MD01G1068800.v1.1

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000733
Physical Location & Seq
Forward (+)
17283203 .. 17288871
5669 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1068800.v1.1.491

Sequence Viewer

Length: 1422 bp
ATGGCAAAAGATCTTAGAGTTGTGATGCTTCCATGGTCTTCCTTTGGCCACATTATCCCGTATTTCCAACTTTCCGTAGCCTTGGCAAAAGCTAAAGTTCATGTCTCCCTCATATCCACGCCAAAAAACATCCAAAAGCTCCCAAAATTCTCAACGGATTTACGATCCTTTATACATTTAGTCCCCATTCCATTTCCTCCATTGGATCCCGGCTTCTTGCCTGAAGGAGCTGAGGCCACAGTGGATGTACCCTTTGAAAAAACAGACAACTTGAAGATTGCATATGATCTGCTGCAGGAACCCATTAAGCAGTTCATTGGGGAGCAGCTGCCTGATTGGATTATATCTGACTATGCAGCTCATTGGGTGGTCGACATCGCCAAAGAGTATGGTATTCCAGTTGGCTATTTTTCTCCTTTCTGTATGGCTGGCAGTGCCTTCTTTGGCGGACCAGAAAATCTCTTGGGTGCAAACAGAAACCATGCTCTCCCAACACCGGAAAGCTTAACATCGCCACCGGATTGGGTTGCGTTTGCTTCAACGGTGGCGTTTCGAGAGTTTGAAGCGTTTTATGTGCCTCGAGGCTTTTTTGGAGCGAATGGAAGTGGGATAAGTGATTCTGCAAGACTTGCCAAGATTGTTTCCGGAAGTCAAGTTTTAGCCATTCGTTCTTGCGACGAGGTTGAAGGAGAATACTTGGAGGTTTACAAGAAACTTACTGGAAAGCCAGTGATGTCCACAGGTCTGCTTCTTCCTCCTGAGAAACCAACAAGAAGGGCAAAAGGGGAAATTTCCACTGATGATGGGATCTTTAAATGGCTTGATAAGCACGAAACCAGGTCAGTAGTGTTTGTAGGGTTTGGGAGTGAGTGTAAGTTGAGTAAAGAGCAAGTCTTTGAGATAGCCTATGGGCTGGAGCTATCAGAACTCCCCTTTCTTTGGGCACTCAGAAAACCCAGTTGGGCAAATAATGATGTTGATGCCCTGCCTGTAGGGTTTGTTGACCGTACATCAGAGAAATGGCTTGTTTGCTTGGGGTGGGTGCCCCAAATGGAAATCTTGGCACACCCATCAATTGGGGGTTCTTTGTTTCACTCTGGATGGGGATCTATAATTGAGACTCTTCAATTTGGGCATGTTCTTGTTGCTCTACCAATGGTCTTTGATCAGCCACTGAATGCAAGGCTTTTGGAGGACAGGGGTCTGGCTGTCGAAGTGAAACGCAGCCGAGATGGGTCATTTAGTAGAGATGAGATATCCAAAAAACTGAGGCATGCAATGGTGGAAGAGGAAGGAGAGAAGCTGAGATCCAATGCAAGGAAAGCTGCAGCTGTTTTTGGTGATCACAAGCTGCACCAAGACCACTACATTGGCCAATTTGTCAACTTTCTCAAGAATAATTGTACAAAGAGAACGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

474

Amino Acids

52.66

Weight (kDa)

