Prupe.2G174700_v2.0.a1

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000733
Physical Location & Seq
Forward (+)
22065238 .. 22067169
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G174700.1

Sequence Viewer

Length: 1428 bp
ATGGGGGAAAGCCTTCGTGTAGTGATGCTTCCATGGTCTGCCTTTGGCCACACGATGCCTTTTTTCCAGCTTTCCATGGCCTTGGCAAAAGCCGAAGTTCATGTCTTCTACATCTCCACCCCAAAAAACATCCAAAGGCTCCCCAAAATCTCACCTGATTTGCAACCCTTTATACATCTAGTCTCCATCCCATTTCCTGCTTTGGCTTCTGGGTTCTTGCCAGAAGGTGCTGAGGCAACTGTGGACATACCCTTTGAAAAAATGGACAACTTCAAGATTGCATATGACCTCCTGCAACAACCCATCAAGCAGTTCATTGGGGATCAATTACCTGATTGGATAATAGTTGATTTTTCTGCTCACTGGGCGGTAGAGATTGGCAAGGAGTTTGGTGTTCCACTTGTCTACTTCTCTGCTTTCTGTGCAGCTACATGTGTTTTCCTTACTTCATTAGAAAATATCTCCAAAGCTAATACAGATCATGATGTTCTGTCATCACCAGAAAGCCTCACATCACCGAGGGATTTCGGGACTTTTCGGTCAACTATAGCATATCGGAAGCATGAGGCAGTTGATATATACGCAGGCTTTTATGAACTAAATGATTCTGGGATAAGTGATTCTGACAGGCATAACAAGATTTTATTAGCATGTCAAGCTGTAGCAGTGCGCAGTTGCAATGAGTTTGAAGGAGAATACTTAGAGGCATACAAGAACAAAACTGGACAGCTTGTGATTCCCACAGGTTTGCTTCCACCAGAGCAACCATCTGCCAAAAGAGAAATCAGTTCTGATGGGTCACCAAACAATGTGATATTTGACTGGCTTGATAAACAAAAACCCAAGTCAGTTGTGTTTGTTGGGTTTGGATCTGAGTGTAAGCTGAGCAAGGAACAAGTCTTTGAGATTGCTCATGGGCTTGGGCTATCAGAGCTTCCATTTCTCTGGGCACTTAGAAAACCCAACTGGGCTGACAGTGAAGCTGATGCTTTGCCTCCTGGTTTTGTTGAGCGCACATCCGAGAAAGGGCTTGTTTGCTTGGGATGGGTGCCCCAGATGGAAATTTTGGGGCACCCATCAGTTGGGGGGTCTCTGTTTCACTCTGGATGGGGCTCTGTAATTGAAACTCTGCAATTTGGGCATGTTCTTGTTGTTTTGCCATTCATTATTGATCAGCCTTTGAATGCAAGGCTTCTGGTGGAGAAGGATCTGGCTGTTGAAGTAAAACGCACAGAAGATGGGTCGTTTTGCAAAGATGATATAGCCAAAACACTGAGACATGCAATGGTGGCAGAGGAAGGAGAGAAACTAAGAAGCAATGCAAGGAAAGCTGCCAAAGTTTTTGGAGATCACAAGCTGCACCAAGACCACTACCTTGGCCAATTTGTCCATTACCTTAAAAATAATGTCCCAAGAAGGTCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

476

Amino Acids

52.99

Weight (kDa)

