Rorug01G0254000

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000733
Physical Location & Seq
Forward (+)
36349909 .. 36350946
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0254000.1

Sequence Viewer

Length: 1038 bp
ATGGCAGATCAACAATCCTCAATCGACCCCTACAAGTTCCTCAACATCGTTCCCAACCCAGATGGCTCACTCACCCGCCTCGCCCCACTCCCATTCGCACCCACAACCGAGTCAATCCCCGCCGATTCTGATCCCAACTCATCCCAACTCGTCCTCTCCAAGGACATCCCTCTCGACCCAAAATCCAAAACCTCCCTCCGCCTCTTCAAACCCAACAATCTCCCCCCAAACCCAAACCCAAACCCAAACCATAACCTCCCTCTCCTCATCTACATCCACGGCGGCGGCTTCATCATCTGCAGCGCCGCCTCTCAGCCTTTCCACCACTGCTGCTCTCGCCTCGCCCTCTCCATCCCAGCCCTAGTCCTCTCCGTCGAGTACCGTCTCGCCCCCGAGCACCGCCTCCCCGCCGCCTACGACGACGCCGTTTCGGCCATCACCTGGCTCAAAAACCAGGCCTCCTCTGCCGACGGAGATTCGTGGCTGAAAAACTCCGTTGATTTCTCCAAGTGTTTCATCATGGGAACTAGCGCGGGATCCAATATCGCCTACCACGCGGGTCTACGCGCTTCCGATATGGACCTCTCCCCGATCAAAATCCGAGGGCTGATATTGCACCAGGCGTATATCGGCGGGGTCAACAGGACCGAATCCGAGATCAGGTTAGTCAACGACCGGGTGCTGCCGTTAGTTGCTAACGACTTGATGTGGGCCCTGAGCCTGCCGGAGGGGGCTGATCGCGACCACGAGTATTGTAATCCATCTATCAACGGCGGTGATGGAAGGATCGGACGGTTGCCGTGGTGTTTGGTTAGCGGGTACGGCGGCGACCCGCTGGTGGATAGGCAGAAGGAGCTCGCGGCATTGTTGGAGTCACGCGGGGTGCACGTGACGGCCCGGTTTGAGGAGGATGGTTTTCATGGTGCGGAATTTGACCCCAACAAGGCCGAGGCTTTCTATGAGATTGTTAAGGAATTTATCGGCTCTTGTTGTGCATACGTCGGCGATGATGTTGGCGTTGCGAAATCGACCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

345

Amino Acids

37.42

Weight (kDa)