6.25

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 279 - 408 4.3e-14 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 579
AccB1I GGYRCC 1 cut(s) 1042
AccB7I CCANNNNNTGG 1 cut(s) 1076
AccI GTMKAC 1 cut(s) 372
AccIII TCCGGA 1 cut(s) 644
AciI CCGC 1 cut(s) 447
AclWI GGATC 6 cut(s) 159, 200, 213, 815, 1114, 1302
AcoI YGGCCR 2 cut(s) 46, 1372
AcsI RAATTY 2 cut(s) 146, 789
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 3 cut(s) 249, 1009, 1405
AfiI CCNNNNNNNGG 4 cut(s) 496, 939, 1076, 1317
AgsI TTSAA 6 cut(s) 257, 274, 540, 563, 686, 1127
AjnI CCWGG 1 cut(s) 836
AjuI GAANNNNNNNTTGG 2 cut(s) 943, 975
Alw26I GTCTC 2 cut(s) 109, 1112
AlwI GGATC 6 cut(s) 159, 200, 213, 815, 1114, 1302
AlwNI CAGNNNCTG 1 cut(s) 1174
Ama87I CYCGRG 1 cut(s) 579
Aor13HI TCCGGA 1 cut(s) 644
AoxI GGCC 3 cut(s) 46, 234, 1372
ApeKI GCWGC 8 cut(s) 292, 325, 328, 356, 1224, 1325, 1328, 1351
ApoI RAATTY 2 cut(s) 146, 789
ArsI GACNNNNNNTTYG 1 cut(s) 1400
AspS9I GGNCC 1 cut(s) 449
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 1352
AvaI CYCGRG 1 cut(s) 579
AvaII GGWCC 1 cut(s) 449
BaeGI GKGCMC 2 cut(s) 946, 1047
BalI TGGCCA 2 cut(s) 48, 1374
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 1042
BbsI GAAGAC 1 cut(s) 30
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 8 cut(s) 279, 315, 337, 368, 1236, 1312, 1338, 1340
BccI CCATC 4 cut(s) 797, 1078, 1095, 1226
BciT130I CCWGG 1 cut(s) 838
BclI TGATCA 2 cut(s) 1165, 1342
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 2 cut(s) 109, 1112
BfmI CTRYAG 3 cut(s) 293, 990, 1326
BglII AGATCT 1 cut(s) 10
BisI GCNGC 8 cut(s) 293, 326, 329, 357, 1225, 1326, 1329, 1352
BlsI GCNGC 8 cut(s) 294, 327, 330, 358, 1226, 1327, 1330, 1353
Bme1390I CCNGG 2 cut(s) 210, 838
Bme18I GGWCC 1 cut(s) 449
BmeT110I CYCGRG 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 3 cut(s) 207, 300, 1044
BmrFI CCNGG 2 cut(s) 210, 838
BmrI ACTGGG 1 cut(s) 951
BmsI GCATC 2 cut(s) 15, 970
BmuI ACTGGG 1 cut(s) 951
BoxI GACNNNNGTC 1 cut(s) 1200
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 935
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 1376
BpuMI CCSGG 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 1105
BsaJI CCNNGG 2 cut(s) 32, 81
BsaWI WCCGGW 3 cut(s) 496, 517, 644
BsaXI ACNNNNNCTCC 2 cut(s) 856, 886
Bsc4I CCNNNNNNNGG 4 cut(s) 496, 939, 1076, 1317
Bse1I ACTGG 4 cut(s) 398, 724, 728, 957
Bse3DI GCAATG 1 cut(s) 1284
Bse8I GATNNNNATC 1 cut(s) 1105
BseAI TCCGGA 1 cut(s) 644
BseBI CCWGG 1 cut(s) 838
BseDI CCNNGG 2 cut(s) 32, 81
BseGI GGATG 3 cut(s) 129, 250, 1106
BseJI GATNNNNATC 1 cut(s) 1105
BseLI CCNNNNNNNGG 4 cut(s) 496, 939, 1076, 1317
BseMI GCAATG 1 cut(s) 1284
BseMII CTCAG 5 cut(s) 222, 750, 961, 1259, 1295