5.75

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 538
Acc16I TGCGCA 1 cut(s) 671
AccB1I GGYRCC 2 cut(s) 1048, 1071
AccB7I CCANNNNNTGG 1 cut(s) 1082
AccI GTMKAC 1 cut(s) 405
AciI CCGC 1 cut(s) 368
AclWI GGATC 3 cut(s) 330, 877, 1215
AcoI YGGCCR 2 cut(s) 46, 1378
AcsI RAATTY 1 cut(s) 1062
AfiI CCNNNNNNNGG 2 cut(s) 1026, 1082
AflIII ACRYGT 1 cut(s) 431
AgsI TTSAA 6 cut(s) 257, 274, 689, 1124, 1183, 1220
AjnI CCWGG 1 cut(s) 997
Alw26I GTCTC 3 cut(s) 187, 1095, 1270
AlwI GGATC 3 cut(s) 330, 877, 1215
AoxI GGCC 3 cut(s) 46, 78, 1378
ApeKI GCWGC 3 cut(s) 425, 1331, 1357
ApoI RAATTY 1 cut(s) 1062
ArsI GACNNNNNNTTYG 4 cut(s) 87, 119, 236, 268
Asp700I GAANNNNTTC 1 cut(s) 12
AspLEI GCGC 2 cut(s) 672, 1014
AsuHPI GGTGA 4 cut(s) 144, 489, 507, 792
BaeGI GKGCMC 3 cut(s) 952, 1053, 1074
BalI TGGCCA 2 cut(s) 48, 1380
BanI GGYRCC 2 cut(s) 1048, 1071
BanII GRGCYC 1 cut(s) 1115
BarI GAAGNNNNNNTAC 2 cut(s) 12, 44
BbsI GAAGAC 1 cut(s) 97
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 3 cut(s) 437, 1318, 1344
BccI CCATC 9 cut(s) 194, 311, 775, 788, 1038, 1051, 1084, 1101, 1232
BciT130I CCWGG 1 cut(s) 999
BclI TGATCA 1 cut(s) 1171
BcoDI GTCTC 3 cut(s) 187, 1095, 1270
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 2 cut(s) 546, 660
BisI GCNGC 3 cut(s) 426, 1332, 1358
BlpI GCTNAGC 1 cut(s) 884
BlsI GCNGC 3 cut(s) 427, 1333, 1359
Bme1390I CCNGG 1 cut(s) 999
BmiI GGNNCC 3 cut(s) 140, 1050, 1073
BmrFI CCNGG 1 cut(s) 999
BmrI ACTGGG 2 cut(s) 373, 976
BmsI GCATC 3 cut(s) 15, 45, 976
BmuI ACTGGG 2 cut(s) 373, 976
BpiI GAAGAC 1 cut(s) 97
Bpu10I CCTNAGC 1 cut(s) 231
Bpu1102I GCTNAGC 1 cut(s) 884
BsaI GGTCTC 1 cut(s) 1095
BsaJI CCNNGG 5 cut(s) 32, 75, 81, 518, 1375
Bsc4I CCNNNNNNNGG 2 cut(s) 1026, 1082
Bse1I ACTGG 4 cut(s) 368, 727, 827, 971
Bse3DI GCAATG 3 cut(s) 685, 1290, 1324
BseBI CCWGG 1 cut(s) 999
BseDI CCNNGG 5 cut(s) 32, 75, 81, 518, 1375
BseGI GGATG 5 cut(s) 129, 186, 1016, 1049, 1112
BseLI CCNNNNNNNGG 2 cut(s) 1026, 1082
BseMI GCAATG 3 cut(s) 685, 1290, 1324
BseMII CTCAG 4 cut(s) 222, 864, 875, 1265
BseNI ACTGG 4 cut(s) 368, 727, 827, 971
BseSI GKGCMC 3 cut(s) 952, 1053, 1074
BseXI GCAGC 3 cut(s) 437, 1318, 1344
BsgI GTGCAG 2 cut(s) 444, 1343
BshFI GGCC 3 cut(s) 48, 80, 1380
BshNI GGYRCC 2 cut(s) 1048, 1071
BslFI GGGAC 2 cut(s) 544, 1394
BslI CCNNNNNNNGG 2 cut(s) 1026, 1082
BsmAI GTCTC 3 cut(s) 187, 1095, 1270
BsmFI GGGAC 2 cut(s) 544, 1394
BsmI GAATGC 1 cut(s) 1189
BsnI GGCC 3 cut(s) 48, 80, 1380
Bso31I GGTCTC 1 cut(s) 1095
Bsp1286I GDGCHC 4 cut(s) 952, 1053, 1074, 1115
Bsp143I GATC 6 cut(s) 322, 478, 869, 1171, 1207, 1348
Bsp1720I GCTNAGC 1 cut(s) 884
Bsp19I CCATGG 2 cut(s) 32, 75
BspACI CCGC 1 cut(s) 368
BspANI GGCC 3 cut(s) 48, 80, 1380
BspCNI CTCAG 4 cut(s) 223, 865, 876, 1266
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 3 cut(s) 140, 1050, 1073