5.35

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 81 - 193 1.1e-13 BD-FAE
Abhydrolase_3 PF07859 89 - 309 1.7e-53 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 441
AccI GTMKAC 1 cut(s) 562
AccII CGCG 6 cut(s) 533, 557, 567, 741, 860, 879
AclWI GGATC 4 cut(s) 125, 531, 544, 794
AcoI YGGCCR 1 cut(s) 432
AcsI RAATTY 2 cut(s) 929, 974
AcvI CACGTG 1 cut(s) 889
AcyI GRCGYC 1 cut(s) 423
AfaI GTAC 2 cut(s) 380, 821
AfiI CCNNNNNNNGG 7 cut(s) 160, 441, 660, 727, 838, 904, 943
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 3 cut(s) 440, 453, 618
AluBI AGCT 1 cut(s) 856
AluI AGCT 1 cut(s) 856
Alw21I GWGCWC 3 cut(s) 399, 858, 888
Alw26I GTCTC 1 cut(s) 389
Alw44I GTGCAC 1 cut(s) 884
AlwI GGATC 4 cut(s) 125, 531, 544, 794
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 5 cut(s) 432, 456, 711, 894, 945
ApaI GGGCCC 1 cut(s) 715
ApaLI GTGCAC 1 cut(s) 884
ApeKI GCWGC 3 cut(s) 300, 330, 682
ApoI RAATTY 2 cut(s) 929, 974
AspLEI GCGC 3 cut(s) 305, 533, 569
AspS9I GGNCC 5 cut(s) 580, 645, 711, 712, 895
AsuC2I CCSGG 2 cut(s) 677, 898
AsuHPI GGTGA 3 cut(s) 64, 430, 788
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 2 cut(s) 580, 645
BaeGI GKGCMC 2 cut(s) 715, 888
BamHI GGATCC 1 cut(s) 536
BanII GRGCYC 2 cut(s) 715, 858
BauI CACGAG 1 cut(s) 746
BbrPI CACGTG 1 cut(s) 889
Bbv12I GWGCWC 3 cut(s) 399, 858, 888
BbvI GCAGC 3 cut(s) 312, 317, 669
BccI CCATC 6 cut(s) 56, 359, 443, 769, 773, 905
BceAI ACGGC 7 cut(s) 295, 410, 670, 784, 787, 838, 909
BciT130I CCWGG 3 cut(s) 442, 455, 620
BcnI CCSGG 2 cut(s) 677, 898
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 2 cut(s) 362, 528
BfmI CTRYAG 1 cut(s) 298
BfoI RGCGCY 1 cut(s) 306
BglI GCCNNNNNGGC 1 cut(s) 431
BisI GCNGC 9 cut(s) 283, 286, 301, 306, 331, 411, 683, 826, 861
BlsI GCNGC 9 cut(s) 284, 287, 302, 307, 332, 412, 684, 827, 862
Bme1390I CCNGG 5 cut(s) 442, 455, 620, 677, 898
Bme18I GGWCC 2 cut(s) 580, 645
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 5 cut(s) 580, 645, 711, 712, 895
BmiI GGNNCC 2 cut(s) 538, 713
BmrFI CCNGG 5 cut(s) 442, 455, 620, 677, 898
Bpu10I CCTNAGC 1 cut(s) 716
BpuMI CCSGG 2 cut(s) 677, 898
BsaAI YACGTR 1 cut(s) 889
BsaBI GATNNNNATC 2 cut(s) 129, 596
BsaHI GRCGYC 1 cut(s) 423
BsaJI CCNNGG 5 cut(s) 159, 277, 601, 800, 948
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 7 cut(s) 160, 441, 660, 727, 838, 904, 943
Bse8I GATNNNNATC 2 cut(s) 129, 596
BseBI CCWGG 3 cut(s) 442, 455, 620
BseDI CCNNGG 5 cut(s) 159, 277, 601, 800, 948
BseGI GGATG 5 cut(s) 140, 165, 273, 351, 916
BseJI GATNNNNATC 2 cut(s) 129, 596
BseLI CCNNNNNNNGG 7 cut(s) 160, 441, 660, 727, 838, 904, 943
BseMII CTCAG 2 cut(s) 326, 707
BseRI GAGGAG 3 cut(s) 254, 451, 920
BseSI GKGCMC 2 cut(s) 715, 888
