Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013980.1

Orthogroup ID

OG0000733

Physical Location & Seq

Genomic Coordinates Reverse (-)

98677 .. 99159

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013980.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgattccatggtctgcctttggccatatcatgcctttctttcaactctccctggccttagcaaaagccaaagttcacgtctccttcatatccaccacaaaaaacatccaaaggatcccaaaattctcaccttatttgcaatccttgatccactttgtggccatgccgtttccacctttggaacctgactccttgccacaaggagcagaagtcactatggacgtaccctttgaaaaaatcgacaactttcacattgcatatgatctcctacaacaacccattaagcagctcattgcagatcaaatgccggattggataatagcagatttttctgctcattgggtggttgagattgccaaagagtatggtgttcactcgcctacttctcagttttctctgcttctaccagtgttttctttggctcacctgacaatctcactggtgcaaacagaaactatgctctcccatcaccagaaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

160

Amino Acids

18.13

Weight (kDa)

6.09

Isoelectric Point (pI)

52.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05830 FvH4_7g15020 FvH4_7g15600 FvH4_7g15610 FvH4_7g15620 FvH4_7g15650
malus_domestica	MD00G1112100.v1.1 MD01G1068500.v1.1 MD01G1068700.v1.1 MD01G1068800.v1.1 MD03G1019100.v1.1
prunus_persica	Prupe.2G174700_v2.0.a1 Prupe.2G175000_v2.0.a1 Prupe.2G175000_v2.0.a1
pyrus_communis	pycom01g09780 pycom01g09790 pycom01g09820 pycom01g09840 pycom07g13020
rosa_chinensis	RchiOBHm_Chr1g0357061 RchiOBHm_Chr1g0357071 RchiOBHm_Chr1g0358281 RchiOBHm_Chr1g0358291 RchiOBHm_Chr1g0358321 RchiOBHm_Chr1g0358331
rosa_laevigata	RLG00000027973 RLG00000027974 RLG00000027975 RLG00000027976 RLG00000028053 RLG00000028054 RLG00000028055 RLG00000028057 RLG00000028153
rosa_multiflora	Rmu_sc0000166.1_g000044 Rmu_sc0000166.1_g000047 Rmu_sc0002071.1_g000024 Rmu_sc0002071.1_g000025 Rmu_sc0002144.1_g000001 Rmu_sc0013980.1_g000005 Rmu_sc0013980.1_g000013 Rmu_sc0013980.1_g000020 Rmu_sc0013980.1_g000023 Rmu_sc0016079.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298220 Rroxscaffold_4G00298250 Rroxscaffold_4G00299080
rosa_rugosa	Rorug01G0246700 Rorug01G0254000 Rorug01G0254100 Rorug01G0260600 Rorug01G0261000
rosa_samantha	Rh1AG267700 Rh1AG267800 Rh1AG268200 Rh1AG274700 Rh1BG235600 Rh1BG235700 Rh1BG235900 Rh1BG241500 Rh1CG243100 Rh1CG251700 Rh1CG251900 Rh1CG257800 Rh1DG263000 Rh1DG263100 Rh1DG263200 Rh1DG270300
rosa_wichuraiana	Rw1G023630 Rw1G023640 Rw1G023670 Rw1G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	157
AclWI	GGATC	3 cut(s)	109, 122, 142
AcoI	YGGCCR	2 cut(s)	22, 159
AcsI	RAATTY	1 cut(s)	122
AdeI	CACNNNGTG	1 cut(s)	157
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	44, 233
AjiI	CACGTC	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	2 cut(s)	289, 479
AluI	AGCT	2 cut(s)	289, 479
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	3 cut(s)	109, 122, 142
AoxI	GGCC	3 cut(s)	22, 54, 159
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	122
ArsI	GACNNNNNNTTYG	4 cut(s)	63, 95, 212, 244
AsuHPI	GGTGA	3 cut(s)	120, 416, 461
BalI	TGGCCA	2 cut(s)	24, 161
BamHI	GGATCC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	1 cut(s)	474
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	85
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	53
BmgBI	CACGTC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	116, 183
BmrFI	CCNGG	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	8, 51
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	407, 444
Bse3DI	GCAATG	2 cut(s)	252, 291
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	8, 51
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMI	GCAATG	2 cut(s)	252, 291
BseMII	CTCAG	1 cut(s)	401
BseNI	ACTGG	2 cut(s)	407, 444