BspPI GGATC 3 cut(s) 330, 877, 1215
BspT107I GGYRCC 2 cut(s) 1048, 1071
BspTNI GGTCTC 1 cut(s) 1095
BsrDI GCAATG 3 cut(s) 685, 1290, 1324
BsrI ACTGG 4 cut(s) 368, 727, 827, 971
BssECI CCNNGG 5 cut(s) 32, 75, 81, 518, 1375
BssMI GATC 6 cut(s) 322, 478, 869, 1171, 1207, 1348
BssT1I CCWWGG 4 cut(s) 32, 75, 81, 1375
Bst2UI CCWGG 1 cut(s) 999
Bst4CI ACNGT 2 cut(s) 241, 977
BstC8I GCNNGC 1 cut(s) 586
BstDEI CTNAG 7 cut(s) 231, 700, 873, 884, 953, 1274, 1310
BstDSI CCRYGG 2 cut(s) 32, 75
BstEII GGTNACC 1 cut(s) 798
BstF5I GGATG 5 cut(s) 129, 186, 1016, 1049, 1112
BstHHI GCGC 2 cut(s) 672, 1014
BstKTI GATC 6 cut(s) 325, 481, 872, 1174, 1210, 1351
BstMAI GTCTC 3 cut(s) 187, 1095, 1270
BstMBI GATC 6 cut(s) 322, 478, 869, 1171, 1207, 1348
BstMWI GCNNNNNNNGC 7 cut(s) 365, 422, 656, 931, 1138, 1289, 1328
BstNI CCWGG 1 cut(s) 999
BstNSI RCATGY 4 cut(s) 435, 654, 1145, 1283
BstPI GGTNACC 1 cut(s) 798
BstSCI CCNGG 1 cut(s) 997
BstSFI CTRYAG 2 cut(s) 546, 660
BstSLI GKGCMC 3 cut(s) 952, 1053, 1074
BstV1I GCAGC 3 cut(s) 437, 1318, 1344
BstV2I GAAGAC 1 cut(s) 97
BstX2I RGATCY 2 cut(s) 869, 1207
BstXI CCANNNNNNTGG 3 cut(s) 82, 945, 1376
BstYI RGATCY 2 cut(s) 869, 1207
BsuRI GGCC 3 cut(s) 48, 80, 1380
BtgI CCRYGG 2 cut(s) 32, 75
BtsCI GGATG 5 cut(s) 129, 186, 1016, 1049, 1112
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 4 cut(s) 361, 672, 982, 1271
Cac8I GCNNGC 1 cut(s) 586
CciI TCATGA 1 cut(s) 481
CfoI GCGC 2 cut(s) 672, 1014
DdeI CTNAG 7 cut(s) 231, 700, 873, 884, 953, 1274, 1310
DpnI GATC 6 cut(s) 324, 480, 871, 1173, 1209, 1350
DpnII GATC 6 cut(s) 322, 478, 869, 1171, 1207, 1348
DrdI GACNNNNNNGTC 1 cut(s) 538
DseDI GACNNNNNNGTC 1 cut(s) 538
EaeI YGGCCR 2 cut(s) 46, 1378
Eco130I CCWWGG 4 cut(s) 32, 75, 81, 1375
Eco24I GRGCYC 1 cut(s) 1115
Eco31I GGTCTC 1 cut(s) 1095
Eco91I GGTNACC 1 cut(s) 798
EcoO65I GGTNACC 1 cut(s) 798
EcoRII CCWGG 1 cut(s) 997
EcoT14I CCWWGG 4 cut(s) 32, 75, 81, 1375
EcoT38I GRGCYC 1 cut(s) 1115
ErhI CCWWGG 4 cut(s) 32, 75, 81, 1375
FaqI GGGAC 2 cut(s) 544, 1394
FauNDI CATATG 1 cut(s) 283
FbaI TGATCA 1 cut(s) 1171
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 3 cut(s) 426, 1332, 1358
FokI GGATG 5 cut(s) 116, 173, 1003, 1056, 1119
FriOI GRGCYC 1 cut(s) 1115
Fsp4HI GCNGC 3 cut(s) 426, 1332, 1358
FspBI CTAG 1 cut(s) 179
FspI TGCGCA 1 cut(s) 671
GlaI GCGC 2 cut(s) 671, 1013
GluI GCNGC 3 cut(s) 426, 1332, 1358
HaeIII GGCC 3 cut(s) 48, 80, 1380
HhaI GCGC 2 cut(s) 672, 1014
Hin6I GCGC 2 cut(s) 670, 1012
HinP1I GCGC 2 cut(s) 670, 1012
HincII GTYRAC 1 cut(s) 543
HindII GTYRAC 1 cut(s) 543
HinfI GANTC 3 cut(s) 605, 620, 736
HphI GGTGA 4 cut(s) 144, 489, 507, 792
Hpy166II GTNNAC 3 cut(s) 244, 406, 543
Hpy188I TCNGA 6 cut(s) 558, 625, 793, 874, 931, 1021
Hpy188III TCNNGA 4 cut(s) 274, 482, 529, 1104