BseXI GCAGC 3 cut(s) 312, 317, 669
BseYI CCCAGC 1 cut(s) 355
Bsh1236I CGCG 6 cut(s) 533, 557, 567, 741, 860, 879
Bsh1285I CGRYCG 2 cut(s) 676, 1032
BshFI GGCC 5 cut(s) 434, 458, 713, 896, 947
BsiEI CGRYCG 2 cut(s) 676, 1032
BsiHKAI GWGCWC 3 cut(s) 399, 858, 888
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 3 cut(s) 676, 725, 898
BslI CCNNNNNNNGG 7 cut(s) 160, 441, 660, 727, 838, 904, 943
BsmAI GTCTC 1 cut(s) 389
BsmBI CGTCTC 1 cut(s) 389
BsnI GGCC 5 cut(s) 434, 458, 713, 896, 947
BsoBI CYCGRG 1 cut(s) 392
Bsp120I GGGCCC 1 cut(s) 711
Bsp1286I GDGCHC 4 cut(s) 399, 715, 858, 888
Bsp143I GATC 7 cut(s) 7, 130, 536, 591, 657, 736, 786
Bsp68I TCGCGA 1 cut(s) 741
BspANI GGCC 5 cut(s) 434, 458, 713, 896, 947
BspCNI CTCAG 2 cut(s) 325, 708
BspFNI CGCG 6 cut(s) 533, 557, 567, 741, 860, 879
BspLI GGNNCC 2 cut(s) 538, 713
BspMAI CTGCAG 1 cut(s) 302
BspPI GGATC 4 cut(s) 125, 531, 544, 794
BssECI CCNNGG 5 cut(s) 159, 277, 601, 800, 948
BssMI GATC 7 cut(s) 7, 130, 536, 591, 657, 736, 786
BssNI GRCGYC 1 cut(s) 423
BssSI CACGAG 1 cut(s) 746
BssT1I CCWWGG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 746
Bst2UI CCWGG 3 cut(s) 442, 455, 620
Bst4CI ACNGT 3 cut(s) 383, 795, 1033
Bst6I CTCTTC 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 423
BstBAI YACGTR 1 cut(s) 889
BstC8I GCNNGC 2 cut(s) 722, 858
BstDEI CTNAG 2 cut(s) 312, 716
BstDSI CCRYGG 2 cut(s) 277, 800
BstENI CCTNNNNNAGG 2 cut(s) 158, 725
BstF5I GGATG 5 cut(s) 140, 165, 273, 351, 916
BstFNI CGCG 6 cut(s) 533, 557, 567, 741, 860, 879
BstH2I RGCGCY 1 cut(s) 306
BstHHI GCGC 3 cut(s) 305, 533, 569
BstKTI GATC 7 cut(s) 10, 133, 539, 594, 660, 739, 789
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 7 cut(s) 7, 130, 536, 591, 657, 736, 786
BstMCI CGRYCG 2 cut(s) 676, 1032
BstMWI GCNNNNNNNGC 7 cut(s) 336, 431, 464, 554, 613, 822, 853
BstNI CCWGG 3 cut(s) 442, 455, 620
BstSCI CCNGG 5 cut(s) 440, 453, 618, 675, 896
BstSFI CTRYAG 1 cut(s) 298
BstSLI GKGCMC 2 cut(s) 715, 888
BstUI CGCG 6 cut(s) 533, 557, 567, 741, 860, 879
BstV1I GCAGC 3 cut(s) 312, 317, 669
BstX2I RGATCY 1 cut(s) 536
BstYI RGATCY 1 cut(s) 536
BsuRI GGCC 5 cut(s) 434, 458, 713, 896, 947
BtgI CCRYGG 2 cut(s) 277, 800
BtgZI GCGATG 1 cut(s) 1020
BtsCI GGATG 5 cut(s) 140, 165, 273, 351, 916
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 1 cut(s) 325
BtuMI TCGCGA 1 cut(s) 741
Cac8I GCNNGC 2 cut(s) 722, 858
CfoI GCGC 3 cut(s) 305, 533, 569
Cfr13I GGNCC 5 cut(s) 580, 645, 711, 712, 895
CseI GACGC 1 cut(s) 431
Csp6I GTAC 2 cut(s) 379, 820
CspCI CAANNNNNGTGG 2 cut(s) 734, 769
CviAII CATG 2 cut(s) 520, 920
CviQI GTAC 2 cut(s) 379, 820
DdeI CTNAG 2 cut(s) 312, 716
DpnI GATC 7 cut(s) 9, 132, 538, 593, 659, 738, 788
DpnII GATC 7 cut(s) 7, 130, 536, 591, 657, 736, 786