BseNI ACTGG 4 cut(s) 398, 724, 728, 957
BseSI GKGCMC 2 cut(s) 946, 1047
BseXI GCAGC 8 cut(s) 279, 315, 337, 368, 1236, 1312, 1338, 1340
BsgI GTGCAG 1 cut(s) 1337
BshFI GGCC 3 cut(s) 48, 236, 1374
BshNI GGYRCC 1 cut(s) 1042
BsiHKCI CYCGRG 1 cut(s) 579
BsiSI CCGG 4 cut(s) 210, 497, 518, 645
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 4 cut(s) 496, 939, 1076, 1317
BsmAI GTCTC 2 cut(s) 109, 1112
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 1183
BsnI GGCC 3 cut(s) 48, 236, 1374
BsoBI CYCGRG 1 cut(s) 579
Bsp1286I GDGCHC 2 cut(s) 946, 1047
Bsp13I TCCGGA 1 cut(s) 644
Bsp1407I TGTACA 1 cut(s) 1403
Bsp143I GATC 9 cut(s) 10, 164, 205, 286, 807, 1106, 1165, 1307, 1342
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 1 cut(s) 447
BspANI GGCC 3 cut(s) 48, 236, 1374
BspCNI CTCAG 5 cut(s) 223, 751, 960, 1260, 1296
BspEI TCCGGA 1 cut(s) 644
BspLI GGNNCC 3 cut(s) 207, 300, 1044
BspMAI CTGCAG 2 cut(s) 297, 1330
BspPI GGATC 6 cut(s) 159, 200, 213, 815, 1114, 1302
BspT107I GGYRCC 1 cut(s) 1042
BsrDI GCAATG 1 cut(s) 1284
BsrGI TGTACA 1 cut(s) 1403
BsrI ACTGG 4 cut(s) 398, 724, 728, 957
BssECI CCNNGG 2 cut(s) 32, 81
BssMI GATC 9 cut(s) 10, 164, 205, 286, 807, 1106, 1165, 1307, 1342
BssT1I CCWWGG 2 cut(s) 32, 81
Bst2UI CCWGG 1 cut(s) 838
Bst4CI ACNGT 3 cut(s) 241, 544, 1007
Bst6I CTCTTC 2 cut(s) 1128, 1281
BstAPI GCANNNNNTGC 1 cut(s) 629
BstAUI TGTACA 1 cut(s) 1403
BstC8I GCNNGC 2 cut(s) 430, 1275
BstDEI CTNAG 6 cut(s) 14, 231, 759, 947, 1268, 1304
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 3 cut(s) 129, 250, 1106
BstKTI GATC 9 cut(s) 13, 167, 208, 289, 810, 1109, 1168, 1310, 1345
BstMAI GTCTC 2 cut(s) 109, 1112
BstMBI GATC 9 cut(s) 10, 164, 205, 286, 807, 1106, 1165, 1307, 1342
BstMWI GCNNNNNNNGC 4 cut(s) 434, 629, 826, 1322
BstNI CCWGG 1 cut(s) 838
BstNSI RCATGY 2 cut(s) 1139, 1277
BstPAI GACNNNNGTC 1 cut(s) 1200
BstSCI CCNGG 2 cut(s) 208, 836
BstSFI CTRYAG 3 cut(s) 293, 990, 1326
BstSLI GKGCMC 2 cut(s) 946, 1047
BstV1I GCAGC 8 cut(s) 279, 315, 337, 368, 1236, 1312, 1338, 1340
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 5 cut(s) 10, 205, 807, 1106, 1307
BstXI CCANNNNNNTGG 2 cut(s) 522, 1370
BstYI RGATCY 5 cut(s) 10, 205, 807, 1106, 1307
BsuRI GGCC 3 cut(s) 48, 236, 1374
BtgI CCRYGG 1 cut(s) 32
BtgZI GCGATG 2 cut(s) 361, 495
BtsCI GGATG 3 cut(s) 129, 250, 1106
BtsI GCAGTG 1 cut(s) 439
BtsIMutI CAGTG 5 cut(s) 246, 439, 735, 795, 1172
Cac8I GCNNGC 2 cut(s) 430, 1275
CaiI CAGNNNCTG 1 cut(s) 1174
Cfr13I GGNCC 1 cut(s) 449
CsiI ACCWGGT 1 cut(s) 836
Csp6I GTAC 3 cut(s) 248, 1008, 1404
CviAII CATG 5 cut(s) 33, 101, 482, 1136, 1274
CviQI GTAC 3 cut(s) 248, 1008, 1404
DdeI CTNAG 6 cut(s) 14, 231, 759, 947, 1268, 1304
