 2 cut(s) 1287, 1319
BpmI CTGGAG 2 cut(s) 741, 935
Bpu10I CCTNAGC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 878
BsaAI YACGTR 1 cut(s) 602
BsaI GGTCTC 1 cut(s) 1089
BsaJI CCNNGG 5 cut(s) 35, 84, 204, 211, 581
BsaXI ACNNNNNCTCC 2 cut(s) 856, 886
Bsc4I CCNNNNNNNGG 3 cut(s) 525, 526, 1076
Bse1I ACTGG 6 cut(s) 401, 727, 821, 965, 1048, 1375
Bse21I CCTNAGG 1 cut(s) 990
Bse3DI GCAATG 3 cut(s) 685, 1284, 1318
BseBI CCWGG 2 cut(s) 213, 1358
BseDI CCNNGG 5 cut(s) 35, 84, 204, 211, 581
BseGI GGATG 6 cut(s) 132, 189, 253, 1043, 1106, 1415
BseLI CCNNNNNNNGG 3 cut(s) 525, 526, 1076
BseMI GCAATG 3 cut(s) 685, 1284, 1318
BseMII CTCAG 5 cut(s) 225, 961, 1004, 1282, 1318
BseNI ACTGG 6 cut(s) 401, 727, 821, 965, 1048, 1375
BseRI GAGGAG 1 cut(s) 1208
BseSI GKGCMC 3 cut(s) 946, 1047, 1068
BseXI GCAGC 9 cut(s) 268, 282, 310, 415, 1137, 1312, 1312, 1338, 1340
BseYI CCCAGC 1 cut(s) 623
BsgI GTGCAG 1 cut(s) 1337
BshFI GGCC 3 cut(s) 51, 89, 1374
BshNI GGYRCC 2 cut(s) 1042, 1065
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 3 cut(s) 525, 526, 1076
BsmAI GTCTC 3 cut(s) 552, 687, 1089
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 1183
BsnI GGCC 3 cut(s) 51, 89, 1374
Bso31I GGTCTC 1 cut(s) 1089
Bsp1286I GDGCHC 4 cut(s) 946, 1047, 1068, 1109
Bsp1407I TGTACA 1 cut(s) 708
Bsp143I GATC 7 cut(s) 10, 289, 596, 807, 1165, 1342, 1412
Bsp1720I GCTNAGC 1 cut(s) 878
Bsp19I CCATGG 1 cut(s) 35
BspANI GGCC 3 cut(s) 51, 89, 1374
BspCNI CTCAG 5 cut(s) 226, 960, 1003, 1281, 1317
BspLI GGNNCC 4 cut(s) 143, 210, 1044, 1067
BspMAI CTGCAG 2 cut(s) 300, 1330
BspMI ACCTGC 1 cut(s) 968
BspOI GCTAGC 1 cut(s) 435
BspPI GGATC 2 cut(s) 604, 815
BspT107I GGYRCC 2 cut(s) 1042, 1065
BspTNI GGTCTC 1 cut(s) 1089
BsrDI GCAATG 3 cut(s) 685, 1284, 1318
BsrGI TGTACA 1 cut(s) 708
BsrI ACTGG 6 cut(s) 401, 727, 821, 965, 1048, 1375
BssECI CCNNGG 5 cut(s) 35, 84, 204, 211, 581
BssMI GATC 7 cut(s) 10, 289, 596, 807, 1165, 1342, 1412
BssT1I CCWWGG 4 cut(s) 35, 84, 204, 581
Bst2UI CCWGG 2 cut(s) 213, 1358
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 1281
BstAPI GCANNNNNTGC 1 cut(s) 331
BstAUI TGTACA 1 cut(s) 708
BstBAI YACGTR 1 cut(s) 602
BstC8I GCNNGC 4 cut(s) 433, 633, 728, 1275
BstDEI CTNAG 7 cut(s) 234, 700, 878, 947, 990, 1268, 1304
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 6 cut(s) 132, 189, 253, 1043, 1106, 1415
BstKTI GATC 7 cut(s) 13, 292, 599, 810, 1168, 1345, 1415
BstMAI GTCTC 3 cut(s) 552, 687, 1089
BstMBI GATC 7 cut(s) 10, 289, 596, 807, 1165, 1342, 1412
BstMWI GCNNNNNNNGC 5 cut(s) 175, 331, 826, 1132, 1322
BstNI CCWGG 2 cut(s) 213, 1358
BstNSI RCATGY 2 cut(s) 1139, 1277
BstSCI CCNGG 2 cut(s) 211, 1356
BstSFI CTRYAG 2 cut(s) 296, 1326