EaeI YGGCCR 1 cut(s) 432
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
EciI GGCGGA 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 856
Eco130I CCWWGG 1 cut(s) 159
Eco147I AGGCCT 1 cut(s) 458
Eco24I GRGCYC 2 cut(s) 715, 858
Eco47I GGWCC 2 cut(s) 580, 645
Eco53kI GAGCTC 1 cut(s) 856
Eco72I CACGTG 1 cut(s) 889
Eco88I CYCGRG 1 cut(s) 392
EcoICRI GAGCTC 1 cut(s) 856
EcoNI CCTNNNNNAGG 2 cut(s) 158, 725
EcoO109I RGGNCCY 1 cut(s) 712
EcoRII CCWGG 3 cut(s) 440, 453, 618
EcoT14I CCWWGG 1 cut(s) 159
EcoT38I GRGCYC 2 cut(s) 715, 858
ErhI CCWWGG 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 389
FaeI CATG 2 cut(s) 523, 923
FaiI YATR 8 cut(s) 252, 521, 578, 627, 921, 960, 997, 1036
FatI CATG 2 cut(s) 519, 919
FauI CCCGC 9 cut(s) 83, 127, 415, 526, 550, 626, 809, 840, 872
FblI GTMKAC 1 cut(s) 562
Fnu4HI GCNGC 9 cut(s) 283, 286, 301, 306, 331, 411, 683, 826, 861
FokI GGATG 5 cut(s) 127, 152, 260, 338, 923
FriOI GRGCYC 2 cut(s) 715, 858
Fsp4HI GCNGC 9 cut(s) 283, 286, 301, 306, 331, 411, 683, 826, 861
FspBI CTAG 2 cut(s) 362, 528
GlaI GCGC 3 cut(s) 304, 532, 568
GluI GCNGC 9 cut(s) 283, 286, 301, 306, 331, 411, 683, 826, 861
GsaI CCCAGC 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 306
HaeIII GGCC 5 cut(s) 434, 458, 713, 896, 947
HapII CCGG 3 cut(s) 676, 725, 898
HgaI GACGC 1 cut(s) 431
HhaI GCGC 3 cut(s) 305, 533, 569
Hin1I GRCGYC 1 cut(s) 423
Hin1II CATG 2 cut(s) 523, 923
Hin6I GCGC 3 cut(s) 303, 531, 567
HinP1I GCGC 3 cut(s) 303, 531, 567
HincII GTYRAC 2 cut(s) 640, 670
HindII GTYRAC 2 cut(s) 640, 670
HinfI GANTC 5 cut(s) 110, 125, 476, 650, 872
HpaII CCGG 3 cut(s) 676, 725, 898
HphI GGTGA 3 cut(s) 64, 430, 788
Hpy166II GTNNAC 4 cut(s) 563, 640, 670, 886
Hpy188I TCNGA 5 cut(s) 130, 574, 602, 655, 791
Hpy188III TCNNGA 2 cut(s) 173, 740
Hpy8I GTNNAC 4 cut(s) 563, 640, 670, 886
Hpy99I CGWCG 5 cut(s) 377, 422, 425, 473, 1004
HpyAV CCTTC 2 cut(s) 777, 844
HpyCH4III ACNGT 3 cut(s) 383, 795, 1033
HpyCH4IV ACGT 2 cut(s) 888, 999
HpyCH4V TGCA 4 cut(s) 300, 616, 886, 995
HpyF10VI GCNNNNNNNGC 7 cut(s) 336, 431, 464, 554, 613, 822, 853
HpyF3I CTNAG 2 cut(s) 312, 716
HpySE526I ACGT 2 cut(s) 888, 999
Hsp92I GRCGYC 1 cut(s) 423
Hsp92II CATG 2 cut(s) 523, 923
HspAI GCGC 3 cut(s) 303, 531, 567
Kzo9I GATC 7 cut(s) 7, 130, 536, 591, 657, 736, 786
LmnI GCTCC 1 cut(s) 853
Lsp1109I GCAGC 3 cut(s) 312, 317, 669
MaeI CTAG 2 cut(s) 362, 528
MaeII ACGT 2 cut(s) 888, 999
MaeIII GTNAC 2 cut(s) 873, 889
MalI GATC 7 cut(s) 9, 132, 538, 593, 659, 738, 788
MboI GATC 7 cut(s) 7, 130, 536, 591, 657, 736, 786
MboII GAAGA 1 cut(s) 196
MflI RGATCY 1 cut(s) 536
MhlI GDGCHC 4 cut(s) 399, 715, 858, 888
MluCI AATT 2 cut(s) 929, 974
MlyI GAGTC 2 cut(s) 119, 881
