pycom07g13020

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000733
Physical Location & Seq
Forward (+)
14524575 .. 14525984
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g13020.1

Sequence Viewer

Length: 1410 bp
ATGGGAAAAAATGTGAGAGTTGTGATGCTTCCATATTCCGCCTTCGGCCACATAATGCCTTACTTTCAACTCTCCATTGCCTTGGCAAAGTCCAACGTTCATGTCTATTTCATATCCACCCCAAGAAACATCCAGAGGCTTCCCAAAATTCCATCTGATTTGAACCCTTTTATCCATTTAGTCCCCATCCCATTTCCTCCGCTGGATCCCGACTTCTTGCCGGAAGGAGCGGAGGCCACGGTGGATCTACCCTTCGAAAAACTCGACAACTTGAAGGTTGCATATGATCTGCTGCAGCAACCCATTAAGCAGTTCATTGGGGAGGAGTTGCCGGATTGGATAATATCTGATTTTGCAGCTCATTGGGTTGTCGACATTGCCAAAGAGTATGGTGTTTCAATTGCGTGGTTCTCTCCTTTCTCTGCTGCTTGCAATGTGTTTTTCGGCTCAGTGGAAAACCTCTTGGGTACGAATAGAAATCATGCTATCCCAACACCGGAAAGTCTAACTTCACCCCCGGATTGGGTTAGTTTTCCTTCATCGGTTGCGTATAGAGACTTCGTGGCACCTTATGTGGCGCGAGGCTTTTTTGGAGTCAATAAAAGTGGGATGAGTGATTCTGCAAGGCTTGCCAAGATTTTATCTGCAAGTCAAGCTTTAGCCATTCGAACTTGCGATGAGGTAGAAGGAGAATATTTGGAGGTTTTCAAGAAAATTACAGGAAAGCCTGTGATTTCCACAGGTTTGCTTCCTCCAGATCAACCTGCACAGAGGGAAAAAGGGGGAATTTCTACCAATGATGGGATCTTTGAATGGCTTGATAGGCGGAAAAACAAGTCAGTTGTGTTTGTAGGGTTTGGGACTGAGTGTAAGTTGAGTCAAGAGCAAGTCTTTGAGATAGGTTCTGGGCTGGAGTTATCAGGACTCCCATTTCTTTGGGCACTCAGAAAACCCAACTGGGCAAAAAGTGATGCTGATGCTTTACCGCCTGGTTTTGCTGAGCGAACATCAGAGAGAGGACTTGTTTGTTTCGGGTGGGTGCCCCAGATCGAGATTCTGGGGCACCCGTCAGTTGGCGGTTCTTTGTTTCACTCTGGATGGGGATCTGTGATTGAAACTCTACAATTTGGGCATGCTCTTGTTGTGCTACCATTGATTATCGATCAGCCTCTGAATGCAAGGCTTTTGGAAGACAAGGGTCTGGCTGTGGAAGTGCAATGCAGCGGAGATTGGTCGTTTAGTAAAGATGAGATAGCCAAAACCCTGAGACATGCAATGGTGGAAGAGGAAGGAGAGCAGCTGAGATCCAATGCAAGGAAAGCTGCAGCTGTTTTTGGTGATCACAAGCTGCACCAAGACCACTACATCGGGCAGTTTGTCAACTTTCTGAAGAGTAAGGTAGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

470

Amino Acids

51.83

Weight (kDa)