DpnI GATC 9 cut(s) 12, 166, 207, 288, 809, 1108, 1167, 1309, 1344
DpnII GATC 9 cut(s) 10, 164, 205, 286, 807, 1106, 1165, 1307, 1342
DraI TTTAAA 1 cut(s) 814
EaeI YGGCCR 2 cut(s) 46, 1372
Eam1104I CTCTTC 2 cut(s) 1128, 1281
EarI CTCTTC 2 cut(s) 1128, 1281
EciI GGCGGA 1 cut(s) 462
Eco130I CCWWGG 2 cut(s) 32, 81
Eco32I GATATC 1 cut(s) 1257
Eco47I GGWCC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 579
EcoRII CCWGG 1 cut(s) 836
EcoRV GATATC 1 cut(s) 1257
EcoT14I CCWWGG 2 cut(s) 32, 81
ErhI CCWWGG 2 cut(s) 32, 81
FaeI CATG 5 cut(s) 36, 104, 485, 1139, 1277
FaqI GGGAC 1 cut(s) 167
FatI CATG 5 cut(s) 32, 100, 481, 1135, 1273
FauNDI CATATG 1 cut(s) 283
FbaI TGATCA 2 cut(s) 1165, 1342
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 8 cut(s) 293, 326, 329, 357, 1225, 1326, 1329, 1352
FokI GGATG 3 cut(s) 116, 257, 1113
Fsp4HI GCNGC 8 cut(s) 293, 326, 329, 357, 1225, 1326, 1329, 1352
GluI GCNGC 8 cut(s) 293, 326, 329, 357, 1225, 1326, 1329, 1352
GsuI CTGGAG 1 cut(s) 935
HaeIII GGCC 3 cut(s) 48, 236, 1374
HapII CCGG 4 cut(s) 210, 497, 518, 645
Hin1II CATG 5 cut(s) 36, 104, 485, 1139, 1277
HincII GTYRAC 3 cut(s) 373, 1003, 1384
HindII GTYRAC 3 cut(s) 373, 1003, 1384
HindIII AAGCTT 1 cut(s) 502
HinfI GANTC 2 cut(s) 617, 1120
HpaII CCGG 4 cut(s) 210, 497, 518, 645
HphI GGTGA 1 cut(s) 1352
Hpy166II GTNNAC 5 cut(s) 373, 706, 738, 1003, 1384
Hpy188I TCNGA 4 cut(s) 349, 925, 950, 1015
Hpy188III TCNNGA 5 cut(s) 554, 645, 758, 1098, 1393
Hpy8I GTNNAC 5 cut(s) 373, 706, 738, 1003, 1384
Hpy99I CGWCG 1 cut(s) 680
HpyAV CCTTC 5 cut(s) 218, 448, 680, 768, 1286
HpyCH4III ACNGT 3 cut(s) 241, 544, 1007
HpyCH4IV ACGT 1 cut(s) 1415
HpyF10VI GCNNNNNNNGC 4 cut(s) 434, 629, 826, 1322
HpyF3I CTNAG 6 cut(s) 14, 231, 759, 947, 1268, 1304
HpySE526I ACGT 1 cut(s) 1415
Hsp92II CATG 5 cut(s) 36, 104, 485, 1139, 1277
Kpn2I TCCGGA 1 cut(s) 644
Ksp22I TGATCA 2 cut(s) 1165, 1342
Kzo9I GATC 9 cut(s) 10, 164, 205, 286, 807, 1106, 1165, 1307, 1342
LmnI GCTCC 5 cut(s) 144, 227, 322, 593, 916
Lsp1109I GCAGC 8 cut(s) 279, 315, 337, 368, 1236, 1312, 1338, 1340
LweI GCATC 2 cut(s) 15, 970
MabI ACCWGGT 1 cut(s) 836
MaeII ACGT 1 cut(s) 1415
MalI GATC 9 cut(s) 12, 166, 207, 288, 809, 1108, 1167, 1309, 1344
MboI GATC 9 cut(s) 10, 164, 205, 286, 807, 1106, 1165, 1307, 1342
MboII GAAGA 5 cut(s) 30, 286, 743, 1115, 1298
MfeI CAATTG 1 cut(s) 1074
MflI RGATCY 5 cut(s) 10, 205, 807, 1106, 1307
MhlI GDGCHC 2 cut(s) 946, 1047
MlsI TGGCCA 2 cut(s) 48, 1374
MluCI AATT 7 cut(s) 146, 789, 1074, 1113, 1127, 1376, 1399
MluNI TGGCCA 2 cut(s) 48, 1374
MlyI GAGTC 1 cut(s) 1114
MmeI TCCRAC 1 cut(s) 91
Mox20I TGGCCA 2 cut(s) 48, 1374
MroI TCCGGA 1 cut(s) 644