MmeI TCCRAC 1 cut(s) 849
MseI TTAA 1 cut(s) 969
MspA1I CMGCKG 1 cut(s) 835
MspI CCGG 3 cut(s) 676, 725, 898
MspR9I CCNGG 5 cut(s) 442, 455, 620, 677, 898
MvaI CCWGG 3 cut(s) 442, 455, 620
MvnI CGCG 6 cut(s) 533, 557, 567, 741, 860, 879
MwoI GCNNNNNNNGC 7 cut(s) 336, 431, 464, 554, 613, 822, 853
NciI CCSGG 2 cut(s) 677, 898
NdeII GATC 7 cut(s) 7, 130, 536, 591, 657, 736, 786
NlaIII CATG 2 cut(s) 523, 923
NlaIV GGNNCC 2 cut(s) 538, 713
NmeAIII GCCGAG 1 cut(s) 973
NmuCI GTSAC 2 cut(s) 873, 889
NruI TCGCGA 1 cut(s) 741
PceI AGGCCT 1 cut(s) 458
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PfeI GAWTC 3 cut(s) 125, 476, 650
PflMI CCANNNNNTGG 1 cut(s) 441
PkrI GCNGC 9 cut(s) 284, 287, 302, 307, 332, 412, 684, 827, 862
PleI GAGTC 2 cut(s) 118, 880
PmaCI CACGTG 1 cut(s) 889
PmlI CACGTG 1 cut(s) 889
PpsI GAGTC 2 cut(s) 118, 880
Ppu21I YACGTR 1 cut(s) 889
Psp124BI GAGCTC 1 cut(s) 858
Psp6I CCWGG 3 cut(s) 440, 453, 618
PspCI CACGTG 1 cut(s) 889
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 3 cut(s) 440, 453, 618
PspN4I GGNNCC 2 cut(s) 538, 713
PspOMI GGGCCC 1 cut(s) 711
PspPI GGNCC 5 cut(s) 580, 645, 711, 712, 895
PstI CTGCAG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 536
RruI TCGCGA 1 cut(s) 741
RsaI GTAC 2 cut(s) 380, 821
RsaNI GTAC 2 cut(s) 379, 820
SacI GAGCTC 1 cut(s) 858
SaqAI TTAA 1 cut(s) 969
SatI GCNGC 9 cut(s) 283, 286, 301, 306, 331, 411, 683, 826, 861
Sau3AI GATC 7 cut(s) 7, 130, 536, 591, 657, 736, 786
Sau96I GGNCC 5 cut(s) 580, 645, 711, 712, 895
SchI GAGTC 2 cut(s) 119, 881
ScrFI CCNGG 5 cut(s) 442, 455, 620, 677, 898
SduI GDGCHC 4 cut(s) 399, 715, 858, 888
SetI ASST 8 cut(s) 194, 258, 443, 585, 665, 858, 891, 1002
SfcI CTRYAG 1 cut(s) 298
SinI GGWCC 2 cut(s) 580, 645
Sse9I AATT 2 cut(s) 929, 974
SseBI AGGCCT 1 cut(s) 458
SspMI CTAG 2 cut(s) 362, 528
SstI GAGCTC 1 cut(s) 858
StuI AGGCCT 1 cut(s) 458
StyD4I CCNGG 5 cut(s) 440, 453, 618, 675, 896
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 3 cut(s) 383, 795, 1033
TaiI ACGT 2 cut(s) 891, 1002
TaqI TCGA 4 cut(s) 24, 174, 375, 1028
TaqII GACCGA 1 cut(s) 662
TasI AATT 2 cut(s) 929, 974
TauI GCSGC 6 cut(s) 285, 288, 308, 413, 828, 863
TfiI GAWTC 3 cut(s) 125, 476, 650
Tru1I TTAA 1 cut(s) 969
Tru9I TTAA 1 cut(s) 969
TscAI CASTG 1 cut(s) 332
TseFI GTSAC 2 cut(s) 873, 889
TseI GCWGC 3 cut(s) 300, 330, 682
Tsp45I GTSAC 2 cut(s) 873, 889
TspDTI ATGAA 3 cut(s) 280, 505, 908
TspGWI ACGGA 3 cut(s) 361, 484, 486
TspRI CASTG 1 cut(s) 332
Van91I CCANNNNNTGG 1 cut(s) 441
VneI GTGCAC 1 cut(s) 884
VpaK11BI GGWCC 2 cut(s) 580, 645
XagI CCTNNNNNAGG 2 cut(s) 158, 725
XapI RAATTY 2 cut(s) 929, 974
XmiI GTMKAC 1 cut(s) 562
XspI CTAG 2 cut(s) 362, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.