5.69

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 278 - 423 2.6e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 772
AccB1I GGYRCC 3 cut(s) 565, 1039, 1062
AccBSI CCGCTC 1 cut(s) 230
AccI GTMKAC 1 cut(s) 372
AccII CGCG 1 cut(s) 580
AciI CCGC 7 cut(s) 39, 200, 230, 826, 986, 1077, 1224
AclI AACGTT 1 cut(s) 96
AclWI GGATC 6 cut(s) 200, 213, 252, 812, 1111, 1299
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 2 cut(s) 147, 786
AcuI CTGAAG 1 cut(s) 1409
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 6 cut(s) 496, 522, 523, 801, 1073, 1314
AgsI TTSAA 7 cut(s) 68, 163, 274, 399, 709, 812, 1115
AjnI CCWGG 1 cut(s) 988
AluBI AGCT 6 cut(s) 359, 656, 1300, 1322, 1328, 1348
AluI AGCT 6 cut(s) 359, 656, 1300, 1322, 1328, 1348
Alw26I GTCTC 2 cut(s) 549, 1261
AlwI GGATC 6 cut(s) 200, 213, 252, 812, 1111, 1299
AlwNI CAGNNNCTG 1 cut(s) 1171
AoxI GGCC 2 cut(s) 46, 234
ApoI RAATTY 2 cut(s) 147, 786
AspLEI GCGC 1 cut(s) 580
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 2 cut(s) 504, 1349
AsuII TTCGAA 2 cut(s) 255, 667
BaeGI GKGCMC 3 cut(s) 943, 1044, 1065
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 3 cut(s) 565, 1039, 1062
BarI GAAGNNNNNNTAC 2 cut(s) 542, 574
BbsI GAAGAC 1 cut(s) 1197
BbvI GCAGC 9 cut(s) 279, 307, 368, 412, 1233, 1309, 1309, 1335, 1337
BccI CCATC 4 cut(s) 160, 194, 794, 1092
BciT130I CCWGG 1 cut(s) 990
BclI TGATCA 1 cut(s) 1339
BcnI CCSGG 1 cut(s) 518
BcoDI GTCTC 2 cut(s) 549, 1261
BfmI CTRYAG 2 cut(s) 293, 1323
BfuAI ACCTGC 1 cut(s) 772
BlpI GCTNAGC 1 cut(s) 999
Bme1390I CCNGG 2 cut(s) 518, 990
BmiI GGNNCC 4 cut(s) 207, 567, 1041, 1064
BmrFI CCNGG 2 cut(s) 518, 990
BmrI ACTGGG 1 cut(s) 967
BmsI GCATC 3 cut(s) 15, 961, 967
BmuI ACTGGG 1 cut(s) 967
BoxI GACNNNNGTC 1 cut(s) 1197
BpiI GAAGAC 1 cut(s) 1197
BpmI CTGGAG 2 cut(s) 738, 932
Bpu1102I GCTNAGC 1 cut(s) 999
Bpu14I TTCGAA 2 cut(s) 255, 667
BpuMI CCSGG 1 cut(s) 518
Bsa29I ATCGAT 1 cut(s) 1161
BsaBI GATNNNNATC 1 cut(s) 1102
BsaJI CCNNGG 3 cut(s) 81, 237, 516
BsaWI WCCGGW 1 cut(s) 496
Bsc4I CCNNNNNNNGG 6 cut(s) 496, 522, 523, 801, 1073, 1314
Bse1I ACTGG 1 cut(s) 962
Bse3DI GCAATG 5 cut(s) 75, 375, 439, 1223, 1281
Bse8I GATNNNNATC 1 cut(s) 1102
BseBI CCWGG 1 cut(s) 990
BseCI ATCGAT 1 cut(s) 1161
BseDI CCNNGG 3 cut(s) 81, 237, 516
BseGI GGATG 4 cut(s) 129, 186, 615, 1103
BseJI GATNNNNATC 1 cut(s) 1102
BseLI CCNNNNNNNGG 6 cut(s) 496, 522, 523, 801, 1073, 1314
BseMI GCAATG 5 cut(s) 75, 375, 439, 1223, 1281
BseMII CTCAG 6 cut(s) 462, 855, 958, 990, 1256, 1292
BseNI ACTGG 1 cut(s) 962
BseRI GAGGAG 1 cut(s) 338
BseSI GKGCMC 3 cut(s) 943, 1044, 1065
BseXI GCAGC 9 cut(s) 279, 307, 368, 412, 1233, 1309, 1309, 1335, 1337
BsgI GTGCAG 2 cut(s) 750, 1334
Bsh1236I CGCG 1 cut(s) 580
BshFI GGCC 2 cut(s) 48, 236
BshNI GGYRCC 3 cut(s) 565, 1039, 1062
BshVI ATCGAT 1 cut(s) 1161
BsiSI CCGG 4 cut(s) 221, 332, 497, 518
BslFI GGGAC 2 cut(s) 167, 874
BslI CCNNNNNNNGG 6 cut(s) 496, 522, 523, 801, 1073, 1314
BsmAI GTCTC 2 cut(s) 549, 1261
BsmFI GGGAC 2 cut(s) 167, 874
BsmI GAATGC 1 cut(s) 1180