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	3 cut(s)	24, 56, 161
BsiSI	CCGG	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	85
BsmBI	CGTCTC	1 cut(s)	85
BsnI	GGCC	3 cut(s)	24, 56, 161
Bsp143I	GATC	4 cut(s)	114, 147, 262, 298
Bsp19I	CCATGG	1 cut(s)	8
BspANI	GGCC	3 cut(s)	24, 56, 161
BspCNI	CTCAG	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	116, 183
BspPI	GGATC	3 cut(s)	109, 122, 142
BsrDI	GCAATG	2 cut(s)	252, 291
BsrI	ACTGG	2 cut(s)	407, 444
BssECI	CCNNGG	2 cut(s)	8, 51
BssMI	GATC	4 cut(s)	114, 147, 262, 298
BssT1I	CCWWGG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	53
BstDEI	CTNAG	2 cut(s)	58, 387
BstDSI	CCRYGG	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	4 cut(s)	117, 150, 265, 301
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	4 cut(s)	114, 147, 262, 298
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	3 cut(s)	24, 56, 161
BtgI	CCRYGG	1 cut(s)	8
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	414, 437
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	3 cut(s)	9, 31, 163
CviJI	RGCY	7 cut(s)	24, 56, 68, 161, 289, 422, 479
CviKI_1	RGCY	7 cut(s)	24, 56, 68, 161, 289, 422, 479
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	2 cut(s)	58, 387
DpnI	GATC	4 cut(s)	116, 149, 264, 300
DpnII	GATC	4 cut(s)	114, 147, 262, 298
DraIII	CACNNNGTG	1 cut(s)	157
EaeI	YGGCCR	2 cut(s)	22, 159
Eco130I	CCWWGG	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	3 cut(s)	12, 34, 166
FatI	CATG	3 cut(s)	8, 30, 162
FauNDI	CATATG	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	287
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	287
GluI	GCNGC	1 cut(s)	287
HaeIII	GGCC	3 cut(s)	24, 56, 161
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	3 cut(s)	12, 34, 166
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	2 cut(s)	4, 188
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	3 cut(s)	120, 416, 461
Hpy166II	GTNNAC	2 cut(s)	76, 373
Hpy8I	GTNNAC	2 cut(s)	76, 373
HpyAV	CCTTC	1 cut(s)	94
HpyCH4IV	ACGT	2 cut(s)	78, 222
HpyCH4V	TGCA	4 cut(s)	139, 257, 296, 445
HpyF3I	CTNAG	2 cut(s)	58, 387
HpySE526I	ACGT	2 cut(s)	78, 222
Hsp92II	CATG	3 cut(s)	12, 34, 166
Kzo9I	GATC	4 cut(s)	114, 147, 262, 298
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	7 cut(s)	38, 65, 198, 321, 420, 425, 440
Lsp1109I	GCAGC	1 cut(s)	298
MaeII	ACGT	2 cut(s)	78, 222
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	4 cut(s)	116, 149, 264, 300
MboI	GATC	4 cut(s)	114, 147, 262, 298
MflI	RGATCY	1 cut(s)	114
MlsI	TGGCCA	2 cut(s)	24, 161
MluCI	AATT	1 cut(s)	122
MluNI	TGGCCA	2 cut(s)	24, 161
MlyI	GAGTC	1 cut(s)	182
Mox20I	TGGCCA	2 cut(s)	24, 161
MscI	TGGCCA	2 cut(s)	24, 161
MseI	TTAA	1 cut(s)	282
Msp20I	TGGCCA	2 cut(s)	24, 161
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	8
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	4 cut(s)	114, 147, 262, 298
NlaIII	CATG	3 cut(s)	12, 34, 166
NlaIV	GGNNCC	2 cut(s)	116, 183
NmuCI	GTSAC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	288
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	116, 183
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	4 cut(s)	114, 147, 262, 298
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	53
SetI	ASST	8 cut(s)	81, 133, 178, 187, 225, 291, 429, 481
Sse9I	AATT	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	8
TaiI	ACGT	2 cut(s)	81, 225
TaqI	TCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	2 cut(s)	414, 444
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	76
TspRI	CASTG	2 cut(s)	414, 444
Van91I	CCANNNNNTGG	1 cut(s)	157
XapI	RAATTY	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.