Hpy8I GTNNAC 3 cut(s) 244, 406, 543
HpyAV CCTTC 6 cut(s) 23, 218, 683, 1198, 1292, 1410
HpyCH4III ACNGT 2 cut(s) 241, 977
HpyF10VI GCNNNNNNNGC 7 cut(s) 365, 422, 656, 931, 1138, 1289, 1328
HpyF3I CTNAG 7 cut(s) 231, 700, 873, 884, 953, 1274, 1310
HspAI GCGC 2 cut(s) 670, 1012
Ksp22I TGATCA 1 cut(s) 1171
Kzo9I GATC 6 cut(s) 322, 478, 869, 1171, 1207, 1348
LmnI GCTCC 1 cut(s) 144
Lsp1109I GCAGC 3 cut(s) 437, 1318, 1344
LweI GCATC 3 cut(s) 15, 45, 976
MaeI CTAG 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 798
MalI GATC 6 cut(s) 324, 480, 871, 1173, 1209, 1350
MboI GATC 6 cut(s) 322, 478, 869, 1171, 1207, 1348
MboII GAAGA 2 cut(s) 97, 1247
MflI RGATCY 2 cut(s) 869, 1207
MhlI GDGCHC 4 cut(s) 952, 1053, 1074, 1115
MlsI TGGCCA 2 cut(s) 48, 1380
MluCI AATT 5 cut(s) 326, 1062, 1119, 1133, 1382
MluNI TGGCCA 2 cut(s) 48, 1380
MnlI CCTC 8 cut(s) 226, 299, 513, 518, 559, 697, 1005, 1288
Mox20I TGGCCA 2 cut(s) 48, 1380
MroXI GAANNNNTTC 1 cut(s) 12
MscI TGGCCA 2 cut(s) 48, 1380
MseI TTAA 1 cut(s) 1398
Msp20I TGGCCA 2 cut(s) 48, 1380
MspR9I CCNGG 1 cut(s) 999
Mva1269I GAATGC 1 cut(s) 1189
MvaI CCWGG 1 cut(s) 999
MwoI GCNNNNNNNGC 7 cut(s) 365, 422, 656, 931, 1138, 1289, 1328
NcoI CCATGG 2 cut(s) 32, 75
NdeI CATATG 1 cut(s) 283
NdeII GATC 6 cut(s) 322, 478, 869, 1171, 1207, 1348
NlaIV GGNNCC 3 cut(s) 140, 1050, 1073
NmuCI GTSAC 1 cut(s) 798
NsbI TGCGCA 1 cut(s) 671
NspI RCATGY 4 cut(s) 435, 654, 1145, 1283
PagI TCATGA 1 cut(s) 481
PciI ACATGT 1 cut(s) 431
PctI GAATGC 1 cut(s) 1189
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 3 cut(s) 605, 620, 736
PflMI CCANNNNNTGG 1 cut(s) 1082
PkrI GCNGC 3 cut(s) 427, 1333, 1359
PscI ACATGT 1 cut(s) 431
Psp6I CCWGG 1 cut(s) 997
PspEI GGTNACC 1 cut(s) 798
PspGI CCWGG 1 cut(s) 997
PspN4I GGNNCC 3 cut(s) 140, 1050, 1073
PsuI RGATCY 2 cut(s) 869, 1207
SaqAI TTAA 1 cut(s) 1398
SatI GCNGC 3 cut(s) 426, 1332, 1358
Sau3AI GATC 6 cut(s) 322, 478, 869, 1171, 1207, 1348
ScrFI CCNGG 1 cut(s) 999
SduI GDGCHC 4 cut(s) 952, 1053, 1074, 1115
SfaNI GCATC 3 cut(s) 15, 45, 976
SfcI CTRYAG 2 cut(s) 546, 660
Sse9I AATT 5 cut(s) 326, 1062, 1119, 1133, 1382
SsiI CCGC 1 cut(s) 368
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 997
StyI CCWWGG 4 cut(s) 32, 75, 81, 1375
TaaI ACNGT 2 cut(s) 241, 977
TaqII GACCGA 1 cut(s) 528
TasI AATT 5 cut(s) 326, 1062, 1119, 1133, 1382
TfiI GAWTC 3 cut(s) 605, 620, 736
Tru1I TTAA 1 cut(s) 1398
Tru9I TTAA 1 cut(s) 1398
TscAI CASTG 4 cut(s) 368, 672, 982, 1278
TseFI GTSAC 1 cut(s) 798
TseI GCWGC 3 cut(s) 425, 1331, 1357
Tsp45I GTSAC 1 cut(s) 798
TspDTI ATGAA 5 cut(s) 89, 304, 438, 609, 1153
TspRI CASTG 4 cut(s) 368, 672, 982, 1278
Van91I CCANNNNNTGG 1 cut(s) 1082
XapI RAATTY 1 cut(s) 1062
XceI RCATGY 4 cut(s) 435, 654, 1145, 1283
XmiI GTMKAC 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.