BstSLI GKGCMC 3 cut(s) 946, 1047, 1068
BstV1I GCAGC 9 cut(s) 268, 282, 310, 415, 1137, 1312, 1312, 1338, 1340
BstV2I GAAGAC 1 cut(s) 433
BstX2I RGATCY 1 cut(s) 807
BstXI CCANNNNNNTGG 3 cut(s) 85, 939, 1370
BstYI RGATCY 1 cut(s) 807
Bsu36I CCTNAGG 1 cut(s) 990
BsuRI GGCC 3 cut(s) 51, 89, 1374
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 6 cut(s) 132, 189, 253, 1043, 1106, 1415
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 3 cut(s) 442, 720, 795
BveI ACCTGC 1 cut(s) 968
Cac8I GCNNGC 4 cut(s) 433, 633, 728, 1275
Cfr13I GGNCC 2 cut(s) 208, 1360
Csp6I GTAC 3 cut(s) 251, 471, 709
CviAII CATG 5 cut(s) 36, 485, 908, 1136, 1274
CviQI GTAC 3 cut(s) 251, 471, 709
DdeI CTNAG 7 cut(s) 234, 700, 878, 947, 990, 1268, 1304
DpnI GATC 7 cut(s) 12, 291, 598, 809, 1167, 1344, 1414
DpnII GATC 7 cut(s) 10, 289, 596, 807, 1165, 1342, 1412
EaeI YGGCCR 3 cut(s) 49, 87, 1372
Eam1104I CTCTTC 1 cut(s) 1281
EarI CTCTTC 1 cut(s) 1281
Eco130I CCWWGG 4 cut(s) 35, 84, 204, 581
Eco24I GRGCYC 1 cut(s) 1109
Eco31I GGTCTC 1 cut(s) 1089
Eco47I GGWCC 2 cut(s) 208, 1360
Eco81I CCTNAGG 1 cut(s) 990
EcoRI GAATTC 1 cut(s) 480
EcoRII CCWGG 2 cut(s) 211, 1356
EcoT14I CCWWGG 4 cut(s) 35, 84, 204, 581
EcoT38I GRGCYC 1 cut(s) 1109
ErhI CCWWGG 4 cut(s) 35, 84, 204, 581
FaeI CATG 5 cut(s) 39, 488, 911, 1139, 1277
FalI AAGNNNNNCTT 1 cut(s) 32
FaqI GGGAC 1 cut(s) 170
FatI CATG 5 cut(s) 35, 484, 907, 1135, 1273
FauNDI CATATG 2 cut(s) 54, 286
FbaI TGATCA 1 cut(s) 1165
Fnu4HI GCNGC 9 cut(s) 282, 296, 299, 429, 1151, 1301, 1326, 1329, 1352
FokI GGATG 6 cut(s) 119, 176, 260, 1050, 1113, 1402
FriOI GRGCYC 1 cut(s) 1109
Fsp4HI GCNGC 9 cut(s) 282, 296, 299, 429, 1151, 1301, 1326, 1329, 1352
FspBI CTAG 3 cut(s) 432, 1190, 1420
GluI GCNGC 9 cut(s) 282, 296, 299, 429, 1151, 1301, 1326, 1329, 1352
GsaI CCCAGC 1 cut(s) 627
GsuI CTGGAG 2 cut(s) 741, 935
HaeIII GGCC 3 cut(s) 51, 89, 1374
Hin1II CATG 5 cut(s) 39, 488, 911, 1139, 1277
HinfI GANTC 1 cut(s) 353
HphI GGTGA 1 cut(s) 444
Hpy166II GTNNAC 1 cut(s) 709
Hpy188I TCNGA 6 cut(s) 160, 352, 950, 1015, 1307, 1392
Hpy188III TCNNGA 4 cut(s) 648, 758, 1098, 1190
Hpy8I GTNNAC 1 cut(s) 709
HpyAV CCTTC 6 cut(s) 221, 271, 549, 683, 1192, 1286
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 601
HpyF10VI GCNNNNNNNGC 5 cut(s) 175, 331, 826, 1132, 1322
HpyF3I CTNAG 7 cut(s) 234, 700, 878, 947, 990, 1268, 1304
HpySE526I ACGT 1 cut(s) 601
Hsp92II CATG 5 cut(s) 39, 488, 911, 1139, 1277
Ksp22I TGATCA 1 cut(s) 1165
Kzo9I GATC 7 cut(s) 10, 289, 596, 807, 1165, 1342, 1412
LmnI GCTCC 3 cut(s) 147, 864, 916
Lsp1109I GCAGC 9 cut(s) 268, 282, 310, 415, 1137, 1312, 1312, 1338, 1340
LweI GCATC 3 cut(s) 18, 48, 964
MaeI CTAG 3 cut(s) 432, 1190, 1420