BsnI GGCC 2 cut(s) 48, 236
Bsp119I TTCGAA 2 cut(s) 255, 667
Bsp1286I GDGCHC 3 cut(s) 943, 1044, 1065
Bsp1720I GCTNAGC 1 cut(s) 999
BspACI CCGC 7 cut(s) 39, 200, 230, 826, 986, 1077, 1224
BspANI GGCC 2 cut(s) 48, 236
BspCNI CTCAG 6 cut(s) 461, 856, 957, 991, 1257, 1293
BspDI ATCGAT 1 cut(s) 1161
BspFNI CGCG 1 cut(s) 580
BspLI GGNNCC 4 cut(s) 207, 567, 1041, 1064
BspMAI CTGCAG 2 cut(s) 297, 1327
BspMI ACCTGC 1 cut(s) 772
BspPI GGATC 6 cut(s) 200, 213, 252, 812, 1111, 1299
BspT104I TTCGAA 2 cut(s) 255, 667
BspT107I GGYRCC 3 cut(s) 565, 1039, 1062
BsrBI CCGCTC 1 cut(s) 230
BsrDI GCAATG 5 cut(s) 75, 375, 439, 1223, 1281
BsrI ACTGG 1 cut(s) 962
BssECI CCNNGG 3 cut(s) 81, 237, 516
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 990
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 2 cut(s) 1278, 1385
BstAPI GCANNNNNTGC 1 cut(s) 629
BstBI TTCGAA 2 cut(s) 255, 667
BstC8I GCNNGC 3 cut(s) 430, 630, 1134
BstDEI CTNAG 6 cut(s) 448, 864, 944, 999, 1265, 1301
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 4 cut(s) 129, 186, 615, 1103
BstFNI CGCG 1 cut(s) 580
BstHHI GCGC 1 cut(s) 580
BstMAI GTCTC 2 cut(s) 549, 1261
BstMWI GCNNNNNNNGC 4 cut(s) 629, 653, 823, 1319
BstNI CCWGG 1 cut(s) 990
BstNSI RCATGY 2 cut(s) 1136, 1274
BstPAI GACNNNNGTC 1 cut(s) 1197
BstSCI CCNGG 2 cut(s) 516, 988
BstSFI CTRYAG 2 cut(s) 293, 1323
BstSLI GKGCMC 3 cut(s) 943, 1044, 1065
BstUI CGCG 1 cut(s) 580
BstV1I GCAGC 9 cut(s) 279, 307, 368, 412, 1233, 1309, 1309, 1335, 1337
BstV2I GAAGAC 1 cut(s) 1197
BstX2I RGATCY 5 cut(s) 205, 244, 804, 1103, 1304
BstXI CCANNNNNNTGG 2 cut(s) 82, 936
BstYI RGATCY 5 cut(s) 205, 244, 804, 1103, 1304
Bsu15I ATCGAT 1 cut(s) 1161
BsuRI GGCC 2 cut(s) 48, 236
BsuTUI ATCGAT 1 cut(s) 1161
BtgI CCRYGG 1 cut(s) 237
BtgZI GCGATG 1 cut(s) 690
BtsCI GGATG 4 cut(s) 129, 186, 615, 1103
BtsIMutI CAGTG 1 cut(s) 456
BveI ACCTGC 1 cut(s) 772
Cac8I GCNNGC 3 cut(s) 430, 630, 1134
CaiI CAGNNNCTG 1 cut(s) 1171
CfoI GCGC 1 cut(s) 580
ClaI ATCGAT 1 cut(s) 1161
Csp6I GTAC 1 cut(s) 468
CspCI CAANNNNNGTGG 2 cut(s) 586, 621
CviAII CATG 4 cut(s) 101, 482, 1133, 1271
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 6 cut(s) 448, 864, 944, 999, 1265, 1301
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 1278, 1385
EarI CTCTTC 2 cut(s) 1278, 1385
EciI GGCGGA 2 cut(s) 28, 841
Eco130I CCWWGG 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 1409
EcoRII CCWGG 1 cut(s) 988
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 4 cut(s) 104, 485, 1136, 1274
FalI AAGNNNNNCTT 4 cut(s) 493, 525, 640, 672
FaqI GGGAC 2 cut(s) 167, 874
FatI CATG 4 cut(s) 100, 481, 1132, 1270
FauNDI CATATG 1 cut(s) 283
FbaI TGATCA 1 cut(s) 1339
FblI GTMKAC 1 cut(s) 372
FokI GGATG 4 cut(s) 116, 173, 622, 1110
GlaI GCGC 1 cut(s) 579
GsuI CTGGAG 2 cut(s) 738, 932
HaeIII GGCC 2 cut(s) 48, 236
HapII CCGG 4 cut(s) 221, 332, 497, 518
HhaI GCGC 1 cut(s) 580
Hin1II CATG 4 cut(s) 104, 485, 1136, 1274
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HincII GTYRAC 2 cut(s) 373, 1381
HindII GTYRAC 2 cut(s) 373, 1381
