Rroxscaffold_4G00299080

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000733
Physical Location & Seq
Reverse (-)
19015249 .. 19017260
2012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00299080.1

Sequence Viewer

Length: 411 bp
ATGGGATGGGTGCCACAAATCGAAATTCTGGGGCACCCATCAGTCGGGGGTTCTCTGTTTCATTCTGGATGGGGTTCTGTGATTGAAACTCTGCAATTTGGGCATTGCCTTGTTGTGTTACCCTTAATTGTTGATCAGCCTCTGAATGCAAGGCTTCTGGTGGAGAAAGGTCTGGCTGCCGAAGTGAAACGCAACGAAGATGGGTCGTTTACTGCAGACGACATAGCCAAAACACTGAGGCTAGCAATGGTGGAAGAGGAAGGAGAGCACCTGAGAATCAATGCAAGGAAAGCTGCTTCTGTTTTTGGAGATGAGAAGCTGCACCAAGACCACTATCTTGGTGCATTTGTTGATCATCTCAAGAATAATGGTAGAAAAGGTCTTCTAGACAAGAATGATGACCCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

136

Amino Acids

14.96

Weight (kDa)

5.57

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 2 - 83 2.4e-13 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 10, 33
AcsI RAATTY 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 86
AluBI AGCT 2 cut(s) 293, 319
AluI AGCT 2 cut(s) 293, 319
Alw21I GWGCWC 1 cut(s) 270
AlwNI CAGNNNCTG 1 cut(s) 142
ApeKI GCWGC 3 cut(s) 176, 293, 319
ApoI RAATTY 1 cut(s) 24
AsuNHI GCTAGC 1 cut(s) 241
BaeGI GKGCMC 1 cut(s) 36
BanI GGYRCC 2 cut(s) 10, 33
BbsI GAAGAC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 3 cut(s) 163, 280, 306
BccI CCATC 3 cut(s) 46, 63, 194
BclI TGATCA 2 cut(s) 133, 352
BfaI CTAG 2 cut(s) 242, 386
BfmI CTRYAG 1 cut(s) 213
BisI GCNGC 3 cut(s) 177, 294, 320
BlsI GCNGC 3 cut(s) 178, 295, 321
BmiI GGNNCC 2 cut(s) 12, 35
BmtI GCTAGC 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse3DI GCAATG 2 cut(s) 103, 252
BseGI GGATG 2 cut(s) 11, 74
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMI GCAATG 2 cut(s) 103, 252
BseMII CTCAG 2 cut(s) 227, 263
BseSI GKGCMC 1 cut(s) 36
BseXI GCAGC 3 cut(s) 163, 280, 306
BsgI GTGCAG 1 cut(s) 305
BshNI GGYRCC 2 cut(s) 10, 33
BsiHKAI GWGCWC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 44
BsmI GAATGC 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 36, 270
Bsp143I GATC 2 cut(s) 133, 352
BspCNI CTCAG 2 cut(s) 228, 264
BspLI GGNNCC 2 cut(s) 12, 35
BspMAI CTGCAG 1 cut(s) 217
BspOI GCTAGC 1 cut(s) 245
BspT107I GGYRCC 2 cut(s) 10, 33
BsrDI GCAATG 2 cut(s) 103, 252
BssMI GATC 2 cut(s) 133, 352
Bst6I CTCTTC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 236, 272
BstF5I GGATG 2 cut(s) 11, 74
BstKTI GATC 2 cut(s) 136, 355
BstMBI GATC 2 cut(s) 133, 352
BstMWI GCNNNNNNNGC 2 cut(s) 100, 290
BstSFI CTRYAG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 36
BstV1I GCAGC 3 cut(s) 163, 280, 306
BstV2I GAAGAC 1 cut(s) 374
BstXI CCANNNNNNTGG 1 cut(s) 338
BtsCI GGATG 2 cut(s) 11, 74
BtsIMutI CAGTG 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 243
CaiI CAGNNNCTG 1 cut(s) 142
CviJI RGCY 7 cut(s) 139, 154, 176, 227, 241, 293, 319
CviKI_1 RGCY 7 cut(s) 139, 154, 176, 227, 241, 293, 319
DdeI CTNAG 2 cut(s) 236, 272
DpnI GATC 2 cut(s) 135, 354
DpnII GATC 2 cut(s) 133, 352
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
FaiI YATR 1 cut(s) 224
FbaI TGATCA 2 cut(s) 133, 352
Fnu4HI GCNGC 3 cut(s) 177, 294, 320
FokI GGATG 2 cut(s) 18, 81
Fsp4HI GCNGC 3 cut(s) 177, 294, 320
FspBI CTAG 2 cut(s) 242, 386
GluI GCNGC 3 cut(s) 177, 294, 320
HinfI GANTC 1 cut(s) 276
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 3 cut(s) 66, 361, 386
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 254
HpyCH4V TGCA 6 cut(s) 94, 149, 215, 284, 322, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 290
HpyF3I CTNAG 2 cut(s) 236, 272
Ksp22I TGATCA 2 cut(s) 133, 352
Kzo9I GATC 2 cut(s) 133, 352
LpnPI CCDG 5 cut(s) 14, 51, 143, 158, 284
Lsp1109I GCAGC 3 cut(s) 163, 280, 306
MaeI CTAG 2 cut(s) 242, 386
MaeIII GTNAC 1 cut(s) 117
MalI GATC 2 cut(s) 135, 354
MboI GATC 2 cut(s) 133, 352
MboII GAAGA 3 cut(s) 209, 266, 374
MhlI GDGCHC 2 cut(s) 36, 270
MluCI AATT 3 cut(s) 24, 95, 126
MnlI CCTC 3 cut(s) 150, 231, 250
MseI TTAA 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 151
MwoI GCNNNNNNNGC 2 cut(s) 100, 290
NdeII GATC 2 cut(s) 133, 352
NheI GCTAGC 1 cut(s) 241
NlaIV GGNNCC 2 cut(s) 12, 35
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 276
PkrI GCNGC 3 cut(s) 178, 295, 321
PspN4I GGNNCC 2 cut(s) 12, 35
PstI CTGCAG 1 cut(s) 217
PstNI CAGNNNCTG 1 cut(s) 142
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 3 cut(s) 177, 294, 320
Sau3AI GATC 2 cut(s) 133, 352
SduI GDGCHC 2 cut(s) 36, 270
SetI ASST 5 cut(s) 172, 273, 295, 321, 382
SfcI CTRYAG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 3 cut(s) 24, 95, 126
SspMI CTAG 2 cut(s) 242, 386
TaqI TCGA 1 cut(s) 21
TasI AATT 3 cut(s) 24, 95, 126
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 1 cut(s) 240
TseI GCWGC 3 cut(s) 176, 293, 319
TspDTI ATGAA 1 cut(s) 50
TspRI CASTG 1 cut(s) 240
XapI RAATTY 1 cut(s) 24
XbaI TCTAGA 1 cut(s) 385
XspI CTAG 2 cut(s) 242, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.