MaeII ACGT 1 cut(s) 601
MaeIII GTNAC 1 cut(s) 529
MalI GATC 7 cut(s) 12, 291, 598, 809, 1167, 1344, 1414
MboI GATC 7 cut(s) 10, 289, 596, 807, 1165, 1342, 1412
MboII GAAGA 4 cut(s) 8, 433, 1241, 1298
MfeI CAATTG 1 cut(s) 1074
MflI RGATCY 1 cut(s) 807
MhlI GDGCHC 4 cut(s) 946, 1047, 1068, 1109
MlsI TGGCCA 3 cut(s) 51, 89, 1374
MluCI AATT 8 cut(s) 161, 264, 480, 666, 789, 1074, 1113, 1127
MluNI TGGCCA 3 cut(s) 51, 89, 1374
Mox20I TGGCCA 3 cut(s) 51, 89, 1374
MscI TGGCCA 3 cut(s) 51, 89, 1374
Msp20I TGGCCA 3 cut(s) 51, 89, 1374
MspA1I CMGCKG 1 cut(s) 1331
MspR9I CCNGG 2 cut(s) 213, 1358
MunI CAATTG 1 cut(s) 1074
Mva1269I GAATGC 1 cut(s) 1183
MvaI CCWGG 2 cut(s) 213, 1358
MwoI GCNNNNNNNGC 5 cut(s) 175, 331, 826, 1132, 1322
NcoI CCATGG 1 cut(s) 35
NdeI CATATG 2 cut(s) 54, 286
NdeII GATC 7 cut(s) 10, 289, 596, 807, 1165, 1342, 1412
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 5 cut(s) 39, 488, 911, 1139, 1277
NlaIV GGNNCC 4 cut(s) 143, 210, 1044, 1067
NspI RCATGY 2 cut(s) 1139, 1277
PaeI GCATGC 1 cut(s) 1277
PaqCI CACCTGC 1 cut(s) 968
PctI GAATGC 1 cut(s) 1183
PfeI GAWTC 1 cut(s) 353
PflMI CCANNNNNTGG 1 cut(s) 1076
PkrI GCNGC 9 cut(s) 283, 297, 300, 430, 1152, 1302, 1327, 1330, 1353
Ppu21I YACGTR 1 cut(s) 602
Psp6I CCWGG 2 cut(s) 211, 1356
PspFI CCCAGC 1 cut(s) 623
PspGI CCWGG 2 cut(s) 211, 1356
PspN4I GGNNCC 4 cut(s) 143, 210, 1044, 1067
PspPI GGNCC 2 cut(s) 208, 1360
PstI CTGCAG 2 cut(s) 300, 1330
PsuI RGATCY 1 cut(s) 807
PvuII CAGCTG 1 cut(s) 1331
RsaI GTAC 3 cut(s) 252, 472, 710
RsaNI GTAC 3 cut(s) 251, 471, 709
SatI GCNGC 9 cut(s) 282, 296, 299, 429, 1151, 1301, 1326, 1329, 1352
Sau3AI GATC 7 cut(s) 10, 289, 596, 807, 1165, 1342, 1412
Sau96I GGNCC 2 cut(s) 208, 1360
ScrFI CCNGG 2 cut(s) 213, 1358
SduI GDGCHC 4 cut(s) 946, 1047, 1068, 1109
SfaNI GCATC 3 cut(s) 18, 48, 964
SfcI CTRYAG 2 cut(s) 296, 1326
SinI GGWCC 2 cut(s) 208, 1360
SphI GCATGC 1 cut(s) 1277
Sse9I AATT 8 cut(s) 161, 264, 480, 666, 789, 1074, 1113, 1127
SspMI CTAG 3 cut(s) 432, 1190, 1420
StyD4I CCNGG 2 cut(s) 211, 1356
StyI CCWWGG 4 cut(s) 35, 84, 204, 581
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 604
TaqI TCGA 1 cut(s) 655
TasI AATT 8 cut(s) 161, 264, 480, 666, 789, 1074, 1113, 1127
TatI WGTACW 1 cut(s) 708
TfiI GAWTC 1 cut(s) 353
TscAI CASTG 3 cut(s) 442, 727, 802
TseI GCWGC 9 cut(s) 281, 295, 298, 428, 1150, 1300, 1325, 1328, 1351
TspDTI ATGAA 4 cut(s) 92, 103, 307, 473
TspRI CASTG 3 cut(s) 442, 727, 802
Van91I CCANNNNNTGG 1 cut(s) 1076
VpaK11BI GGWCC 2 cut(s) 208, 1360
XapI RAATTY 1 cut(s) 480
XbaI TCTAGA 1 cut(s) 1189
XceI RCATGY 2 cut(s) 1139, 1277
XspI CTAG 3 cut(s) 432, 1190, 1420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.