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 5 cut(s) 594, 617, 877, 924, 1054
HpaII CCGG 4 cut(s) 221, 332, 497, 518
HphI GGTGA 2 cut(s) 504, 1349
Hpy166II GTNNAC 2 cut(s) 373, 1381
Hpy188I TCNGA 6 cut(s) 157, 349, 947, 1012, 1173, 1389
Hpy188III TCNNGA 8 cut(s) 133, 209, 709, 755, 881, 921, 1051, 1095
Hpy8I GTNNAC 2 cut(s) 373, 1381
HpyAV CCTTC 7 cut(s) 52, 218, 262, 268, 546, 680, 1283
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 4 cut(s) 629, 653, 823, 1319
HpyF3I CTNAG 6 cut(s) 448, 864, 944, 999, 1265, 1301
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 4 cut(s) 104, 485, 1136, 1274
HspAI GCGC 1 cut(s) 578
Ksp22I TGATCA 1 cut(s) 1339
LmnI GCTCC 1 cut(s) 227
Lsp1109I GCAGC 9 cut(s) 279, 307, 368, 412, 1233, 1309, 1309, 1335, 1337
LweI GCATC 3 cut(s) 15, 961, 967
MaeII ACGT 1 cut(s) 96
MbiI CCGCTC 1 cut(s) 230
MboII GAAGA 3 cut(s) 1202, 1295, 1402
MfeI CAATTG 1 cut(s) 399
MflI RGATCY 5 cut(s) 205, 244, 804, 1103, 1304
MhlI GDGCHC 3 cut(s) 943, 1044, 1065
MluCI AATT 5 cut(s) 147, 399, 714, 786, 1124
MlyI GAGTC 3 cut(s) 603, 886, 918
MmeI TCCRAC 1 cut(s) 117
MseI TTAA 1 cut(s) 306
MspA1I CMGCKG 4 cut(s) 202, 1224, 1300, 1328
MspI CCGG 4 cut(s) 221, 332, 497, 518
MspR9I CCNGG 2 cut(s) 518, 990
MunI CAATTG 1 cut(s) 399
Mva1269I GAATGC 1 cut(s) 1180
MvaI CCWGG 1 cut(s) 990
MvnI CGCG 1 cut(s) 580
MwoI GCNNNNNNNGC 4 cut(s) 629, 653, 823, 1319
NciI CCSGG 1 cut(s) 518
NdeI CATATG 1 cut(s) 283
NlaIII CATG 4 cut(s) 104, 485, 1136, 1274
NlaIV GGNNCC 4 cut(s) 207, 567, 1041, 1064
NspI RCATGY 2 cut(s) 1136, 1274
NspV TTCGAA 2 cut(s) 255, 667
PaeI GCATGC 1 cut(s) 1136
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PctI GAATGC 1 cut(s) 1180
PfeI GAWTC 2 cut(s) 617, 1054
PleI GAGTC 3 cut(s) 602, 885, 918
PpsI GAGTC 3 cut(s) 602, 885, 918
PshAI GACNNNNGTC 1 cut(s) 1197
Psp1406I AACGTT 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 988
PspGI CCWGG 1 cut(s) 988
PspN4I GGNNCC 4 cut(s) 207, 567, 1041, 1064
PstI CTGCAG 2 cut(s) 297, 1327
PstNI CAGNNNCTG 1 cut(s) 1171
PsuI RGATCY 5 cut(s) 205, 244, 804, 1103, 1304
PvuII CAGCTG 2 cut(s) 1300, 1328
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
SalI GTCGAC 1 cut(s) 371
SaqAI TTAA 1 cut(s) 306
SchI GAGTC 3 cut(s) 603, 886, 918
ScrFI CCNGG 2 cut(s) 518, 990
SduI GDGCHC 3 cut(s) 943, 1044, 1065
SfaNI GCATC 3 cut(s) 15, 961, 967
SfcI CTRYAG 2 cut(s) 293, 1323
SfuI TTCGAA 2 cut(s) 255, 667
SphI GCATGC 1 cut(s) 1136
Sse9I AATT 5 cut(s) 147, 399, 714, 786, 1124
SsiI CCGC 7 cut(s) 39, 200, 230, 826, 986, 1077, 1224
SspI AATATT 1 cut(s) 695
StyD4I CCNGG 2 cut(s) 516, 988
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 1 cut(s) 99
TaqI TCGA 6 cut(s) 255, 264, 372, 667, 1050, 1161
TasI AATT 5 cut(s) 147, 399, 714, 786, 1124
TfiI GAWTC 2 cut(s) 617, 1054
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 456
TspDTI ATGAA 4 cut(s) 89, 100, 304, 528
TspRI CASTG 1 cut(s) 456
XapI RAATTY 2 cut(s) 147, 786
XceI RCATGY 2 cut(s) 1136, 1274
XmiI GTMKAC 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.