MscI TGGCCA 2 cut(s) 48, 1374
MseI TTAA 4 cut(s) 306, 506, 813, 1420
Msp20I TGGCCA 2 cut(s) 48, 1374
MspA1I CMGCKG 2 cut(s) 328, 1331
MspI CCGG 4 cut(s) 210, 497, 518, 645
MspR9I CCNGG 2 cut(s) 210, 838
MunI CAATTG 1 cut(s) 1074
Mva1269I GAATGC 1 cut(s) 1183
MvaI CCWGG 1 cut(s) 838
MwoI GCNNNNNNNGC 4 cut(s) 434, 629, 826, 1322
NciI CCSGG 1 cut(s) 210
NcoI CCATGG 1 cut(s) 32
NdeI CATATG 1 cut(s) 283
NdeII GATC 9 cut(s) 10, 164, 205, 286, 807, 1106, 1165, 1307, 1342
NlaIII CATG 5 cut(s) 36, 104, 485, 1139, 1277
NlaIV GGNNCC 3 cut(s) 207, 300, 1044
NmeAIII GCCGAG 1 cut(s) 1253
NspI RCATGY 2 cut(s) 1139, 1277
PaeI GCATGC 1 cut(s) 1277
PaeR7I CTCGAG 1 cut(s) 579
PctI GAATGC 1 cut(s) 1183
PfeI GAWTC 1 cut(s) 617
PflMI CCANNNNNTGG 1 cut(s) 1076
PkrI GCNGC 8 cut(s) 294, 327, 330, 358, 1226, 1327, 1330, 1353
PleI GAGTC 1 cut(s) 1114
PpsI GAGTC 1 cut(s) 1114
PshAI GACNNNNGTC 1 cut(s) 1200
Psp6I CCWGG 1 cut(s) 836
PspGI CCWGG 1 cut(s) 836
PspN4I GGNNCC 3 cut(s) 207, 300, 1044
PspPI GGNCC 1 cut(s) 449
PspXI VCTCGAGB 1 cut(s) 579
PstI CTGCAG 2 cut(s) 297, 1330
PstNI CAGNNNCTG 1 cut(s) 1174
PsuI RGATCY 5 cut(s) 10, 205, 807, 1106, 1307
PvuII CAGCTG 2 cut(s) 328, 1331
RsaI GTAC 3 cut(s) 249, 1009, 1405
RsaNI GTAC 3 cut(s) 248, 1008, 1404
SalI GTCGAC 1 cut(s) 371
SaqAI TTAA 4 cut(s) 306, 506, 813, 1420
SatI GCNGC 8 cut(s) 293, 326, 329, 357, 1225, 1326, 1329, 1352
Sau3AI GATC 9 cut(s) 10, 164, 205, 286, 807, 1106, 1165, 1307, 1342
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 1 cut(s) 1114
ScrFI CCNGG 2 cut(s) 210, 838
SduI GDGCHC 2 cut(s) 946, 1047
SexAI ACCWGGT 1 cut(s) 836
SfaNI GCATC 2 cut(s) 15, 970
SfcI CTRYAG 3 cut(s) 293, 990, 1326
Sfr274I CTCGAG 1 cut(s) 579
SinI GGWCC 1 cut(s) 449
SlaI CTCGAG 1 cut(s) 579
SmlI CTYRAG 2 cut(s) 579, 1391
SmoI CTYRAG 2 cut(s) 579, 1391
SphI GCATGC 1 cut(s) 1277
Sse9I AATT 7 cut(s) 146, 789, 1074, 1113, 1127, 1376, 1399
SsiI CCGC 1 cut(s) 447
StyD4I CCNGG 2 cut(s) 208, 836
StyI CCWWGG 2 cut(s) 32, 81
TaaI ACNGT 3 cut(s) 241, 544, 1007
TaiI ACGT 1 cut(s) 1418
TaqI TCGA 4 cut(s) 372, 553, 580, 1212
TasI AATT 7 cut(s) 146, 789, 1074, 1113, 1127, 1376, 1399
TatI WGTACW 1 cut(s) 1403
TfiI GAWTC 1 cut(s) 617
Tru1I TTAA 4 cut(s) 306, 506, 813, 1420
Tru9I TTAA 4 cut(s) 306, 506, 813, 1420
TscAI CASTG 5 cut(s) 246, 439, 735, 802, 1179
TseI GCWGC 8 cut(s) 292, 325, 328, 356, 1224, 1325, 1328, 1351
TspDTI ATGAA 2 cut(s) 89, 304
TspGWI ACGGA 2 cut(s) 64, 170
TspRI CASTG 5 cut(s) 246, 439, 735, 802, 1179
Van91I CCANNNNNTGG 1 cut(s) 1076
VpaK11BI GGWCC 1 cut(s) 449
XapI RAATTY 2 cut(s) 146, 789
XceI RCATGY 2 cut(s) 1139, 1277
XhoI CTCGAG 1 cut(s) 579
XmiI GTMKAC 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.